Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 5.4e-130 467.6 230 100.0
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 7.2e-66 254.6 240 60.0
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 3.7e-62 242.3 232 60.3
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 1.8e-61 240.0 226 60.2
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 3.9e-59 232.3 230 55.2
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 8.6e-59 231.1 232 58.2
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 5.6e-58 228.4 231 56.3
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 3.1e-56 222.6 233 55.4
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 1.2e-55 220.7 231 54.5
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 7.5e-55 218.0 230 53.5
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 7.5e-55 218.0 231 55.8
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.3e-54 217.2 231 54.1
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 2.2e-54 216.5 228 54.4
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 3.7e-54 215.7 236 52.5
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 8.3e-54 214.5 239 55.6
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 4.1e-53 212.2 229 54.6
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 1.2e-52 210.7 227 53.3
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 2.7e-52 209.5 225 54.2
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 6.0e-52 208.4 225 53.8
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 1.0e-51 207.6 232 53.4
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 1.7e-51 206.8 233 55.8
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 2.3e-51 206.5 241 56.4
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 2.3e-51 206.5 225 53.8
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.3e-51 206.5 233 54.5
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.3e-51 206.5 233 54.5
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 3.0e-51 206.1 225 53.8
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 1.1e-50 204.1 232 50.0
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 1.9e-50 203.4 225 53.8
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.5e-50 203.0 233 52.8
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 2.5e-50 203.0 231 51.5
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 5.6e-50 201.8 225 52.9
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 5.6e-50 201.8 226 52.2
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 9.5e-50 201.1 235 51.9
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 2.8e-49 199.5 198 56.1
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 3.6e-49 199.1 224 50.9
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 4.7e-49 198.7 227 52.9
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 4.7e-49 198.7 211 53.6
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 1.4e-48 197.2 240 49.6
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 1.5e-47 193.7 240 50.8
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 5.8e-47 191.8 234 51.3
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 9.8e-47 191.0 230 50.9
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.2e-46 189.9 234 50.9
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 2.9e-46 189.5 242 49.6
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 3.7e-46 189.1 230 49.6
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 6.4e-46 188.3 230 49.1
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 1.4e-45 187.2 230 49.1
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 1.4e-45 187.2 232 50.0
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 1.9e-45 186.8 165 64.8
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 2.4e-45 186.4 232 51.3
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 2.4e-45 186.4 225 48.9
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 4.1e-45 185.7 259 44.8
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 4.1e-45 185.7 234 49.1
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 7.0e-45 184.9 236 51.7
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.2e-44 184.1 234 50.4
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 2.7e-44 183.0 235 49.4
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 4.6e-44 182.2 231 46.8
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.6e-44 182.2 236 50.8
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.6e-44 182.2 236 51.3
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 7.8e-44 181.4 228 51.3
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.3e-43 180.6 233 49.4
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 1.7e-43 180.3 227 48.9
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 2.3e-43 179.9 237 50.2
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 2.3e-43 179.9 213 52.6
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 6.6e-43 178.3 233 50.2
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.1e-42 177.6 229 51.1
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 1.5e-42 177.2 236 49.2
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 3.3e-42 176.0 233 45.9
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 5.6e-42 175.3 219 48.9
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 3.6e-41 172.6 232 45.3
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 6.2e-41 171.8 230 48.7
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 8.1e-41 171.4 240 46.7
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 1.8e-40 170.2 225 45.3
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 1.8e-40 170.2 231 43.3
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 2.3e-40 169.9 231 43.3
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 3.1e-40 169.5 232 44.0
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 3.1e-40 169.5 230 48.3
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 5.2e-40 168.7 226 46.9
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 1.2e-39 167.5 232 46.1
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 1.5e-39 167.2 233 44.2
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 1.5e-39 167.2 234 45.3
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 2.0e-39 166.8 238 45.8
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 2.9e-38 162.9 207 52.2
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 3.7e-38 162.5 232 44.4
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 6.4e-38 161.8 234 41.9
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 6.4e-38 161.8 230 45.2
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 6.4e-38 161.8 247 43.3
