Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2596 Punica granatum HOM05D006127 ORTHO05D007465 0.0e+00 1076.2 543 100.0
COL.COLO4_30292 Corchorus olitorius HOM05D006127 ORTHO05D007465 2.5e-197 692.6 568 66.2
Ciclev10004691m.g Citrus clementina HOM05D006127 ORTHO05D007465 3.2e-197 692.2 556 67.3
Thecc.03G186000 Theobroma cacao HOM05D006127 ORTHO05D007465 4.2e-197 691.8 565 66.7
Gorai.003G069400 Gossypium raimondii HOM05D006127 ORTHO05D007465 3.5e-196 688.7 563 65.9
Gohir.A11G225200 Gossypium hirsutum HOM05D006127 ORTHO05D007465 1.9e-194 682.9 563 65.2
Gohir.D11G229300 Gossypium hirsutum HOM05D006127 ORTHO05D007465 2.5e-194 682.6 563 65.0
Manes.06G153500 Manihot esculenta HOM05D006127 ORTHO05D007465 4.8e-193 678.3 568 64.6
MD07G1280200 Malus domestica HOM05D006127 ORTHO05D007465 1.1e-192 677.2 558 66.1
TWI23G0320 Tripterygium wilfordii HOM05D006127 ORTHO05D007465 9.0e-192 674.1 562 65.1
Cfa016302 Carpinus fangiana HOM05D006127 ORTHO05D007465 4.5e-191 671.8 543 66.7
Sabra17G0124200 Salix brachista HOM05D006127 ORTHO05D007465 2.9e-190 669.1 561 63.1
Atru.chr1.338 Acer truncatum HOM05D006127 ORTHO05D007465 3.8e-190 668.7 538 66.4
Eucgr.A02719 Eucalyptus grandis HOM05D006127 ORTHO05D007465 3.2e-189 665.6 558 64.5
Prupe.2G302400 Prunus persica HOM05D006127 ORTHO05D007465 4.2e-189 665.2 554 65.9
Dinv35267 Davidia involucrata HOM05D006127 ORTHO05D007465 9.4e-189 664.1 534 66.7
Potri.004G072100 Populus trichocarpa HOM05D006127 ORTHO05D007465 6.7e-187 657.9 502 68.1
Potri.017G148900 Populus trichocarpa HOM05D006127 ORTHO05D007465 6.7e-187 657.9 558 63.3
QL09p012458 Quercus lobata HOM05D006127 ORTHO05D007465 3.1e-184 649.0 480 70.6
Dinv28380 Davidia involucrata HOM05D006127 ORTHO05D007465 2.0e-183 646.4 531 66.1
CSS0002355 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 5.9e-183 644.8 528 65.3
CiPaw.06G004100 Carya illinoinensis HOM05D006127 ORTHO05D007465 1.1e-181 640.6 541 64.9
CSS0021566 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 4.2e-181 638.6 532 64.8
THA.LOC104818243 Tarenaya hassleriana HOM05D006127 ORTHO05D007465 1.6e-180 636.7 533 63.8
MD01G1210100 Malus domestica HOM05D006127 ORTHO05D007465 4.7e-180 635.2 447 72.3
TAR374G0777 Trochodendron aralioides HOM05D006127 ORTHO05D007465 3.0e-179 632.5 475 67.6
MSTRG.8699 Avicennia marina HOM05D006127 ORTHO05D007465 5.1e-179 631.7 550 62.2
AT5G62650 Arabidopsis thaliana HOM05D006127 ORTHO05D007465 8.8e-179 630.9 541 63.0
Carub.0008s2341 Capsella rubella HOM05D006127 ORTHO05D007465 1.5e-178 630.2 544 62.5
Phvul.004G105900 Phaseolus vulgaris HOM05D006127 ORTHO05D007465 2.0e-178 629.8 558 62.9
AL8G39630 Arabidopsis lyrata HOM05D006127 ORTHO05D007465 1.3e-177 627.1 501 66.1
Nitab4.5_0000472g0230 Nicotiana tabacum HOM05D006127 ORTHO05D007465 1.3e-177 627.1 463 70.8
