Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2548 Punica granatum HOM05D005081 ORTHO05D005506 3.3e-130 468.4 240 100.0
Eucgr.C02188 Eucalyptus grandis HOM05D005081 ORTHO05D005506 5.3e-51 205.3 267 50.2
GSVIVG01035163001 Vitis vinifera HOM05D005081 ORTHO05D005506 9.3e-48 194.5 239 52.3
Actinidia29969 Actinidia chinensis HOM05D005081 ORTHO05D005506 1.9e-45 186.8 247 49.0
Cpa.g.sc115.44 Carica papaya HOM05D005081 ORTHO05D005506 1.9e-45 186.8 237 51.5
AUR62033253 Chenopodium quinoa HOM05D005081 ORTHO05D005506 2.8e-44 183.0 243 48.6
AUR62021338 Chenopodium quinoa HOM05D005081 ORTHO05D005506 6.9e-43 178.3 243 48.1
QL11p009451 Quercus lobata HOM05D005081 ORTHO05D005506 2.0e-42 176.8 238 49.6
Sabra06G0052800 Salix brachista HOM05D005081 ORTHO05D005506 1.3e-41 174.1 269 45.7
TWI32G0620 Tripterygium wilfordii HOM05D005081 ORTHO05D005506 1.3e-41 174.1 241 48.1
TAR625G0352 Trochodendron aralioides HOM05D005081 ORTHO05D005506 1.7e-41 173.7 239 48.1
MBI16_g18201_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 2.2e-41 173.3 240 48.8
Oeu008926.1 Olea europaea HOM05D005081 ORTHO05D005506 3.8e-41 172.6 241 48.1
FAN12G4058 Fragaria x ananassa HOM05D005081 ORTHO05D005506 6.4e-41 171.8 241 47.3
FvH4_4g06450 Fragaria vesca HOM05D005081 ORTHO05D005506 8.4e-41 171.4 241 47.3
FAN07G0684 Fragaria x ananassa HOM05D005081 ORTHO05D005506 8.4e-41 171.4 239 47.3
Rhsim01G0113200 Rhododendron simsii HOM05D005081 ORTHO05D005506 8.4e-41 171.4 249 47.4
Manes.15G189400 Manihot esculenta HOM05D005081 ORTHO05D005506 1.9e-40 170.2 242 47.5
MELO3C017390.2 Cucumis melo HOM05D005081 ORTHO05D005506 3.2e-40 169.5 259 47.5
FAN22G0520 Fragaria x ananassa HOM05D005081 ORTHO05D005506 5.5e-40 168.7 241 47.3
ClCG06G014000 Citrullus lanatus HOM05D005081 ORTHO05D005506 7.1e-40 168.3 256 49.6
Hma1.2p1_0022F.1_g014783 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 9.3e-40 167.9 242 47.5
MSTRG.10457 Avicennia marina HOM05D005081 ORTHO05D005506 2.1e-39 166.8 240 47.9
FAN17G0390 Fragaria x ananassa HOM05D005081 ORTHO05D005506 7.9e-39 164.9 241 46.9
CsaV3_1G032220 Cucumis sativus L. HOM05D005081 ORTHO05D005506 2.3e-38 163.3 262 46.9
Dinv02618 Davidia involucrata HOM05D005081 ORTHO05D005506 3.0e-38 162.9 207 53.1
SGA_v2.0_scaffold63G21842 Striga asiatica HOM05D005081 ORTHO05D005506 3.0e-38 162.9 240 45.4
Solyc05g046310.3 Solanum lycopersicum HOM05D005081 ORTHO05D005506 8.7e-38 161.4 244 43.9
Nitab4.5_0010835g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 2.5e-37 159.8 239 44.8
vmacro20793 Vaccinium macrocarpon HOM05D005081 ORTHO05D005506 2.5e-37 159.8 251 44.6
Potri.018G132600 Populus trichocarpa HOM05D005081 ORTHO05D005506 5.6e-37 158.7 258 41.1
Sopen00g006190 Solanum pennellii HOM05D005081 ORTHO05D005506 5.6e-37 158.7 246 43.9
TAR383G1035 Trochodendron aralioides HOM05D005081 ORTHO05D005506 5.6e-37 158.7 242 45.0
Cc00_g16170 Coffea canephora HOM05D005081 ORTHO05D005506 1.3e-36 157.5 247 46.2
EL10Ac8g18324 Beta vulgaris HOM05D005081 ORTHO05D005506 1.6e-36 157.1 245 44.5
