Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2437 Punica granatum HOM05D000840 ORTHO05D000670 3.0e-38 161.4 82 100.0
PGR044G1495 Punica granatum HOM05D000840 ORTHO05D000670 2.5e-16 88.6 79 60.8
PGR044G2158 Punica granatum HOM05D000840 ORTHO05D000670 1.2e-15 86.3 79 59.5
PGR044G0790 Punica granatum HOM05D000840 ORTHO05D000007 4.6e-15 84.3 79 58.2
PGR044G1453 Punica granatum HOM05D000840 ORTHO05D000007 1.0e-14 83.2 79 58.2
MD03G1032700 Malus domestica HOM05D000840 ORTHO05D000670 8.7e-14 80.1 77 57.1
MD03G1032800 Malus domestica HOM05D000840 ORTHO05D000670 7.4e-13 77.0 77 55.8
MD11G1036600 Malus domestica HOM05D000840 ORTHO05D000670 1.6e-12 75.9 77 55.8
MD03G1033200 Malus domestica HOM05D000840 ORTHO05D000670 2.1e-12 75.5 77 54.5
MD03G1033600 Malus domestica HOM05D000840 ORTHO05D000670 2.1e-12 75.5 77 54.5
vmacro12684 Vaccinium macrocarpon HOM05D000840 ORTHO05D000670 2.8e-12 75.1 74 54.1
MD03G1033800 Malus domestica HOM05D000840 ORTHO05D000670 4.8e-12 74.3 77 54.5
Prupe.6G027500 Prunus persica HOM05D000840 ORTHO05D000670 4.8e-12 74.3 73 56.2
FAN16G1995 Fragaria x ananassa HOM05D000840 ORTHO05D000670 1.1e-11 73.2 73 56.2
FAN21G2894 Fragaria x ananassa HOM05D000840 ORTHO05D000670 1.1e-11 73.2 73 56.2
FAN25G1451 Fragaria x ananassa HOM05D000840 ORTHO05D000670 1.1e-11 73.2 73 56.2
FvH4_3g42370 Fragaria vesca HOM05D000840 ORTHO05D000670 1.4e-11 72.8 73 54.8
FAN11G2882 Fragaria x ananassa HOM05D000840 ORTHO05D000670 1.4e-11 72.8 73 54.8
FAN28G2945 Fragaria x ananassa HOM05D000840 ORTHO05D000670 1.4e-11 72.8 73 54.8
Dinv31992 Davidia involucrata HOM05D000840 ORTHO05D000670 1.8e-11 72.4 80 52.5
QL05p033046 Quercus lobata HOM05D000840 ORTHO05D000670 1.8e-11 72.4 73 53.4
CANSAT56G3623 Cannabis sativa HOM05D000840 ORTHO05D000670 3.1e-11 71.6 73 53.4
Manes.11G061900 Manihot esculenta HOM05D000840 ORTHO05D000670 4.0e-11 71.2 73 53.4
TWI12G0605 Tripterygium wilfordii HOM05D000840 ORTHO05D000670 4.0e-11 71.2 73 52.1
Glyma.07G027800 Glycine max HOM05D000840 ORTHO05D000670 5.3e-11 70.9 81 48.1
MD03G1034600 Malus domestica HOM05D000840 ORTHO05D000670 6.9e-11 70.5 77 53.2
Actinidia01692 Actinidia chinensis HOM05D000840 ORTHO05D000670 9.0e-11 70.1 73 53.4
Ciclev10024717m.g Citrus clementina HOM05D000840 ORTHO05D000670 9.0e-11 70.1 85 48.2
Glyma.15G005500 Glycine max HOM05D000840 ORTHO05D000670 9.0e-11 70.1 73 52.1
Manes.04G107400 Manihot esculenta HOM05D000840 ORTHO05D000670 9.0e-11 70.1 73 52.1
RcHm_v2.0_Chr5g0075871 Rosa chinensis HOM05D000840 ORTHO05D000670 1.2e-10 69.7 73 52.1
TPR.G37212 Trifolium pratense HOM05D000840 ORTHO05D000670 1.2e-10 69.7 73 52.1
VMungo1080G0802 Vigna mungo HOM05D000840 ORTHO05D000670 1.2e-10 69.7 73 52.1
Medtr2g104430 Medicago truncatula HOM05D000840 ORTHO05D000670 1.5e-10 69.3 73 52.1
Actinidia01522 Actinidia chinensis HOM05D000840 ORTHO05D000670 2.0e-10 68.9 73 52.1
Cfa001928 Carpinus fangiana HOM05D000840 ORTHO05D000670 2.0e-10 68.9 73 52.1
Haze_16616 Corylus avellana HOM05D000840 ORTHO05D000670 2.0e-10 68.9 73 50.7
QL05p032987 Quercus lobata HOM05D000840 ORTHO05D000670 2.0e-10 68.9 73 53.4