CsaV3_5G001020 Cucumis sativus L. HOM05D006127 ORTHO05D007465 8.2e-177 624.4 536 63.2
Glyma.09G129300 Glycine max HOM05D006127 ORTHO05D007465 8.2e-177 624.4 555 62.2
HanXRQChr00c0486g0575011 Helianthus annuus HOM05D006127 ORTHO05D007465 2.4e-176 622.9 511 62.0
Actinidia34165 Actinidia chinensis HOM05D006127 ORTHO05D007465 3.1e-176 622.5 559 62.4
CARHR276460 Cardamine hirsuta HOM05D006127 ORTHO05D007465 7.0e-176 621.3 533 62.5
CiPaw.05G261300 Carya illinoinensis HOM05D006127 ORTHO05D007465 2.6e-175 619.4 447 70.0
Gorai.006G199600 Gossypium raimondii HOM05D006127 ORTHO05D007465 4.5e-175 618.6 546 61.2
Lj2g0027649 Lotus japonicus HOM05D006127 ORTHO05D007465 4.5e-175 618.6 555 61.4
Sabra04G0047500 Salix brachista HOM05D006127 ORTHO05D007465 4.5e-175 618.6 625 57.8
PGSC0003DMG400009503 Solanum tuberosum HOM05D006127 ORTHO05D007465 7.7e-175 617.8 463 70.4
Medtr6g053110 Medicago truncatula HOM05D006127 ORTHO05D007465 1.0e-174 617.5 547 62.7
Aa31LG11G990 Aethionema arabicum HOM05D006127 ORTHO05D007465 1.7e-174 616.7 543 61.5
Ca_26803_v3 Cicer arietinum L. HOM05D006127 ORTHO05D007465 1.7e-174 616.7 559 60.6
Lalb_Chr01g0009501 Lupinus albus HOM05D006127 ORTHO05D007465 1.7e-174 616.7 527 63.4
Peaxi162Scf00444g00314 Petunia axillaris HOM05D006127 ORTHO05D007465 1.7e-174 616.7 465 70.3
Sed0008008 Sechium edule HOM05D006127 ORTHO05D007465 2.2e-174 616.3 534 62.4
ECA232G4568 Erigeron canadensis HOM05D006127 ORTHO05D007465 2.9e-174 615.9 472 66.1
Thhalv10003967m.g Eutrema salsugineum HOM05D006127 ORTHO05D007465 2.9e-174 615.9 544 61.0
Gohir.D09G177600 Gossypium hirsutum HOM05D006127 ORTHO05D007465 3.8e-174 615.5 546 60.8
Lj1A1007G54 Lonicera japonica HOM05D006127 ORTHO05D007465 1.1e-173 614.0 489 66.7
RcHm_v2.0_Chr1g0378611 Rosa chinensis HOM05D006127 ORTHO05D007465 1.1e-173 614.0 542 63.3
Lsat_1_v5_gn_9_56840 Lactuca sativa HOM05D006127 ORTHO05D007465 1.9e-173 613.2 463 68.0
Sp2g25830 Schrenkiella parvula HOM05D006127 ORTHO05D007465 1.9e-173 613.2 544 60.8
Solyc03g007620.3 Solanum lycopersicum HOM05D006127 ORTHO05D007465 3.2e-173 612.5 463 69.1
Nitab4.5_0001331g0020 Nicotiana tabacum HOM05D006127 ORTHO05D007465 4.2e-173 612.1 472 68.9
Sopen03g003570 Solanum pennellii HOM05D006127 ORTHO05D007465 7.2e-173 611.3 463 69.1
MELO3C005842.2 Cucumis melo HOM05D006127 ORTHO05D007465 1.6e-172 610.1 536 61.6
ClCG01G000890 Citrullus lanatus HOM05D006127 ORTHO05D007465 2.1e-172 609.8 534 62.7
Sc13g0009280 Simmondsia chinensis HOM05D006127 ORTHO05D007465 3.0e-171 605.9 493 63.5
FAN06G1782 Fragaria x ananassa HOM05D006127 ORTHO05D007465 6.7e-171 604.7 521 64.1
FAN03G3352 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.1e-170 604.0 518 63.9
CAN.G236.3 Capsicum annuum HOM05D006127 ORTHO05D007465 1.5e-170 603.6 463 68.7
FAN03G2078 Fragaria x ananassa HOM05D006127 ORTHO05D007465 2.0e-170 603.2 518 63.9
