Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2612 Punica granatum HOM05D003583 ORTHO05D004169 3.3e-145 518.5 279 100.0
Potri.002G245900 Populus trichocarpa HOM05D003583 ORTHO05D004169 1.7e-72 276.9 225 70.7
Sabra02G0187200 Salix brachista HOM05D003583 ORTHO05D004169 8.2e-72 274.6 216 74.1
VMungo1383G2149 Vigna mungo HOM05D003583 ORTHO05D004169 8.2e-72 274.6 208 70.2
Manes.12G047400 Manihot esculenta HOM05D003583 ORTHO05D004169 3.1e-71 272.7 218 72.0
Cfa004159 Carpinus fangiana HOM05D003583 ORTHO05D004169 6.9e-71 271.6 216 72.7
Psat3g148960 Pisum sativum HOM05D003583 ORTHO05D004169 2.0e-70 270.0 230 75.2
Ciclev10021065m.g Citrus clementina HOM05D003583 ORTHO05D004169 2.6e-70 269.6 222 69.8
Phvul.008G131301 Phaseolus vulgaris HOM05D003583 ORTHO05D004169 1.7e-69 266.9 211 68.7
Haze_15252 Corylus avellana HOM05D003583 ORTHO05D004169 5.0e-69 265.4 197 73.6
MD05G1171600 Malus domestica HOM05D003583 ORTHO05D004169 5.0e-69 265.4 161 83.9
Eucgr.K02138 Eucalyptus grandis HOM05D003583 ORTHO05D004169 1.1e-68 264.2 196 79.1
Manes.13G049400 Manihot esculenta HOM05D003583 ORTHO05D004169 1.4e-68 263.8 215 74.0
Solyc09g059500.3 Solanum lycopersicum HOM05D003583 ORTHO05D004169 1.4e-68 263.8 222 66.7
Sopen09g022660 Solanum pennellii HOM05D003583 ORTHO05D004169 1.4e-68 263.8 222 64.9
TWI36G1542 Tripterygium wilfordii HOM05D003583 ORTHO05D004169 1.4e-68 263.8 221 66.5
THA.LOC104822491 Tarenaya hassleriana HOM05D003583 ORTHO05D004169 2.5e-68 263.1 199 73.9
TWI75G1818 Tripterygium wilfordii HOM05D003583 ORTHO05D004169 2.5e-68 263.1 221 66.1
FvH4_2g18540 Fragaria vesca HOM05D003583 ORTHO05D004169 5.5e-68 261.9 159 82.4
FAN15G2515 Fragaria x ananassa HOM05D003583 ORTHO05D004169 5.5e-68 261.9 159 82.4
FAN24G2032 Fragaria x ananassa HOM05D003583 ORTHO05D004169 5.5e-68 261.9 159 82.4
Prupe.8G198900 Prunus persica HOM05D003583 ORTHO05D004169 9.4e-68 261.2 222 73.0
arahy.Tifrunner.gnm1.ann1.6L1LF5 Arachis hypogaea HOM05D003583 ORTHO05D004169 1.6e-67 260.4 222 67.1
arahy.Tifrunner.gnm1.ann1.SP3ESK Arachis hypogaea HOM05D003583 ORTHO05D004169 1.6e-67 260.4 222 67.1
MD10G1159800 Malus domestica HOM05D003583 ORTHO05D004169 1.6e-67 260.4 164 81.1
Rhsim13G0047800 Rhododendron simsii HOM05D003583 ORTHO05D004169 1.6e-67 260.4 209 74.6
CiPaw.02G023700 Carya illinoinensis HOM05D003583 ORTHO05D004169 2.1e-67 260.0 214 64.5
Nitab4.5_0000045g0500 Nicotiana tabacum HOM05D003583 ORTHO05D004169 2.1e-67 260.0 224 69.6
ClCG07G002090 Citrullus lanatus HOM05D003583 ORTHO05D004169 2.7e-67 259.6 230 64.3
