Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 3.3e-192 674.9 333 100.0
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 6.5e-124 448.0 315 70.8
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 9.0e-118 427.6 310 67.4
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 1.2e-117 427.2 296 69.9
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 1.5e-117 426.8 297 68.7
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 4.5e-117 425.2 311 65.6
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 4.5e-117 425.2 310 67.1
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 7.7e-117 424.5 254 78.3
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 2.9e-116 422.5 309 67.6
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 3.8e-116 422.2 267 74.9
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 1.1e-115 420.6 248 77.8
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 5.5e-115 418.3 246 78.0
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 7.2e-115 417.9 311 66.9
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 1.2e-114 417.2 252 77.0
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 2.7e-114 416.0 303 68.3
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 3.6e-114 415.6 254 76.4
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 3.6e-114 415.6 252 76.6
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 6.1e-114 414.8 314 65.9
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 1.0e-113 414.1 294 67.3
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 2.3e-113 412.9 324 63.9
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 6.7e-113 411.4 307 65.5
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 4.3e-112 408.7 312 64.1
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 4.3e-112 408.7 304 66.1
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 2.2e-111 406.4 307 66.8
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 3.7e-111 405.6 313 65.8
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 4.8e-111 405.2 283 67.1
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 8.2e-111 404.4 247 74.5
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 1.1e-110 404.1 232 80.2
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 1.1e-110 404.1 232 80.2
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 1.1e-110 404.1 312 63.8
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 1.8e-110 403.3 312 63.5
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 5.3e-110 401.7 251 74.1
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 6.9e-110 401.4 309 63.1
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 1.2e-109 400.6 334 61.1
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 1.3e-108 397.1 246 74.0
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 2.9e-108 396.0 248 75.4
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 3.8e-108 395.6 311 62.7
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 3.8e-108 395.6 311 62.7
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 5.0e-108 395.2 298 62.8
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 6.5e-108 394.8 310 61.9
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 1.4e-107 393.7 317 60.3
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 2.5e-107 392.9 249 71.9
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 2.5e-107 392.9 252 73.4
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 3.2e-107 392.5 309 63.1
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 4.2e-107 392.1 308 63.0
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 9.4e-107 391.0 305 62.3
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 9.4e-107 391.0 309 63.1
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 1.2e-106 390.6 249 72.3
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 2.7e-106 389.4 314 64.6
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 3.6e-106 389.0 336 59.8
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 4.7e-106 388.7 261 70.1
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 6.1e-106 388.3 267 67.4
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 6.1e-106 388.3 255 72.9
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 6.1e-106 388.3 255 72.9
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 1.0e-105 387.5 287 68.3
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 1.8e-105 386.7 249 71.5
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 5.1e-105 385.2 254 70.9
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 5.1e-105 385.2 243 72.0
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 6.7e-105 384.8 303 63.0
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 8.8e-105 384.4 304 62.2
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 1.5e-104 383.6 246 71.1
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 2.0e-104 383.3 305 62.6
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 2.0e-104 383.3 249 71.1
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 2.6e-104 382.9 316 60.1
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 2.6e-104 382.9 275 68.0
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 9.7e-104 380.9 313 61.3
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 4.8e-103 378.6 254 68.1
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 6.3e-103 378.3 311 60.5
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 1.1e-102 377.5 253 68.8
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 1.4e-102 377.1 232 73.3
