Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 3.1e-240 834.7 423 100.0
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 2.2e-124 449.9 437 56.3
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 3.4e-122 442.6 425 55.5
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 6.7e-118 428.3 425 54.6
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 2.8e-116 422.9 427 55.3
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 3.1e-115 419.5 426 53.8
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 7.2e-112 408.3 427 52.7
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 6.1e-111 405.2 425 53.9
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 8.0e-111 404.8 443 51.9
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 1.4e-110 404.1 421 53.7
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 1.4e-110 404.1 427 52.7
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 1.2e-109 401.0 430 51.2
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 1.4e-107 394.0 429 51.3
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 1.8e-107 393.7 429 52.0
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 1.6e-106 390.6 428 50.9
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 1.3e-105 387.5 434 52.1
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 5.0e-105 385.6 434 50.7
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 1.1e-104 384.4 425 52.2
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 3.2e-104 382.9 428 52.3
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 3.6e-103 379.4 422 51.7
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 1.4e-102 377.5 440 49.3
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 1.2e-101 374.4 425 51.1
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 2.0e-101 373.6 443 50.1
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 1.3e-100 370.9 421 51.3
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 6.3e-100 368.6 431 51.0
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 3.1e-99 366.3 425 50.4
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 7.0e-99 365.2 428 47.9
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 7.7e-98 361.7 428 47.7
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 2.9e-97 359.8 437 45.8
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 6.6e-97 358.6 428 47.4
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 8.6e-97 358.2 421 47.3
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 8.6e-97 358.2 421 50.1
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 8.6e-97 358.2 421 49.9
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 1.1e-96 357.8 421 49.9
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 5.5e-96 355.5 425 50.8
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 7.2e-96 355.1 421 49.6
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 9.5e-96 354.8 421 46.3
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 4.7e-95 352.4 425 46.8
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 2.3e-94 350.1 425 46.6
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 3.0e-94 349.7 421 45.8
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 2.6e-93 346.7 348 54.9
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 3.4e-93 346.3 421 48.9
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 9.8e-93 344.7 362 52.2
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 1.4e-91 340.9 422 48.3
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 1.4e-91 340.9 453 46.4
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 3.5e-90 336.3 428 47.4
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 4.5e-90 335.9 397 48.1
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 2.3e-89 333.6 425 46.6
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 6.6e-89 332.0 446 45.3
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 1.5e-88 330.9 402 50.0
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 4.3e-88 329.3 430 47.0
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 7.3e-88 328.6 424 45.0
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 3.6e-87 326.2 426 45.5
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 4.0e-86 322.8 415 47.2
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 4.0e-86 322.8 424 43.9
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 1.7e-84 317.4 418 47.1
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 3.7e-84 316.2 401 46.1
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 1.4e-83 314.3 433 44.3
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 4.1e-83 312.8 426 44.8
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 9.2e-83 311.6 330 53.3
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 1.2e-82 311.2 430 46.3
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 4.6e-82 309.3 443 43.3
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 4.6e-82 309.3 424 44.6
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 4.6e-82 309.3 424 44.6
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 3.0e-81 306.6 437 41.0
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 8.6e-81 305.1 436 45.2
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 8.6e-81 305.1 354 49.4
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 1.1e-80 304.7 440 41.4
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 1.1e-80 304.7 424 43.2
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 4.3e-80 302.8 274 56.9
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 1.2e-79 301.2 428 44.4
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 1.2e-79 301.2 428 42.5
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 1.6e-79 300.8 427 42.4
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 1.4e-78 297.7 433 43.4
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 1.4e-78 297.7 425 43.5
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 2.3e-78 297.0 349 45.6
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 2.3e-78 297.0 422 42.4
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 5.2e-78 295.8 482 40.7
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 6.8e-78 295.4 430 43.0
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 2.0e-77 293.9 442 42.3
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 1.3e-76 291.2 436 41.5
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 1.7e-76 290.8 439 41.5
