Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 0.0e+00 1194.9 619 100.0
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 0.0e+00 1081.6 614 88.4
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 0.0e+00 1078.2 615 89.1
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 8.5e-312 1072.8 615 88.6
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 1.7e-311 1072.0 615 88.6
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 1.1e-310 1069.3 615 88.3
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 1.9e-310 1068.5 615 88.8
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 2.5e-310 1068.1 615 88.1
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 9.3e-310 1066.2 616 87.7
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 9.3e-310 1066.2 614 87.5
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 1.6e-309 1065.4 615 88.0
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 6.0e-309 1063.5 615 87.6
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 3.0e-308 1061.2 615 87.8
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 1.9e-307 1058.5 615 87.6
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 3.3e-307 1057.7 615 87.6
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 8.2e-306 1053.1 615 86.3
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 4.1e-305 1050.8 616 86.7
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 6.9e-305 1050.0 615 86.7
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 9.0e-305 1049.7 615 86.2
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 1.5e-304 1048.9 615 85.9
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 1.5e-304 1048.9 614 85.7
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 2.0e-304 1048.5 624 84.8
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 1.0e-303 1046.2 615 85.2
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 2.9e-303 1044.6 640 83.4
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 1.2e-301 1039.3 614 85.8
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 2.7e-301 1038.1 615 86.3
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 4.6e-301 1037.3 625 84.0
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 3.0e-300 1034.6 616 85.1
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 1.1e-299 1032.7 614 84.2
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 7.4e-299 1030.0 615 85.0
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 8.2e-298 1026.5 654 81.2
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 9.0e-297 1023.1 615 84.7
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 1.2e-296 1022.7 616 84.1
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 3.4e-296 1021.1 614 83.6
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 2.2e-295 1018.5 617 85.1
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 4.6e-293 1010.7 681 78.3
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 7.9e-293 1010.0 619 83.2
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 4.3e-291 1004.2 615 81.8
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 7.4e-291 1003.4 614 82.7
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 2.0e-288 995.3 609 81.9
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 1.3e-287 992.6 615 81.3
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 1.7e-287 992.3 615 81.6
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 3.8e-287 991.1 619 81.1
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 3.8e-287 991.1 615 81.3
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 3.8e-287 991.1 750 71.1
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 5.0e-287 990.7 642 78.8
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 5.0e-287 990.7 615 81.3
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 3.2e-286 988.0 615 81.6
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 3.2e-286 988.0 615 81.6
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 3.2e-286 988.0 618 81.9
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 9.4e-286 986.5 612 81.4
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 9.4e-286 986.5 615 81.6
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 2.1e-285 985.3 615 81.0
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 2.1e-285 985.3 615 81.5
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 4.7e-285 984.2 612 81.0
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 1.4e-284 982.6 614 81.1
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 1.8e-284 982.2 616 81.0
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 2.3e-284 981.9 615 80.8
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 2.3e-284 981.9 610 82.0
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 1.1e-283 979.5 615 80.5
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 1.1e-283 979.5 614 80.1
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 9.7e-283 976.5 620 80.2
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 2.0e-280 968.8 648 77.0
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 7.7e-280 966.8 615 78.5
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 3.8e-279 964.5 620 79.2
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 2.7e-277 958.4 541 89.3
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 4.7e-277 957.6 615 79.2
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 8.0e-277 956.8 615 78.0
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 3.0e-276 954.9 615 77.7
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 1.4e-273 946.0 628 77.1
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 5.3e-273 944.1 613 78.6
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 9.1e-273 943.3 615 77.2
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 1.7e-271 939.1 615 78.0
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 2.5e-270 935.3 615 77.4
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 1.4e-268 929.5 614 76.9
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 3.4e-267 924.9 574 81.2
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 7.5e-267 923.7 615 76.4
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 7.5e-267 923.7 615 76.3
