Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2582 Punica granatum HOM05D008087 ORTHO05D010187 2.1e-101 372.5 205 100.0
Cfa002992 Carpinus fangiana HOM05D008087 ORTHO05D010187 5.5e-65 251.5 209 67.0
QL11p000704 Quercus lobata HOM05D008087 ORTHO05D010187 3.9e-63 245.4 208 65.9
Thecc.09G077500 Theobroma cacao HOM05D008087 ORTHO05D010187 7.4e-62 241.1 209 65.1
Cpa.g.sc28.44 Carica papaya HOM05D008087 ORTHO05D010187 9.6e-62 240.7 210 63.3
TWI34G0776 Tripterygium wilfordii HOM05D008087 ORTHO05D010187 9.6e-62 240.7 209 63.6
Ciclev10009482m.g Citrus clementina HOM05D008087 ORTHO05D010187 2.1e-61 239.6 209 62.7
Sabra18G0058300 Salix brachista HOM05D008087 ORTHO05D010187 3.7e-61 238.8 211 64.0
CiPaw.03G206800 Carya illinoinensis HOM05D008087 ORTHO05D010187 1.2e-59 233.8 210 63.3
COL.COLO4_18101 Corchorus olitorius HOM05D008087 ORTHO05D010187 1.2e-59 233.8 209 63.2
Eucgr.C03187 Eucalyptus grandis HOM05D008087 ORTHO05D010187 1.2e-59 233.8 209 63.2
Phvul.003G131000 Phaseolus vulgaris HOM05D008087 ORTHO05D010187 2.6e-59 232.6 207 64.7
Gorai.010G088200 Gossypium raimondii HOM05D008087 ORTHO05D010187 3.4e-59 232.3 209 63.6
Potri.018G065700 Populus trichocarpa HOM05D008087 ORTHO05D010187 5.9e-59 231.5 211 62.1
CSS0002060 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 1.0e-58 230.7 209 64.1
Duzib168G2281 Durio zibethinus HOM05D008087 ORTHO05D010187 1.3e-58 230.3 209 64.1
CSS0037579 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 1.7e-58 229.9 209 64.1
Gohir.A06G076300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 3.8e-58 228.8 209 63.6
Lj4g0020355 Lotus japonicus HOM05D008087 ORTHO05D010187 5.0e-58 228.4 207 62.8
Gohir.D06G075300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 6.5e-58 228.0 209 63.2
Manes.16G095600 Manihot esculenta HOM05D008087 ORTHO05D010187 4.2e-57 225.3 209 61.2
Glyma.13G110250 Glycine max HOM05D008087 ORTHO05D010187 7.2e-57 224.6 204 62.3
VMungo1215G2436 Vigna mungo HOM05D008087 ORTHO05D010187 7.2e-57 224.6 207 62.3
Hma1.2p1_0179F.1_g079550 Hydrangea macrophylla HOM05D008087 ORTHO05D010187 9.3e-57 224.2 209 60.8
Prupe.7G199300 Prunus persica HOM05D008087 ORTHO05D010187 1.2e-56 223.8 212 61.8
DCAR_024749 Daucus carota HOM05D008087 ORTHO05D010187 6.1e-56 221.5 206 59.2
MD15G1217200 Malus domestica HOM05D008087 ORTHO05D010187 6.1e-56 221.5 212 60.4
Lj4P912T21 Lonicera japonica HOM05D008087 ORTHO05D010187 2.3e-55 219.5 210 60.0
Lalb_Chr07g0181171 Lupinus albus HOM05D008087 ORTHO05D010187 3.0e-55 219.2 207 59.9
Glyma.17G049450 Glycine max HOM05D008087 ORTHO05D010187 5.1e-55 218.4 204 61.8
TAR383G0588 Trochodendron aralioides HOM05D008087 ORTHO05D010187 1.9e-54 216.5 209 59.8
arahy.Tifrunner.gnm1.ann1.TB6UZQ Arachis hypogaea HOM05D008087 ORTHO05D010187 3.3e-54 215.7 207 58.9
Psat4g017680 Pisum sativum HOM05D008087 ORTHO05D010187 5.7e-54 214.9 209 60.8
GSVIVG01015086001 Vitis vinifera HOM05D004023 ORTHO05D004681 1.6e-53 213.4 198 60.1
Cc06_g12130 Coffea canephora HOM05D008087 ORTHO05D010187 2.2e-53 213.0 203 59.6
Nitab4.5_0002966g0020 Nicotiana tabacum HOM05D008087 ORTHO05D010187 2.2e-53 213.0 208 59.1
MSTRG.19463 Avicennia marina HOM05D008087 ORTHO05D010187 1.1e-52 210.7 203 59.1
Oeu049121.1 Olea europaea HOM05D008087 ORTHO05D010187 1.8e-52 209.9 207 58.5