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 8.3e-38 161.4 234 41.5
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 8.3e-38 161.4 211 48.3
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 1.1e-37 161.0 233 43.3
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 1.4e-37 160.6 232 41.8
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 1.4e-37 160.6 232 41.8
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 1.4e-37 160.6 248 45.6
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 1.9e-37 160.2 232 41.8
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 1.9e-37 160.2 232 41.8
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 1.9e-37 160.2 232 41.8
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 3.2e-37 159.5 230 41.3
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 3.2e-37 159.5 230 41.3
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 3.2e-37 159.5 230 41.3
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 7.1e-37 158.3 234 46.6
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 9.2e-37 157.9 230 40.9
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 1.2e-36 157.5 223 43.5
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 1.6e-36 157.1 233 42.5
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 2.7e-36 156.4 232 44.0
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 1.0e-35 154.5 232 44.4
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 1.3e-35 154.1 220 40.9
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 1.3e-35 154.1 235 43.0
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 1.3e-35 154.1 235 43.0
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 3.0e-35 152.9 214 43.9
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 3.9e-35 152.5 218 44.5
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 3.9e-35 152.5 245 41.6
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 6.6e-35 151.8 235 42.6
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 6.6e-35 151.8 235 42.6
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 6.6e-35 151.8 235 42.6
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 8.6e-35 151.4 229 42.4
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 9.5e-34 147.9 219 45.2
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 9.5e-34 147.9 219 45.2
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 9.5e-34 147.9 231 41.6
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 1.6e-33 147.1 229 42.4
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 4.7e-33 145.6 232 42.2
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 1.1e-32 144.4 236 41.9
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 1.8e-32 143.7 257 40.9
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 2.4e-32 143.3 221 42.5
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 1.2e-31 141.0 231 42.9
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 2.2e-30 136.7 250 39.6
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 4.2e-29 132.5 210 42.4
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 5.4e-29 132.1 224 40.6
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 7.1e-29 131.7 214 41.1
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 1.2e-28 131.0 213 42.7
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.2e-28 131.0 185 45.4
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.1e-28 130.2 185 44.9
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 4.6e-28 129.0 191 44.5
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 7.8e-28 128.3 167 49.1
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 6.6e-27 125.2 226 38.1
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 1.3e-25 120.9 220 36.8
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 2.8e-25 119.8 199 40.2
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 6.2e-25 118.6 196 39.8
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 8.1e-25 118.2 203 40.4
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.8e-24 117.1 229 38.0
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 9.0e-24 114.8 198 40.4
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 1.9e-21 107.1 134 50.7
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 2.4e-21 106.7 215 37.2
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 4.2e-21 105.9 117 55.6
Lj4C625T3 Lonicera japonica HOM05D004006 ORTHO05D004585 5.4e-21 105.5 94 57.4
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 7.1e-21 105.1 197 38.1
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 9.3e-21 104.8 250 33.6
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 1.6e-20 104.0 132 47.0
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 2.1e-20 103.6 233 34.3
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 2.7e-20 103.2 226 34.5
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.6e-20 102.4 135 47.4
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 1.0e-19 101.3 232 35.3
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.3e-19 100.9 185 38.4
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.1e-18 97.8 185 36.8
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 1.3e-17 94.4 229 32.3
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 2.1e-17 93.6 108 44.4
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 1.1e-16 91.3 111 44.1
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 1.4e-16 90.9 231 33.3
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 5.8e-15 85.5 203 34.5
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 5.8e-15 85.5 203 34.5
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 7.6e-15 85.1 269 31.6
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 2.2e-14 83.6 195 36.9
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 3.8e-14 82.8 203 34.0
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 3.8e-14 82.8 203 34.0
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 4.9e-14 82.4 203 33.5
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 1.4e-13 80.9 211 32.7
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 4.2e-13 79.3 162 35.8
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 3.0e-11 73.2 229 30.6
Ah.05g171110 Amaranthus hybridus HOM05D004006 ORTHO05D004585 4.3e-10 69.3 96 44.8
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 1.2e-07 61.2 101 39.6
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 3.4e-07 59.7 191 28.8
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 5.8e-07 58.9 206 29.6
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 2.9e-06 56.6 101 36.6


User provided reference genes

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