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 8.3e-266 920.2 615 75.6
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 2.4e-265 918.7 631 75.8
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 7.7e-264 913.7 615 76.7
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 6.5e-263 910.6 582 79.7
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 1.5e-262 909.4 599 76.1
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 3.0e-260 901.7 601 75.5
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 4.0e-260 901.4 516 87.8
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 3.7e-258 894.8 639 73.2
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 4.9e-258 894.4 516 86.0
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 7.7e-256 887.1 615 74.0
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 2.7e-248 862.1 575 77.2
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 6.6e-247 857.4 620 72.4
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 4.3e-246 854.7 511 85.5
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 6.8e-244 847.4 615 72.0
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 1.4e-241 839.7 616 68.8
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 1.3e-226 790.0 468 84.2
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 7.8e-224 780.8 566 73.0
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 3.3e-222 775.4 615 62.3
Atru.chr12.963 Acer truncatum HOM05D004954 ORTHO05D006267 9.6e-222 773.9 443 88.0
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 7.6e-219 764.2 557 72.5
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 3.5e-208 728.8 620 59.5
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 2.4e-201 706.1 615 58.5
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 5.0e-186 655.2 646 52.5
Cpa.g.sc8.76 Carica papaya HOM05D004954 ORTHO05D006267 4.4e-174 615.5 358 86.6
CARHR183510 Cardamine hirsuta HOM05D004954 ORTHO05D006267 4.1e-164 582.4 359 82.2
COL.COLO4_03294 Corchorus olitorius HOM05D004954 ORTHO05D006267 1.0e-162 577.8 339 87.0
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 2.9e-162 576.2 616 50.2
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 8.5e-162 574.7 491 66.4
Zm00001eb301770 Zea mays HOM05D004954 ORTHO05D006267 1.0e-154 551.2 616 47.4
arahy.Tifrunner.gnm1.ann1.R4R8P3 Arachis hypogaea HOM05D004954 ORTHO05D006267 1.7e-149 533.9 388 72.4
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 5.4e-140 502.3 364 69.5
CBR_g32699 Chara braunii HOM05D004954 ORTHO05D006267 8.3e-125 451.8 510 45.9
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 2.4e-124 450.3 597 46.2
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 2.7e-115 420.2 374 63.9
vmacro21300 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 1.0e-114 418.3 280 79.3
MD05G1161600 Malus domestica HOM05D004954 ORTHO05D006267 4.9e-101 372.9 454 51.1
GSVIVG01002254001 Vitis vinifera HOM05D004954 ORTHO05D006267 3.9e-82 310.1 175 90.3
COL.COLO4_03295 Corchorus olitorius HOM05D004954 ORTHO05D006267 6.2e-80 302.8 171 90.6
SEGI_36119 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 7.6e-70 269.2 186 69.4
FAN15G2003 Fragaria x ananassa HOM05D004954 ORTHO05D006267 5.0e-61 240.0 146 83.6
Sc17g0001690 Simmondsia chinensis HOM05D004954 ORTHO05D006267 5.1e-58 229.9 141 84.4
FAN15G2507 Fragaria x ananassa HOM05D004954 ORTHO05D006267 8.8e-58 229.2 134 82.1
Cpa.g.sc8.77 Carica papaya HOM05D004954 ORTHO05D006267 1.8e-55 221.5 117 91.5
MD05G1161700 Malus domestica HOM05D004954 ORTHO05D006267 5.0e-53 213.4 122 89.3
Atru.chr12.964 Acer truncatum HOM05D004954 ORTHO05D006267 1.6e-51 208.4 151 71.5
Sabra14G0144300 Salix brachista HOM05D004954 ORTHO05D006267 9.1e-47 192.6 106 87.7
MBI18_g37244_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 2.9e-45 187.6 105 83.8
SEGI_30399 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.9e-44 184.9 135 68.9
Ca_12408_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 3.1e-39 167.5 178 53.9
VMungo0647G2582 Vigna mungo HOM05D004954 ORTHO05D006267 3.1e-39 167.5 102 83.3
MD05G1160200 Malus domestica HOM05D004954 ORTHO05D006267 1.1e-31 142.5 86 81.4
VMungo0647G1109 Vigna mungo HOM05D004954 ORTHO05D006267 2.9e-29 134.4 100 72.0
CBR_g49514 Chara braunii HOM05D000019 ORTHO05D001702 2.0e-25 121.7 106 53.8
Ca_12409_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 4.4e-25 120.6 71 83.1
MD05G1162200 Malus domestica HOM05D004954 ORTHO05D006267 1.1e-23 115.9 58 91.4
SEGI_32998 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 7.0e-23 113.2 84 70.2
QL09p053445 Quercus lobata HOM05D004954 ORTHO05D030058 2.0e-22 111.7 117 63.2
PGSC0003DMG400008807 Solanum tuberosum HOM05D004954 ORTHO05D006267 1.0e-21 109.4 59 81.4
PGSC0003DMG400020114 Solanum tuberosum HOM05D004954 ORTHO05D006267 1.0e-21 109.4 59 81.4
VMungo0464G0043 Vigna mungo HOM05D004954 ORTHO05D006267 1.1e-20 105.9 59 81.4
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 1.1e-20 105.9 59 81.4
Ciclev10018232m.g Citrus clementina HOM05D004954 ORTHO05D006267 1.5e-20 105.5 76 72.4
Cfa002883 Carpinus fangiana HOM05D020463 ORTHO05D022255 1.7e-16 92.0 54 79.6
Hma1.2p1_0066F.1_g035760 Hydrangea macrophylla HOM05D004954 ORTHO05D006267 2.4e-15 88.2 56 71.4
Glyma.09G284100 Glycine max HOM05D004954 ORTHO05D006267 4.6e-14 84.0 50 76.0
Medtr3g114845 Medicago truncatula HOM05D004954 ORTHO05D006267 1.1e-10 72.8 44 63.6
CSS0000571 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D014145 1.4e-10 72.4 48 81.2
TAR375G0464 Trochodendron aralioides HOM05D004954 ORTHO05D006267 2.3e-10 71.6 43 74.4
MD05G1162500 Malus domestica HOM05D004954 ORTHO05D006267 5.2e-10 70.5 80 46.2
SEGI_31941 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.7e-08 65.5 38 73.7
QL09p053081 Quercus lobata HOM05D002786 ORTHO05D030058 7.0e-07 60.1 43 76.7
Hma1.2p1_0484F.1_g162800 Hydrangea macrophylla HOM05D004954 ORTHO05D008776 6.0e-06 57.0 33 81.8
Hma1.2p1_0717F.1_g208260 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 6.0e-06 57.0 34 79.4


User provided reference genes

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