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 4.1e-102 375.6 309 62.5
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 2.0e-101 373.2 282 66.3
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 3.8e-100 369.0 279 64.5
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 1.4e-99 367.1 230 75.2
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 5.5e-99 365.2 270 65.2
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 1.6e-98 363.6 254 66.5
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 2.1e-98 363.2 250 67.2
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 3.6e-98 362.5 254 66.5
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 3.6e-98 362.5 313 56.9
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 1.8e-97 360.1 248 67.7
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 1.8e-97 360.1 250 68.0
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 6.7e-97 358.2 232 69.8
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 1.3e-95 354.0 247 66.8
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 4.8e-95 352.1 254 69.3
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 9.1e-94 347.8 247 64.8
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 2.6e-93 346.3 210 76.7
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 2.2e-92 343.2 210 76.2
Sed0010412 Sechium edule HOM05D006249 ORTHO05D007643 2.2e-92 343.2 212 74.1
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 8.3e-87 324.7 246 62.6
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 1.0e-81 307.8 269 58.7
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 1.8e-78 297.0 270 57.0
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 2.4e-78 296.6 248 58.9
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 4.7e-74 282.3 261 56.3
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 1.0e-73 281.2 309 50.5
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 1.4e-73 280.8 231 58.4
Medtr4g076080 Medicago truncatula HOM05D006249 ORTHO05D007643 1.7e-71 273.9 237 56.5
Phvul.001G156700 Phaseolus vulgaris HOM05D006249 ORTHO05D007643 1.4e-70 270.8 194 64.4
AagrBONN_evm.TU.Sc2ySwM_228.3891 Anthoceros agrestis HOM05D006249 ORTHO05D007643 3.3e-67 259.6 206 62.1
unitig_0.g1129 Utricularia gibba HOM05D006249 ORTHO05D007643 9.5e-67 258.1 183 63.9
SEGI_12640 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 3.6e-66 256.1 172 68.0
EL10Ac5g10475 Beta vulgaris HOM05D006249 ORTHO05D007643 1.5e-64 250.8 151 73.5
RcHm_v2.0_Chr4g0397901 Rosa chinensis HOM05D006249 ORTHO05D007643 6.4e-63 245.4 177 66.7
SMO358G0282 Selaginella moellendorffii HOM05D000331 ORTHO05D002018 6.0e-53 212.2 173 59.0
Cre02.g101000 Chlamydomonas reinhardtii HOM05D006249 ORTHO05D007643 2.6e-48 196.8 278 41.4
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 1.3e-44 184.5 245 42.0
CBR_g19145 Chara braunii HOM05D006249 ORTHO05D007643 4.4e-40 169.5 157 54.1
Oeu018171.1 Olea europaea HOM05D006249 ORTHO05D007643 4.2e-38 162.9 168 56.5
arahy.Tifrunner.gnm1.ann1.U7WVQR Arachis hypogaea HOM05D006249 ORTHO05D007643 1.2e-37 161.4 203 43.3
Sp1g02020 Schrenkiella parvula HOM05D006249 ORTHO05D007643 6.0e-37 159.1 191 48.7
Medtr8g064430 Medicago truncatula HOM05D006249 ORTHO05D007643 2.1e-34 150.6 123 60.2
Glyma.03G158766 Glycine max HOM05D006249 ORTHO05D007643 4.9e-31 139.4 94 71.3
Hund30725 Selenicereus undatus HOM05D006249 ORTHO05D007643 1.2e-29 134.8 99 65.7
Ca_15970_v3 Cicer arietinum L. HOM05D006249 ORTHO05D007643 6.0e-29 132.5 106 55.7
Hund30696 Selenicereus undatus HOM05D006249 ORTHO05D007643 7.3e-27 125.6 98 62.2
Cfa022768 Carpinus fangiana HOM05D006249 ORTHO05D007643 2.6e-24 117.1 150 40.7
arahy.Tifrunner.gnm1.ann1.FBQK8B Arachis hypogaea HOM05D006249 ORTHO05D007643 1.7e-23 114.4 125 46.4
arahy.Tifrunner.gnm1.ann1.AHQ53Z Arachis hypogaea HOM05D006249 ORTHO05D007643 4.9e-23 112.8 119 48.7
PRCOL_00003971 Prasinoderma coloniale HOM05D006249 ORTHO05D007643 4.9e-23 112.8 160 38.8
Glyma.03G158832 Glycine max HOM05D006249 ORTHO05D007643 1.0e-20 105.1 63 76.2
CSS0005124 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 2.5e-19 100.5 57 82.5
SHI29847 Sapria himalayana HOM05D006249 ORTHO05D007643 2.5e-19 100.5 139 41.0
SHI34902 Sapria himalayana HOM05D006249 ORTHO05D007643 1.1e-17 95.1 141 39.7
SHI29011 Sapria himalayana HOM05D006249 ORTHO05D007643 5.3e-17 92.8 202 32.2
SHI16544 Sapria himalayana HOM05D006249 ORTHO05D007643 3.9e-12 76.6 116 38.8
SHI36883 Sapria himalayana HOM05D006249 ORTHO05D007643 4.3e-11 73.2 56 55.4
SHI34501 Sapria himalayana HOM05D006249 ORTHO05D007643 8.2e-10 68.9 95 42.1
SHI36882 Sapria himalayana HOM05D006249 ORTHO05D007643 8.2e-10 68.9 116 36.2
SHI54291 Sapria himalayana HOM05D006249 ORTHO05D007643 8.2e-10 68.9 159 34.6
SHI04506 Sapria himalayana HOM05D006249 ORTHO05D007643 1.8e-09 67.8 120 33.3
SHI31647 Sapria himalayana HOM05D006249 ORTHO05D007643 5.3e-09 66.2 76 46.1
SHI27267 Sapria himalayana HOM05D000624 ORTHO05D000495 2.0e-08 64.3 65 49.2
SHI49503 Sapria himalayana HOM05D000624 ORTHO05D000495 5.8e-08 62.8 50 64.0
SEGI_29111 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 2.9e-07 60.5 41 61.0
SHI43714 Sapria himalayana HOM05D000624 ORTHO05D007643 6.5e-07 59.3 49 59.2
SHI49364 Sapria himalayana HOM05D000624 ORTHO05D000495 6.5e-07 59.3 50 60.0
SHI41947 Sapria himalayana HOM05D000624 ORTHO05D000495 1.4e-06 58.2 50 60.0
SHI45616 Sapria himalayana HOM05D000624 ORTHO05D000495 1.9e-06 57.8 50 60.0


User provided reference genes

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