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 2.9e-76 290.0 449 40.1
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 1.9e-75 287.3 423 42.3
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 2.4e-75 287.0 437 40.5
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 3.2e-75 286.6 441 41.0
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 9.2e-75 285.0 421 42.0
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 1.6e-74 284.3 442 40.3
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 1.3e-73 281.2 440 39.8
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 3.0e-73 280.0 440 39.5
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 6.6e-73 278.9 428 42.5
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 6.6e-73 278.9 431 42.0
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 1.1e-70 271.6 430 39.8
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 1.4e-70 271.2 420 38.8
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 3.1e-70 270.0 403 40.9
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 5.2e-70 269.2 440 41.4
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 6.8e-70 268.9 418 41.6
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 1.5e-69 267.7 425 39.8
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 2.6e-69 266.9 431 39.7
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 3.4e-69 266.5 431 38.7
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 4.4e-69 266.2 431 38.7
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 1.3e-68 264.6 431 42.5
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 2.9e-68 263.5 428 40.0
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 6.4e-68 262.3 430 38.4
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 6.4e-68 262.3 428 39.5
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 8.3e-68 261.9 430 39.8
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 4.1e-67 259.6 416 38.7
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 1.2e-66 258.1 430 38.1
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 7.8e-66 255.4 426 36.9
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 4.3e-64 249.6 429 40.1
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 6.8e-62 242.3 270 48.1
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 4.4e-61 239.6 428 38.6
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 3.8e-60 236.5 434 36.9
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 6.4e-60 235.7 426 36.4
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 1.9e-59 234.2 270 47.0
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 3.2e-59 233.4 439 38.0
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 5.1e-57 226.1 412 38.3
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 4.3e-56 223.0 411 35.0
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 7.3e-56 222.2 413 38.7
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 9.6e-56 221.9 414 33.3
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 1.2e-53 214.9 364 36.0
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 6.4e-52 209.1 405 33.6
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 4.2e-51 206.5 334 40.4
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 7.1e-51 205.7 417 34.8
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 7.8e-50 202.2 174 61.5
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 2.1e-47 194.1 351 39.6
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 1.1e-43 181.8 374 32.1
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 5.1e-41 172.9 240 45.4
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 7.4e-40 169.1 276 40.9
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 6.2e-39 166.0 287 38.7
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 6.4e-36 156.0 234 38.5
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 6.4e-36 156.0 169 50.9
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 1.1e-30 138.7 198 39.9
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 1.1e-30 138.7 257 37.4
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 1.4e-30 138.3 376 30.9
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 5.5e-27 126.3 158 46.2
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 7.1e-27 125.9 158 46.2
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 1.6e-26 124.8 158 45.6
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 1.6e-26 124.8 158 45.6
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 2.3e-25 120.9 150 46.7
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 1.1e-16 92.0 86 58.1
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 2.5e-16 90.9 129 45.7
Psat1g163200 Pisum sativum HOM05D000871 ORTHO05D008698 3.3e-16 90.5 162 35.2
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 4.1e-14 83.6 172 33.7
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 1.7e-12 78.2 60 66.7
arahy.Tifrunner.gnm1.ann1.59R5K9 Arachis hypogaea HOM05D004053 ORTHO05D005065 5.5e-11 73.2 83 48.2
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 1.6e-10 71.6 63 52.4
VMungo0540G1158 Vigna mungo HOM05D004053 ORTHO05D005065 3.6e-10 70.5 109 36.7
C08p10690 Brassica napus HOM05D004053 ORTHO05D031745 6.1e-10 69.7 80 45.0
BolC8t48741H Brassica oleracea HOM05D004053 ORTHO05D031745 6.1e-10 69.7 80 45.0
Hma1.2p1_0377F.1_g139390 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 1.4e-09 68.6 56 51.8
arahy.Tifrunner.gnm1.ann1.HAWP0L Arachis hypogaea HOM05D019977 ORTHO05D005065 5.1e-09 66.6 144 33.3
BcaC02g12834 Brassica carinata HOM05D004053 ORTHO05D005065 2.6e-08 64.3 67 49.3
C04p39350 Brassica napus HOM05D004053 ORTHO05D005065 2.6e-08 64.3 67 49.3
BolC4t25502H Brassica oleracea HOM05D004053 ORTHO05D005065 2.6e-08 64.3 67 49.3
BcaB06g27908 Brassica carinata HOM05D000021 ORTHO05D000010 3.3e-08 63.9 71 43.7
unitig_22.g6690 Utricularia gibba HOM05D004053 ORTHO05D005065 5.7e-08 63.2 267 26.6
Eucgr.H03488 Eucalyptus grandis HOM05D005016 ORTHO05D005740 9.7e-08 62.4 138 34.1
BcaC01g06721 Brassica carinata HOM05D004053 ORTHO05D005065 1.3e-07 62.0 129 34.1
CARHR002650 Cardamine hirsuta HOM05D004053 ORTHO05D005065 1.3e-07 62.0 82 34.1
Eucgr.H01039 Eucalyptus grandis HOM05D005016 ORTHO05D005740 1.7e-07 61.6 130 37.7
A01p37840 Brassica napus HOM05D004053 ORTHO05D005065 3.7e-07 60.5 78 42.3
BcaC09g50477 Brassica carinata HOM05D004053 ORTHO05D005065 4.8e-07 60.1 70 45.7


User provided reference genes

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