Glyma.13G367700 Glycine max HOM05D000840 ORTHO05D000670 2.6e-10 68.6 73 50.7
RcHm_v2.0_Chr5g0075821 Rosa chinensis HOM05D000840 ORTHO05D000670 2.6e-10 68.6 73 46.6
CSS0003676 Camellia sinensis var. sinensis HOM05D000840 ORTHO05D000670 3.4e-10 68.2 73 53.4
HanXRQChr13g0410001 Helianthus annuus HOM05D000840 ORTHO05D000670 4.5e-10 67.8 73 50.7
Medtr2g104400 Medicago truncatula HOM05D000840 ORTHO05D000670 4.5e-10 67.8 73 50.7
Lj3g0027916 Lotus japonicus HOM05D000840 ORTHO05D000670 5.8e-10 67.4 73 50.7
Thecc.06G034100 Theobroma cacao HOM05D000840 ORTHO05D000670 5.8e-10 67.4 73 50.7
CANSAT56G1456 Cannabis sativa HOM05D000840 ORTHO05D000670 1.0e-09 66.6 74 51.4
Sabra03G0016100 Salix brachista HOM05D000840 ORTHO05D000670 1.0e-09 66.6 73 50.7
Dinv31533 Davidia involucrata HOM05D000840 ORTHO05D000670 1.3e-09 66.2 81 48.1
Lju1220C1T6 Lonicera japonica HOM05D000840 ORTHO05D000670 1.3e-09 66.2 73 49.3
Medtr2g104450 Medicago truncatula HOM05D000840 ORTHO05D000670 1.3e-09 66.2 73 47.9
Potri.003G012400 Populus trichocarpa HOM05D000840 ORTHO05D000670 1.3e-09 66.2 73 50.7
Duzib235G1450 Durio zibethinus HOM05D000840 ORTHO05D000670 1.7e-09 65.9 73 49.3
Glyma.08G214900 Glycine max HOM05D000840 ORTHO05D000670 1.7e-09 65.9 82 46.3
PSO210G6664 Papaver somniferum HOM05D000840 ORTHO05D000670 1.7e-09 65.9 74 48.6
Psat5g304200 Pisum sativum HOM05D000840 ORTHO05D000670 1.7e-09 65.9 73 53.4
Cpa.g.sc14.207 Carica papaya HOM05D000840 ORTHO05D000670 2.2e-09 65.5 73 46.6
Duzib235G0104 Durio zibethinus HOM05D000840 ORTHO05D000670 2.2e-09 65.5 73 50.7
Lalb_Chr24g0395381 Lupinus albus HOM05D000840 ORTHO05D000670 2.2e-09 65.5 73 46.6
Thecc.06G034400 Theobroma cacao HOM05D000840 ORTHO05D000670 2.2e-09 65.5 73 49.3
vmacro21084 Vaccinium macrocarpon HOM05D000840 ORTHO05D000670 2.2e-09 65.5 73 50.7
Lj7C492G1 Lonicera japonica HOM05D000840 ORTHO05D000670 2.9e-09 65.1 73 49.3
TWI75G0929 Tripterygium wilfordii HOM05D000840 ORTHO05D000670 2.9e-09 65.1 73 46.6
GSVIVG01027201001 Vitis vinifera HOM05D000840 ORTHO05D000670 2.9e-09 65.1 73 47.9
Gohir.A05G121700 Gossypium hirsutum HOM05D000840 ORTHO05D000670 3.8e-09 64.7 73 47.9
Sed0011014 Sechium edule HOM05D000840 ORTHO05D000670 3.8e-09 64.7 73 52.1
Gorai.011G085600 Gossypium raimondii HOM05D000840 ORTHO05D000670 5.0e-09 64.3 84 45.2
HanXRQChr03g0080491 Helianthus annuus HOM05D000840 ORTHO05D000670 5.0e-09 64.3 73 49.3
Sabra03G0015900 Salix brachista HOM05D000840 ORTHO05D000670 5.0e-09 64.3 73 49.3
Zm00001eb175670 Zea mays HOM05D000840 ORTHO05D000670 5.0e-09 64.3 73 43.8
Haze_16613 Corylus avellana HOM05D000840 ORTHO05D000670 6.5e-09 63.9 73 49.3
CsaV3_7G006140 Cucumis sativus L. HOM05D000840 ORTHO05D000670 6.5e-09 63.9 78 47.4
Eucgr.J00087 Eucalyptus grandis HOM05D000840 ORTHO05D000670 6.5e-09 63.9 77 48.1
Lalb_Chr04g0262271 Lupinus albus HOM05D000840 ORTHO05D000670 6.5e-09 63.9 73 43.8
QL05p033135 Quercus lobata HOM05D000840 ORTHO05D000670 6.5e-09 63.9 66 53.0
TPR.G19143 Trifolium pratense HOM05D000840 ORTHO05D000670 6.5e-09 63.9 73 47.9
VMungo0331G0091 Vigna mungo HOM05D000840 ORTHO05D000670 6.5e-09 63.9 73 43.8
PSO210G5383 Papaver somniferum HOM05D000840 ORTHO05D000670 8.4e-09 63.5 73 45.2