Ca_03475_v3 Cicer arietinum L. HOM05D003583 ORTHO05D004169 3.6e-67 259.2 225 65.3
FAN27G2245 Fragaria x ananassa HOM05D003583 ORTHO05D004169 4.7e-67 258.8 159 81.8
Nitab4.5_0001161g0140 Nicotiana tabacum HOM05D003583 ORTHO05D004169 6.1e-67 258.5 220 70.5
QL09p051234 Quercus lobata HOM05D003583 ORTHO05D004169 7.9e-67 258.1 207 74.4
Lsat_1_v5_gn_5_180820 Lactuca sativa HOM05D003583 ORTHO05D004169 1.4e-66 257.3 217 65.9
Lj1g0010920 Lotus japonicus HOM05D003583 ORTHO05D004169 1.4e-66 257.3 222 65.8
CAN.G1418.4 Capsicum annuum HOM05D003583 ORTHO05D004169 2.3e-66 256.5 225 65.8
Cc01_g16710 Coffea canephora HOM05D003583 ORTHO05D004169 3.0e-66 256.1 228 69.7
CsaV3_3G030030 Cucumis sativus L. HOM05D003583 ORTHO05D004169 3.0e-66 256.1 231 64.1
RcHm_v2.0_Chr6g0284101 Rosa chinensis HOM05D003583 ORTHO05D004169 3.9e-66 255.8 159 80.5
Sed0008761 Sechium edule HOM05D003583 ORTHO05D004169 3.9e-66 255.8 216 66.2
MELO3C022717.2 Cucumis melo HOM05D003583 ORTHO05D004169 5.2e-66 255.4 231 63.6
Cpa.g.sc34.102 Carica papaya HOM05D003583 ORTHO05D004169 6.7e-66 255.0 203 68.5
Dinv19172 Davidia involucrata HOM05D003583 ORTHO05D004169 6.7e-66 255.0 229 62.9
Hma1.2p1_0226F.1_g095390 Hydrangea macrophylla HOM05D003583 ORTHO05D004169 1.5e-65 253.8 127 96.1
SalBow3G2553 Salvia bowleyana HOM05D003583 ORTHO05D004169 1.5e-65 253.8 219 71.7
Glyma.18G160200 Glycine max HOM05D003583 ORTHO05D004169 3.3e-65 252.7 208 64.9
COL.COLO4_15618 Corchorus olitorius HOM05D003583 ORTHO05D004169 4.4e-65 252.3 231 63.6
GSVIVG01003252001 Vitis vinifera HOM05D003583 ORTHO05D004169 4.4e-65 252.3 219 64.8
CANSAT01G0519 Cannabis sativa HOM05D003583 ORTHO05D004169 7.4e-65 251.5 207 74.4
Migut.N00631 Erythranthe guttata HOM05D003583 ORTHO05D004169 7.4e-65 251.5 235 65.5
Hund05577 Selenicereus undatus HOM05D003583 ORTHO05D004169 7.4e-65 251.5 213 72.8
CSS0028584 Camellia sinensis var. sinensis HOM05D003583 ORTHO05D004169 1.7e-64 250.4 212 67.0
CARHR081870 Cardamine hirsuta HOM05D003583 ORTHO05D004169 1.7e-64 250.4 204 71.1
Lalb_Chr19g0125831 Lupinus albus HOM05D003583 ORTHO05D004169 1.7e-64 250.4 211 73.5
Glyma.08G348400 Glycine max HOM05D003583 ORTHO05D004169 2.2e-64 250.0 210 65.2
Dinv12649 Davidia involucrata HOM05D003583 ORTHO05D004169 2.8e-64 249.6 233 69.1
Gohir.A07G199000 Gossypium hirsutum HOM05D003583 ORTHO05D004169 2.8e-64 249.6 229 63.3
Gohir.D07G205500 Gossypium hirsutum HOM05D003583 ORTHO05D004169 2.8e-64 249.6 229 63.3
Gorai.001G231500 Gossypium raimondii HOM05D003583 ORTHO05D004169 2.8e-64 249.6 229 63.3