Nitab4.5_0000833g0060 Nicotiana tabacum HOM05D005081 ORTHO05D005506 1.6e-36 157.1 239 45.6
Sed0028150 Sechium edule HOM05D005081 ORTHO05D005506 1.6e-36 157.1 236 49.2
PGSC0003DMG400013692 Solanum tuberosum HOM05D005081 ORTHO05D005506 3.7e-36 156.0 241 44.4
CiPaw.15G154600 Carya illinoinensis HOM05D005081 ORTHO05D005506 4.8e-36 155.6 252 47.2
Actinidia38513 Actinidia chinensis HOM05D005081 ORTHO05D005506 8.2e-36 154.8 233 44.2
RcHm_v2.0_Chr4g0398241 Rosa chinensis HOM05D005081 ORTHO05D005506 1.8e-35 153.7 241 45.6
Nitab4.5_0011475g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 2.4e-35 153.3 252 44.8
Potri.006G070900 Populus trichocarpa HOM05D005081 ORTHO05D005506 5.3e-35 152.1 266 43.2
Aqoxy7G02679 Aquilegia oxysepala HOM05D005081 ORTHO05D005506 9.0e-35 151.4 241 44.8
Oeu044689.1 Olea europaea HOM05D005081 ORTHO05D005506 9.0e-35 151.4 248 43.1
CiPaw.16G103000 Carya illinoinensis HOM05D005081 ORTHO05D005506 2.6e-34 149.8 245 46.9
Ciclev10012648m.g Citrus clementina HOM05D005081 ORTHO05D005506 2.6e-34 149.8 243 43.6
Haze_19038 Corylus avellana HOM05D001026 ORTHO05D003027 2.6e-34 149.8 240 45.4
Hund26317 Selenicereus undatus HOM05D005081 ORTHO05D005506 2.6e-34 149.8 244 45.1
Sc08g0004640 Simmondsia chinensis HOM05D005081 ORTHO05D005506 7.6e-34 148.3 241 43.2
Atru.chr12.2077 Acer truncatum HOM05D005081 ORTHO05D005506 1.0e-33 147.9 241 45.2
SalBow6G6882 Salvia bowleyana HOM05D005081 ORTHO05D005506 1.3e-33 147.5 244 43.9
Peaxi162Scf00889g00221 Petunia axillaris HOM05D005081 ORTHO05D005506 6.5e-33 145.2 247 44.5
Ah.09g230120 Amaranthus hybridus HOM05D005081 ORTHO05D005506 1.1e-32 144.4 260 40.0
MD13G1236100 Malus domestica HOM05D005081 ORTHO05D005506 1.1e-32 144.4 220 45.5
CSS0043250 Camellia sinensis var. sinensis HOM05D005081 ORTHO05D005506 1.4e-32 144.1 246 44.7
Hund09052 Selenicereus undatus HOM05D005081 ORTHO05D005506 1.4e-32 144.1 245 39.2
THA.LOC104808906 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 2.5e-32 143.3 243 42.8
Migut.L01903 Erythranthe guttata HOM05D005081 ORTHO05D005506 3.2e-32 142.9 256 43.8
Lsat_1_v5_gn_7_59220 Lactuca sativa HOM05D005081 ORTHO05D005506 5.5e-32 142.1 240 43.8
Sed0020945 Sechium edule HOM05D005081 ORTHO05D005506 7.1e-32 141.7 247 44.9
CARHR217350 Cardamine hirsuta HOM05D005081 ORTHO05D005506 9.3e-32 141.4 246 41.1
Peaxi162Scf00315g00813 Petunia axillaris HOM05D005081 ORTHO05D005506 1.6e-31 140.6 249 41.8
Ah.14g083630 Amaranthus hybridus HOM05D005081 ORTHO05D005506 2.7e-31 139.8 241 44.0
MSTRG.26528 Avicennia marina HOM05D005081 ORTHO05D005506 2.7e-31 139.8 249 43.4
CANSAT80G2033 Cannabis sativa HOM05D005081 ORTHO05D005506 2.7e-31 139.8 254 42.9
THA.LOC104815319 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 4.6e-31 139.0 247 43.7
THA.LOC104826579 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 4.6e-31 139.0 237 43.9
Prupe.1G067800 Prunus persica HOM05D005081 ORTHO05D005506 2.3e-30 136.7 219 45.7