RcHm_v2.0_Chr2g0094891 Rosa chinensis HOM05D008087 ORTHO05D010187 3.1e-52 209.1 206 60.2
SalBow6G2426 Salvia bowleyana HOM05D008087 ORTHO05D010187 1.5e-51 206.8 205 58.5
Nn8g38653 Nelumbo nucifera HOM05D008087 ORTHO05D010187 2.0e-51 206.5 209 58.9
CANSAT56G3514 Cannabis sativa HOM05D008087 ORTHO05D010187 4.5e-51 205.3 212 57.5
Rhsim05G0007800 Rhododendron simsii HOM05D008087 ORTHO05D010187 1.3e-50 203.8 209 57.9
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 1.2e-48 197.2 185 58.4
PGR044G2297 Punica granatum HOM05D008087 ORTHO05D010187 3.6e-48 195.7 126 84.1
TPR.G12579 Trifolium pratense HOM05D008087 ORTHO05D010187 3.6e-48 195.7 207 56.0
AUR62028937 Chenopodium quinoa HOM05D008087 ORTHO05D010187 3.9e-47 192.2 210 54.8
PGSC0003DMG400013001 Solanum tuberosum HOM05D008087 ORTHO05D010187 3.9e-47 192.2 209 53.6
Solyc07g041770.1 Solanum lycopersicum HOM05D008087 ORTHO05D010187 8.8e-47 191.0 209 52.6
PSO135G0253 Papaver somniferum HOM05D008087 ORTHO05D010187 9.7e-46 187.6 208 51.4
Sopen07g021260 Solanum pennellii HOM05D008087 ORTHO05D010187 1.3e-45 187.2 209 52.6
Medtr4g125370 Medicago truncatula HOM05D008087 ORTHO05D010187 6.3e-45 184.9 207 55.6
Sc08g0008880 Simmondsia chinensis HOM05D008087 ORTHO05D010187 6.3e-45 184.9 205 55.1
Migut.J00928 Erythranthe guttata HOM05D008087 ORTHO05D010187 1.1e-44 184.1 197 53.8
Ah.09g231600 Amaranthus hybridus HOM05D008087 ORTHO05D010187 1.8e-44 183.3 168 60.1
Eucgr.L02787 Eucalyptus grandis HOM05D008087 ORTHO05D010187 1.8e-44 183.3 209 55.0
MBI19_g11825_MAGBIO Magnolia biondii HOM05D008087 ORTHO05D010187 1.0e-42 177.6 209 49.8
Aqoxy1G01322 Aquilegia oxysepala HOM05D008087 ORTHO05D010187 1.7e-42 176.8 207 50.2
Duzib187G0811 Durio zibethinus HOM05D008087 ORTHO05D010187 3.8e-42 175.6 159 59.1
CSS0034066 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 8.5e-42 174.5 169 59.8
Ca_21320_v3 Cicer arietinum L. HOM05D008087 ORTHO05D010187 1.2e-40 170.6 207 52.2
AT3G42725 Arabidopsis thaliana HOM05D008087 ORTHO05D010187 1.1e-38 164.1 207 49.8
AL5G20930 Arabidopsis lyrata HOM05D008087 ORTHO05D010187 2.0e-38 163.3 205 49.3
Lsat_1_v5_gn_7_35101 Lactuca sativa HOM05D004023 ORTHO05D004681 3.1e-36 156.0 203 50.7
THA.LOC104811009 Tarenaya hassleriana HOM05D008087 ORTHO05D010187 7.7e-35 151.4 209 47.8
Nitab4.5_0000343g0200 Nicotiana tabacum HOM05D008087 ORTHO05D010187 1.6e-19 100.5 106 52.8
Peaxi162Scf00127g00202 Petunia axillaris HOM05D008087 ORTHO05D010187 2.7e-19 99.8 106 51.9
Zm00001eb005810 Zea mays HOM05D008087 ORTHO05D010187 5.9e-19 98.6 206 38.8
HPP92_026302 Vanilla planifolia HOM05D008087 ORTHO05D010187 5.5e-17 92.0 203 37.9
Ah.14g084950 Amaranthus hybridus HOM05D008087 ORTHO05D010187 6.8e-15 85.1 108 46.3
MD15G1091800 Malus domestica HOM05D008087 ORTHO05D010187 1.2e-14 84.3 84 53.6
PSO724G0984 Papaver somniferum HOM05D008087 ORTHO05D010187 4.4e-14 82.4 105 44.8
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 5.6e-09 65.5 53 60.4
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 7.3e-09 65.1 91 44.0
ATR0598G047 Amborella trichopoda HOM05D008087 ORTHO05D010187 4.0e-07 59.3 116 33.6
Ciclev10030215m.g Citrus clementina HOM05D008087 ORTHO05D010187 2.0e-06 57.0 80 45.0
Mapoly0038s0092 Marchantia polymorpha HOM05D016812 ORTHO05D010187 4.4e-06 55.8 190 27.9


User provided reference genes

Program Settings