AUR62001132 Chenopodium quinoa HOM05D003583 ORTHO05D004169 3.7e-64 249.2 135 88.9
Medtr7g055873 Medicago truncatula HOM05D003583 ORTHO05D004169 4.8e-64 248.8 218 65.1
Actinidia39429 Actinidia chinensis HOM05D003583 ORTHO05D004169 1.1e-63 247.7 227 62.1
MSTRG.17995 Avicennia marina HOM05D003583 ORTHO05D004169 1.1e-63 247.7 230 70.0
SGA_v2.0_scaffold6G03502 Striga asiatica HOM05D003583 ORTHO05D004169 1.1e-63 247.7 123 95.1
Aa31LG5G17810 Aethionema arabicum HOM05D003583 ORTHO05D004169 1.4e-63 247.3 205 74.6
Duzib211G0612 Durio zibethinus HOM05D003583 ORTHO05D004169 1.4e-63 247.3 155 78.7
Thhalv10004601m.g Eutrema salsugineum HOM05D003583 ORTHO05D004169 1.8e-63 246.9 160 80.0
AL3G18500 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 3.1e-63 246.1 158 79.1
AT3G07220 Arabidopsis thaliana HOM05D003583 ORTHO05D004169 3.1e-63 246.1 158 79.1
CAN.G874.6 Capsicum annuum HOM05D003583 ORTHO05D004169 3.1e-63 246.1 126 93.7
Duzib138G0093 Durio zibethinus HOM05D003583 ORTHO05D004169 3.1e-63 246.1 179 73.2
Gohir.D08G212800 Gossypium hirsutum HOM05D003583 ORTHO05D004169 3.1e-63 246.1 174 74.1
Peaxi162Scf00068g02311 Petunia axillaris HOM05D003583 ORTHO05D004169 4.1e-63 245.7 235 62.6
Sopen06g034720 Solanum pennellii HOM05D003583 ORTHO05D004169 1.6e-62 243.8 224 66.5
Atru.chr6.1424 Acer truncatum HOM05D003583 ORTHO05D004169 2.0e-62 243.4 212 67.5
Oeu030584.1 Olea europaea HOM05D003583 ORTHO05D004169 2.6e-62 243.0 161 78.3
SalBow6G4396 Salvia bowleyana HOM05D003583 ORTHO05D004169 2.6e-62 243.0 166 74.7
SalBow6G5082 Salvia bowleyana HOM05D003583 ORTHO05D004169 2.6e-62 243.0 166 74.7
HanXRQChr01g0015291 Helianthus annuus HOM05D003583 ORTHO05D004169 3.5e-62 242.7 212 65.1
Nitab4.5_0003020g0040 Nicotiana tabacum HOM05D003583 ORTHO05D004169 3.5e-62 242.7 131 89.3
AL3G18560 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 4.5e-62 242.3 136 86.0
PGSC0003DMG400020100 Solanum tuberosum HOM05D003583 ORTHO05D004169 4.5e-62 242.3 231 67.1
Lj1A89T66 Lonicera japonica HOM05D003583 ORTHO05D004169 5.9e-62 241.9 124 93.5
Solyc06g083350.3 Solanum lycopersicum HOM05D003583 ORTHO05D004169 5.9e-62 241.9 231 66.2
BcaC05g29851 Brassica carinata HOM05D003583 ORTHO05D004169 1.0e-61 241.1 129 89.1
C05p60140 Brassica napus HOM05D003583 ORTHO05D004169 1.0e-61 241.1 129 89.1
BolC5t34665H Brassica oleracea HOM05D003583 ORTHO05D004169 1.0e-61 241.1 129 89.1
Thecc.01G220200 Theobroma cacao HOM05D003583 ORTHO05D004169 1.0e-61 241.1 232 61.6