Nitab4.5_0000053g0180 Nicotiana tabacum HOM05D005081 ORTHO05D005506 5.1e-30 135.6 249 42.6
Sabra18G0112300 Salix brachista HOM05D005081 ORTHO05D005506 8.7e-30 134.8 243 40.7
Hma1.2p1_0022F.1_g014780 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 5.7e-29 132.1 234 41.9
Aa31LG4G14880 Aethionema arabicum HOM05D005081 ORTHO05D005506 7.4e-29 131.7 244 47.1
AL7G44130 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 7.4e-29 131.7 243 43.6
Carub.0007s3114 Capsella rubella HOM05D005081 ORTHO05D005506 7.4e-29 131.7 247 44.1
ECA240G1118 Erigeron canadensis HOM05D005081 ORTHO05D005506 9.7e-29 131.3 246 42.3
Thecc.09G189400 Theobroma cacao HOM05D005081 ORTHO05D005506 1.3e-28 131.0 234 41.0
PSO063G3463 Papaver somniferum HOM05D005081 ORTHO05D005506 1.6e-28 130.6 250 40.4
PSO170G2950 Papaver somniferum HOM05D005081 ORTHO05D005506 1.6e-28 130.6 250 42.0
Duzib170G0058 Durio zibethinus HOM05D005081 ORTHO05D005506 3.7e-28 129.4 232 42.2
MBI13_g31561_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 4.8e-28 129.0 226 39.4
AT5G35320 Arabidopsis thaliana HOM05D005081 ORTHO05D005506 8.2e-28 128.3 244 43.0
HanXRQChr03g0067191 Helianthus annuus HOM05D005081 ORTHO05D005506 1.1e-27 127.9 236 39.4
unitig_899.g15188 Utricularia gibba HOM05D005081 ORTHO05D005506 1.1e-27 127.9 244 41.4
Actinidia31880 Actinidia chinensis HOM05D005081 ORTHO05D005506 1.8e-27 127.1 223 42.2
ATR0626G171 Amborella trichopoda HOM05D005081 ORTHO05D005506 5.3e-27 125.6 251 41.0
CDE02G3184 Ceratophyllum demersum HOM05D005081 ORTHO05D005506 2.6e-26 123.2 243 39.9
HanXRQChr10g0303491 Helianthus annuus HOM05D005081 ORTHO05D005506 2.6e-26 123.2 232 40.1
Thhalv10003466m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 5.0e-25 119.0 251 40.2
Gohir.A05G408500 Gossypium hirsutum HOM05D005081 ORTHO05D005506 8.5e-25 118.2 243 39.9
Os02g0141500 Oryza sativa ssp. japonica HOM05D005081 ORTHO05D005506 1.1e-24 117.9 235 38.7
AL3G43930 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 1.4e-24 117.5 232 40.5
Gohir.D04G006900 Gossypium hirsutum HOM05D005081 ORTHO05D005506 5.5e-24 115.5 238 39.5
Gorai.012G008600 Gossypium raimondii HOM05D005081 ORTHO05D005506 5.5e-24 115.5 238 39.5
Cc10_g11560 Coffea canephora HOM05D005081 ORTHO05D005506 7.2e-24 115.2 200 41.0
A03p44750 Brassica napus HOM05D005081 ORTHO05D005506 2.7e-23 113.2 248 37.5
BraA03t13610Z Brassica rapa HOM05D005081 ORTHO05D005506 3.6e-23 112.8 248 37.5
Sp3g25120 Schrenkiella parvula HOM05D005081 ORTHO05D005506 3.6e-23 112.8 254 37.8
Duzib168G1013 Durio zibethinus HOM05D005081 ORTHO05D005506 8.7e-22 108.2 233 39.5
Lj4g0023825 Lotus japonicus HOM05D005081 ORTHO05D005506 2.5e-21 106.7 250 36.8
ECA234G2314 Erigeron canadensis HOM05D005081 ORTHO05D005506 2.2e-20 103.6 235 37.0
Carub.0003s2733 Capsella rubella HOM05D005081 ORTHO05D005506 3.7e-20 102.8 238 36.1
Medtr8g101480 Medicago truncatula HOM05D005081 ORTHO05D005506 6.3e-20 102.1 241 37.8
Zm00001eb208100 Zea mays HOM05D005081 ORTHO05D005506 5.3e-19 99.0 233 36.1