Haze_00059 Corylus avellana HOM05D006127 ORTHO05D007465 4.4e-170 602.1 539 62.3
FAN10G2357 Fragaria x ananassa HOM05D006127 ORTHO05D007465 4.4e-170 602.1 519 64.4
FAN06G3350 Fragaria x ananassa HOM05D006127 ORTHO05D007465 7.4e-170 601.3 518 63.5
BolC3t18667H Brassica oleracea HOM05D006127 ORTHO05D007465 1.3e-169 600.5 530 61.9
FAN10G0315 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.3e-169 600.5 519 64.4
C03p64120 Brassica napus HOM05D006127 ORTHO05D007465 1.7e-169 600.1 530 61.9
Gohir.A09G182900 Gossypium hirsutum HOM05D006127 ORTHO05D007465 2.8e-169 599.4 535 61.1
BraA06t25889Z Brassica rapa HOM05D006127 ORTHO05D007465 4.8e-169 598.6 495 64.4
BcaB02g09667 Brassica carinata HOM05D006127 ORTHO05D007465 1.1e-168 597.4 531 60.8
A06p29390 Brassica napus HOM05D006127 ORTHO05D007465 1.1e-168 597.4 495 64.2
BcaC01g02503 Brassica carinata HOM05D006127 ORTHO05D007465 1.8e-168 596.7 495 64.2
HanXRQChr15g0494171 Helianthus annuus HOM05D006127 ORTHO05D007465 2.0e-167 593.2 529 60.7
Migut.F00277 Erythranthe guttata HOM05D006127 ORTHO05D007465 1.5e-165 587.0 574 57.8
arahy.Tifrunner.gnm1.ann1.HXNP43 Arachis hypogaea HOM05D006127 ORTHO05D007465 8.0e-164 581.3 538 61.3
arahy.Tifrunner.gnm1.ann1.AR9FJK Arachis hypogaea HOM05D006127 ORTHO05D007465 1.4e-163 580.5 544 60.3
DCAR_008898 Daucus carota HOM05D006127 ORTHO05D007465 1.4e-163 580.5 549 58.5
Cc02_g02250 Coffea canephora HOM05D006127 ORTHO05D007465 6.8e-163 578.2 442 67.4
Nn6g32416 Nelumbo nucifera HOM05D006127 ORTHO05D007465 2.6e-162 576.2 517 60.2
PSO478G4852 Papaver somniferum HOM05D006127 ORTHO05D007465 3.4e-162 575.9 478 61.3
PSO266G0017 Papaver somniferum HOM05D006127 ORTHO05D007465 1.7e-161 573.5 478 60.9
Glyma.16G177100 Glycine max HOM05D006127 ORTHO05D007465 2.8e-161 572.8 549 59.4
EL10Ac3g05405 Beta vulgaris HOM05D006127 ORTHO05D007465 4.8e-161 572.0 543 58.6
AUR62031438 Chenopodium quinoa HOM05D006127 ORTHO05D007465 1.8e-160 570.1 467 63.2
Cpa.g.sc107.127 Carica papaya HOM05D006127 ORTHO05D007465 1.0e-158 564.3 449 65.9
Aqoxy7G00200 Aquilegia oxysepala HOM05D006127 ORTHO05D007465 5.5e-157 558.5 461 64.0
unitig_747.g21859 Utricularia gibba HOM05D006127 ORTHO05D007465 1.0e-155 554.3 564 56.2
SGA_v2.0_scaffold60G21123 Striga asiatica HOM05D006127 ORTHO05D007465 7.5e-154 548.1 570 55.8
GSVIVG01028824001 Vitis vinifera HOM05D006127 ORTHO05D007465 2.4e-152 543.1 443 64.6
Oeu003330.1 Olea europaea HOM05D006127 ORTHO05D007465 4.5e-151 538.9 420 65.2
Hund04798 Selenicereus undatus HOM05D006127 ORTHO05D007465 7.7e-151 538.1 681 48.9
Ah.07g206460 Amaranthus hybridus HOM05D006127 ORTHO05D007465 1.7e-150 537.0 529 56.7
ATR0721G168 Amborella trichopoda HOM05D006127 ORTHO05D007465 1.4e-144 517.3 549 54.5
TPR.G9177 Trifolium pratense HOM05D006127 ORTHO05D007465 5.6e-141 505.4 328 76.8