AT3G07260 Arabidopsis thaliana HOM05D003583 ORTHO05D004169 2.2e-61 240.0 158 77.2
A05p40990 Brassica napus HOM05D003583 ORTHO05D004169 2.2e-61 240.0 129 88.4
BraA05t22826Z Brassica rapa HOM05D003583 ORTHO05D004169 2.2e-61 240.0 129 88.4
Lalb_Chr03g0041471 Lupinus albus HOM05D003583 ORTHO05D004169 2.2e-61 240.0 215 62.3
Thhalv10021140m.g Eutrema salsugineum HOM05D003583 ORTHO05D004169 2.9e-61 239.6 204 74.5
SHI46266 Sapria himalayana HOM05D003583 ORTHO05D004169 3.8e-61 239.2 228 60.5
SHI46763 Sapria himalayana HOM05D003583 ORTHO05D004169 3.8e-61 239.2 228 60.5
Carub.0003s0675 Capsella rubella HOM05D003583 ORTHO05D004169 5.0e-61 238.8 136 85.3
Sp3g06180 Schrenkiella parvula HOM05D003583 ORTHO05D004169 5.0e-61 238.8 139 84.9
AL4G16370 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 6.5e-61 238.4 161 75.8
Nitab4.5_0013864g0010 Nicotiana tabacum HOM05D003583 ORTHO05D004169 6.5e-61 238.4 130 88.5
DCAR_018637 Daucus carota HOM05D003583 ORTHO05D004169 1.5e-60 237.3 166 74.7
Carub.0003s0679 Capsella rubella HOM05D003583 ORTHO05D004169 1.9e-60 236.9 136 84.6
HanXRQChr04g0108021 Helianthus annuus HOM05D003583 ORTHO05D004169 1.9e-60 236.9 160 78.8
TPR.G6446 Trifolium pratense HOM05D003583 ORTHO05D004169 2.5e-60 236.5 140 85.0
BraA09t36092Z Brassica rapa HOM05D003583 ORTHO05D004169 9.4e-60 234.6 164 78.0
BcaC05g29745 Brassica carinata HOM05D003583 ORTHO05D004169 1.2e-59 234.2 123 91.1
BcaC04g23769 Brassica carinata HOM05D003583 ORTHO05D004169 1.6e-59 233.8 164 78.0
C09p04880 Brassica napus HOM05D003583 ORTHO05D004169 1.6e-59 233.8 164 78.0
BolC9t53416H Brassica oleracea HOM05D003583 ORTHO05D004169 1.6e-59 233.8 164 78.0
Sc05g0001940 Simmondsia chinensis HOM05D003583 ORTHO05D004169 1.6e-59 233.8 125 91.2
BcaB04g19581 Brassica carinata HOM05D003583 ORTHO05D004169 3.6e-59 232.6 163 76.1
ECA236G5107 Erigeron canadensis HOM05D003583 ORTHO05D004169 4.7e-59 232.3 160 76.2
MBI11_g07419_MAGBIO Magnolia biondii HOM05D003583 ORTHO05D004169 6.1e-59 231.9 129 88.4
A09p04570 Brassica napus HOM05D003583 ORTHO05D004169 3.0e-58 229.6 164 76.8
PSO017G0014 Papaver somniferum HOM05D003583 ORTHO05D004169 3.0e-58 229.6 217 65.4
Sed0011833 Sechium edule HOM05D003583 ORTHO05D004169 3.0e-58 229.6 220 61.4
EL10Ac7g17902 Beta vulgaris HOM05D003583 ORTHO05D004169 4.0e-58 229.2 123 90.2
PSO063G4910 Papaver somniferum HOM05D003583 ORTHO05D004169 5.2e-58 228.8 217 68.7
SGA_v2.0_scaffold3G01637 Striga asiatica HOM05D003583 ORTHO05D004169 5.2e-58 228.8 130 87.7
Zm00001eb036350 Zea mays HOM05D003583 ORTHO05D004169 5.2e-58 228.8 148 77.7