Glyma.08G028300 Glycine max HOM05D005081 ORTHO05D005506 1.2e-18 97.8 244 36.1
HPP92_017106 Vanilla planifolia HOM05D005081 ORTHO05D005506 7.7e-18 95.1 226 34.5
HPP92_017096 Vanilla planifolia HOM05D005081 ORTHO05D005506 1.7e-17 94.0 226 34.1
DCAR_019825 Daucus carota HOM05D005081 ORTHO05D005506 2.9e-17 93.2 255 36.5
Lalb_Chr05g0223691 Lupinus albus HOM05D005081 ORTHO05D005506 1.9e-16 90.5 246 34.6
Ca_17410_v3 Cicer arietinum L. HOM05D005081 ORTHO05D005506 2.1e-15 87.0 243 35.0
BcaB08g34509 Brassica carinata HOM05D005081 ORTHO05D005506 2.7e-15 86.7 249 33.3
VMungo0251G2709 Vigna mungo HOM05D005081 ORTHO05D005506 2.7e-15 86.7 248 35.5
MD16G1241100 Malus domestica HOM05D005081 ORTHO05D005506 7.9e-15 85.1 96 53.1
arahy.Tifrunner.gnm1.ann1.FV9V0P Arachis hypogaea HOM05D005081 ORTHO05D005506 1.8e-14 84.0 189 37.6
arahy.Tifrunner.gnm1.ann1.TAK2NC Arachis hypogaea HOM05D005081 ORTHO05D005506 2.3e-14 83.6 175 38.3
BcaC01g03146 Brassica carinata HOM05D005081 ORTHO05D005506 3.0e-14 83.2 246 32.5
C03p55600 Brassica napus HOM05D005081 ORTHO05D005506 3.0e-14 83.2 246 32.5
BolC3t17837H Brassica oleracea HOM05D005081 ORTHO05D005506 3.0e-14 83.2 246 32.5
TPR.G25464 Trifolium pratense HOM05D005081 ORTHO05D005506 3.9e-14 82.8 251 33.5
CARHR103910 Cardamine hirsuta HOM05D005081 ORTHO05D005506 2.6e-13 80.1 115 47.0
Glyma.05G221800 Glycine max HOM05D005081 ORTHO05D005506 4.4e-13 79.3 251 31.9
Phvul.002G303500 Phaseolus vulgaris HOM05D005081 ORTHO05D005506 4.4e-13 79.3 248 33.9
Psat7g022000 Pisum sativum HOM05D005081 ORTHO05D005506 9.7e-13 78.2 150 38.0
MD15G1102900 Malus domestica HOM05D005081 ORTHO05D005506 1.7e-12 77.4 173 33.5
FvH4_2g36450 Fragaria vesca HOM05D026897 ORTHO05D005506 6.9e-11 72.0 279 28.0
Duzib168G0721 Durio zibethinus HOM05D005081 ORTHO05D005506 2.0e-10 70.5 240 28.3
FAN27G3206 Fragaria x ananassa HOM05D026897 ORTHO05D005506 7.7e-10 68.6 279 27.6
Prupe.1G455900 Prunus persica HOM05D005081 ORTHO05D005506 6.5e-09 65.5 212 32.5
MD08G1124200 Malus domestica HOM05D005081 ORTHO05D005506 8.5e-09 65.1 173 31.8
Peaxi162Scf00083g00112 Petunia axillaris HOM05D005081 ORTHO05D005506 9.4e-08 61.6 100 42.0
Peaxi162Scf00566g00025 Petunia axillaris HOM05D005081 ORTHO05D005506 1.2e-07 61.2 100 43.0
FAN15G2850 Fragaria x ananassa HOM05D026897 ORTHO05D005506 2.1e-07 60.5 212 29.7
Peaxi162Scf00460g00005 Petunia axillaris HOM05D005081 ORTHO05D005506 2.1e-07 60.5 132 37.1
Peaxi162Scf01260g00001 Petunia axillaris HOM05D005081 ORTHO05D005506 6.1e-07 58.9 100 40.0
Thhalv10009663m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 1.4e-06 57.8 125 40.8
FAN20G0355 Fragaria x ananassa HOM05D026897 ORTHO05D005506 3.9e-06 56.2 293 25.9
Peaxi162Scf00228g00099 Petunia axillaris HOM05D005081 ORTHO05D005506 3.9e-06 56.2 130 33.1
Lalb_Chr11g0064261 Lupinus albus HOM05D005081 ORTHO05D005506 5.2e-06 55.8 230 29.1
Peaxi162Scf00740g00003 Petunia axillaris HOM05D005081 ORTHO05D005506 5.2e-06 55.8 100 40.0


User provided reference genes

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