Ah.13g069260 Amaranthus hybridus HOM05D006127 ORTHO05D007465 6.2e-140 501.9 415 61.4
CDE04G3725 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 1.5e-138 497.3 483 54.0
Zm00001eb119480 Zea mays HOM05D006127 ORTHO05D007465 2.0e-138 496.9 521 53.6
Psat0s2186g0040 Pisum sativum HOM05D006127 ORTHO05D007465 4.4e-138 495.7 383 69.7
AUR62021102 Chenopodium quinoa HOM05D006127 ORTHO05D007465 5.8e-138 495.4 467 57.6
FvH4_7g30450 Fragaria vesca HOM05D006127 ORTHO05D007465 4.1e-136 489.2 350 70.9
vmacro06616 Vaccinium macrocarpon HOM05D006127 ORTHO05D007465 3.9e-134 482.6 535 53.5
Rhsim03G0192200 Rhododendron simsii HOM05D006127 ORTHO05D007465 2.8e-132 476.5 541 52.3
HPP92_008801 Vanilla planifolia HOM05D006127 ORTHO05D007465 1.1e-131 474.6 504 52.0
Oeu027861.1 Olea europaea HOM05D006127 ORTHO05D007465 7.8e-111 405.2 440 52.5
BcaB02g09671 Brassica carinata HOM05D006127 ORTHO05D007465 5.4e-104 382.5 459 50.8
VMungo0464G0768 Vigna mungo HOM05D006127 ORTHO05D007465 5.4e-104 382.5 322 64.3
Nn1g01683 Nelumbo nucifera HOM05D006127 ORTHO05D007465 5.3e-99 365.9 489 46.0
HPP92_005266 Vanilla planifolia HOM05D006127 ORTHO05D007465 5.3e-99 365.9 410 49.0
CDE03G0317 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 3.1e-91 340.1 235 66.4
SGA_v2.0_scaffold192G40622 Striga asiatica HOM05D006127 ORTHO05D007465 5.3e-91 339.3 259 66.0
FAN01G1207 Fragaria x ananassa HOM05D006127 ORTHO05D007465 9.0e-75 285.4 227 65.2
Os01g0225300 Oryza sativa ssp. japonica HOM05D006127 ORTHO05D007465 3.7e-68 263.5 300 49.3
AagrBONN_evm.TU.Sc2ySwM_368.2100 Anthoceros agrestis HOM05D006127 ORTHO05D007465 3.1e-67 260.4 393 39.4
Mapoly0009s0032 Marchantia polymorpha HOM05D006127 ORTHO05D007465 1.2e-66 258.5 331 42.9
Pp3c17_22580 Physcomitrium patens HOM05D006127 ORTHO05D007465 1.0e-57 228.8 553 30.2
arahy.Tifrunner.gnm1.ann1.KML1I1 Arachis hypogaea HOM05D006127 ORTHO05D007465 4.2e-48 196.8 240 48.3
Cfa002216 Carpinus fangiana HOM05D006127 ORTHO05D007465 3.0e-38 164.1 234 44.4
SEGI_03634 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 6.3e-36 156.4 123 57.7
AL8G39600 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 9.2e-35 152.5 95 75.8
SMO266G0103 Selaginella moellendorffii HOM05D006127 ORTHO05D007465 4.3e-32 143.7 192 35.9
TPR.G9175 Trifolium pratense HOM05D006127 ORTHO05D007465 5.0e-25 120.2 80 70.0
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 1.5e-24 118.6 58 93.1
TPR.G27774 Trifolium pratense HOM05D006127 ORTHO05D007465 7.3e-24 116.3 124 53.2
SEGI_25179 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 5.0e-17 93.6 83 55.4
Ah.13g069250 Amaranthus hybridus HOM05D006127 ORTHO05D007465 1.9e-16 91.7 147 44.9
Aqoxy1G04253 Aquilegia oxysepala HOM05D006127 ORTHO05D078839 1.8e-06 58.5 49 61.2


User provided reference genes

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