Aqoxy5G00027 Aquilegia oxysepala HOM05D003583 ORTHO05D004169 2.0e-57 226.9 122 89.3
TAR362G1106 Trochodendron aralioides HOM05D003583 ORTHO05D004169 2.0e-57 226.9 209 66.5
AUR62016547 Chenopodium quinoa HOM05D003583 ORTHO05D004169 2.6e-57 226.5 126 88.1
TAR633G0566 Trochodendron aralioides HOM05D003583 ORTHO05D004169 2.6e-57 226.5 227 63.0
Os08g0528900 Oryza sativa ssp. japonica HOM05D003583 ORTHO05D004169 3.3e-57 226.1 144 79.9
Rhsim01G0252900 Rhododendron simsii HOM05D003583 ORTHO05D004169 9.7e-57 224.6 129 86.8
vmacro14733 Vaccinium macrocarpon HOM05D003583 ORTHO05D004169 1.3e-56 224.2 128 86.7
HPP92_008214 Vanilla planifolia HOM05D003583 ORTHO05D004169 9.1e-55 218.0 129 79.8
ATR0561G144 Amborella trichopoda HOM05D003583 ORTHO05D004169 7.7e-54 214.9 162 72.8
unitig_749.g13590 Utricularia gibba HOM05D003583 ORTHO05D004169 7.7e-54 214.9 123 83.7
Oeu057861.1 Olea europaea HOM05D003583 ORTHO05D004169 2.5e-52 209.9 144 77.8
SEGI_31201 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 4.2e-52 209.1 126 80.2
Mapoly0037s0072 Marchantia polymorpha HOM05D003583 ORTHO05D004169 2.3e-50 203.4 115 80.9
Pp3c23_3920 Physcomitrium patens HOM05D003583 ORTHO05D004169 3.7e-48 196.1 129 73.6
Pp3c20_16530 Physcomitrium patens HOM05D003583 ORTHO05D004169 4.8e-48 195.7 112 83.0
Pp3c24_8070 Physcomitrium patens HOM05D003583 ORTHO05D004169 4.8e-48 195.7 111 82.9
Lalb_Chr03g0041461 Lupinus albus HOM05D003583 ORTHO05D004169 6.3e-48 195.3 123 74.8
Pp3c23_9360 Physcomitrium patens HOM05D003583 ORTHO05D004169 6.3e-48 195.3 128 75.0
SMO115G0166 Selaginella moellendorffii HOM05D003583 ORTHO05D004169 1.8e-47 193.7 111 82.0
SMO166G0009 Selaginella moellendorffii HOM05D003583 ORTHO05D004169 9.1e-47 191.4 137 70.1
SEGI_22924 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 3.5e-46 189.5 130 73.1
Gorai.004G226900 Gossypium raimondii HOM05D003583 ORTHO05D004169 4.5e-46 189.1 171 64.9
Gohir.A08G195500 Gossypium hirsutum HOM05D003583 ORTHO05D004169 8.6e-45 184.9 171 60.8
HPP92_003545 Vanilla planifolia HOM05D003583 ORTHO05D004169 1.9e-44 183.7 107 82.2
Lalb_Chr07g0194191 Lupinus albus HOM05D003583 ORTHO05D004169 7.2e-44 181.8 120 74.2
Zm00001eb169940 Zea mays HOM05D003583 ORTHO05D004169 8.0e-43 178.3 129 68.2
PGR044G2014 Punica granatum HOM05D003583 ORTHO05D004169 1.4e-42 177.6 137 87.6
Oeu009710.1 Olea europaea HOM05D003583 ORTHO05D004169 1.8e-42 177.2 150 63.3
Os09g0505200 Oryza sativa ssp. japonica HOM05D003583 ORTHO05D004169 2.6e-41 173.3 135 65.9
AagrBONN_evm.TU.Sc2ySwM_362.2525 Anthoceros agrestis HOM05D003583 ORTHO05D004169 3.4e-41 172.9 108 77.8
Lalb_Chr19g0125841 Lupinus albus HOM05D003583 ORTHO05D004169 4.4e-41 172.6 125 63.2
CBR_g31665 Chara braunii HOM05D003583 ORTHO05D004169 1.3e-40 171.0 114 71.1
CANSAT01G1829 Cannabis sativa HOM05D003583 ORTHO05D004169 6.3e-40 168.7 138 64.5
vmacro02783 Vaccinium macrocarpon HOM05D003583 ORTHO05D004169 3.1e-39 166.4 165 60.0
unitig_0.g373 Utricularia gibba HOM05D003583 ORTHO05D004169 1.7e-37 160.6 178 56.2
unitig_60.g25602 Utricularia gibba HOM05D003583 ORTHO05D004169 3.3e-36 156.4 184 54.3
SEGI_31438 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 9.2e-31 138.3 84 76.2
Nn5g31016 Nelumbo nucifera HOM05D003583 ORTHO05D004169 1.6e-30 137.5 137 58.4
CDE06G0189 Ceratophyllum demersum HOM05D003583 ORTHO05D004169 2.5e-28 130.2 164 51.8
RcHm_v2.0_Chr5g0045161 Rosa chinensis HOM05D003583 ORTHO05D004169 8.9e-26 121.7 77 70.1
CANSAT01G3274 Cannabis sativa HOM05D003583 ORTHO05D004169 1.5e-25 120.9 111 56.8
RcHm_v2.0_Chr5g0045171 Rosa chinensis HOM05D003583 ORTHO05D004169 1.3e-24 117.9 77 68.8
Cfa015657 Carpinus fangiana HOM05D003583 ORTHO05D004169 1.7e-24 117.5 78 70.5
Nn8g40493 Nelumbo nucifera HOM05D003583 ORTHO05D004169 3.7e-24 116.3 145 49.0
RcHm_v2.0_Chr6g0245631 Rosa chinensis HOM05D003583 ORTHO05D004169 4.1e-23 112.8 77 67.5
TAR633G0104 Trochodendron aralioides HOM05D003583 ORTHO05D004169 5.4e-23 112.5 95 57.9
Nn5g26790 Nelumbo nucifera HOM05D003583 ORTHO05D004169 3.0e-21 106.7 126 53.2
RcHm_v2.0_Chr1g0319631 Rosa chinensis HOM05D003583 ORTHO05D004169 6.6e-21 105.5 77 64.9
Nn6g33306 Nelumbo nucifera HOM05D003583 ORTHO05D004169 1.5e-20 104.4 192 47.4
Zm00001eb115380 Zea mays HOM05D003583 ORTHO05D004169 7.3e-20 102.1 98 55.1
Nn2g10235 Nelumbo nucifera HOM05D003583 ORTHO05D004169 1.2e-17 94.7 118 51.7
Nn7g37781 Nelumbo nucifera HOM05D003583 ORTHO05D004169 3.4e-17 93.2 89 58.4
Cre16.g648800 Chlamydomonas reinhardtii HOM05D003583 ORTHO05D004169 1.2e-14 84.7 111 46.8
Nn2g11337 Nelumbo nucifera HOM05D003583 ORTHO05D004169 6.6e-13 79.0 100 49.0
Rhsim10G0000100 Rhododendron simsii HOM05D000576 ORTHO05D000368 1.6e-11 74.3 73 60.3
RcHm_v2.0_Chr5g0072291 Rosa chinensis HOM05D003583 ORTHO05D004169 4.7e-11 72.8 71 53.5
PSO210G6806 Papaver somniferum HOM05D002790 ORTHO05D003033 2.7e-06 57.0 102 35.3
PSO210G2567 Papaver somniferum HOM05D002790 ORTHO05D003033 7.8e-06 55.5 102 34.3


User provided reference genes

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