RcHm_v2.0_Chr5g0075851 Rosa chinensis HOM05D000840 ORTHO05D000670 8.4e-09 63.5 73 47.9
SHI11281 Sapria himalayana HOM05D000840 ORTHO05D000670 8.4e-09 63.5 73 45.2
Aa31LG4G800 Aethionema arabicum HOM05D000840 ORTHO05D000670 1.1e-08 63.2 73 43.8
BcaB03g14522 Brassica carinata HOM05D000840 ORTHO05D000670 1.1e-08 63.2 65 47.7
TWI75G1741 Tripterygium wilfordii HOM05D000840 ORTHO05D000670 1.1e-08 63.2 73 47.9
CiPaw.01G251200 Carya illinoinensis HOM05D000840 ORTHO05D000670 1.4e-08 62.8 73 50.7
Gohir.D10G078800 Gossypium hirsutum HOM05D000840 ORTHO05D000670 1.4e-08 62.8 84 45.2
RcHm_v2.0_Chr5g0075841 Rosa chinensis HOM05D000840 ORTHO05D000670 1.4e-08 62.8 73 49.3
TPR.G20703 Trifolium pratense HOM05D000840 ORTHO05D000670 1.4e-08 62.8 73 49.3
Atru.chr4.1644_Atru.chr4.1657 Acer truncatum HOM05D000840 ORTHO05D000670 1.9e-08 62.4 73 45.2
Lj3g0024586 Lotus japonicus HOM05D000840 ORTHO05D000670 1.9e-08 62.4 73 47.9
Potri.003G013000 Populus trichocarpa HOM05D000840 ORTHO05D000670 1.9e-08 62.4 73 47.9
QL05p032549 Quercus lobata HOM05D000840 ORTHO05D000670 1.9e-08 62.4 72 45.8
Rhsim01G0123000 Rhododendron simsii HOM05D000840 ORTHO05D000670 1.9e-08 62.4 62 50.0
AT1G15780 Arabidopsis thaliana HOM05D000840 ORTHO05D000670 2.5e-08 62.0 73 45.2
arahy.Tifrunner.gnm1.ann1.8F3D8E Arachis hypogaea HOM05D000840 ORTHO05D000670 2.5e-08 62.0 79 44.3
arahy.Tifrunner.gnm1.ann1.E5CV98 Arachis hypogaea HOM05D000840 ORTHO05D000670 2.5e-08 62.0 79 44.3
Cfa001923 Carpinus fangiana HOM05D000840 ORTHO05D000670 2.5e-08 62.0 70 50.0
Gorai.009G126200 Gossypium raimondii HOM05D000840 ORTHO05D000670 2.5e-08 62.0 73 46.6
HanXRQChr03g0080551 Helianthus annuus HOM05D000840 ORTHO05D000670 2.5e-08 62.0 73 47.9
Os08g0564800 Oryza sativa ssp. japonica HOM05D000840 ORTHO05D000670 2.5e-08 62.0 79 40.5
Prupe.6G027600 Prunus persica HOM05D000840 ORTHO05D000670 2.5e-08 62.0 71 50.7
Ah.10g029760 Amaranthus hybridus HOM05D000840 ORTHO05D000670 3.2e-08 61.6 76 42.1
Eucgr.J00090 Eucalyptus grandis HOM05D000840 ORTHO05D000670 3.2e-08 61.6 73 45.2
Gohir.A10G072300 Gossypium hirsutum HOM05D000840 ORTHO05D000670 3.2e-08 61.6 84 45.2
A08p31500 Brassica napus HOM05D000840 ORTHO05D000670 4.2e-08 61.2 73 43.8
C08p17290 Brassica napus HOM05D000840 ORTHO05D000670 4.2e-08 61.2 73 43.8
BolC8t49355H Brassica oleracea HOM05D000840 ORTHO05D000670 4.2e-08 61.2 73 43.8
BraA08t35072Z Brassica rapa HOM05D000840 ORTHO05D000670 4.2e-08 61.2 73 43.8
PSO210G3299 Papaver somniferum HOM05D000840 ORTHO05D000670 4.2e-08 61.2 72 47.2
Phvul.005G180200 Phaseolus vulgaris HOM05D000840 ORTHO05D000670 4.2e-08 61.2 73 46.6
Rhsim01G0122800 Rhododendron simsii HOM05D000840 ORTHO05D000670 4.2e-08 61.2 62 48.4
TAR633G0986 Trochodendron aralioides HOM05D000840 ORTHO05D000670 4.2e-08 61.2 73 45.2
A09p61210 Brassica napus HOM05D000840 ORTHO05D000670 5.5e-08 60.8 73 43.8
C08p44780 Brassica napus HOM05D000840 ORTHO05D000670 5.5e-08 60.8 73 43.8
BolC8t52024H Brassica oleracea HOM05D000840 ORTHO05D000670 5.5e-08 60.8 73 43.8
BraA09t41494Z Brassica rapa HOM05D000840 ORTHO05D000670 5.5e-08 60.8 73 43.8
Thhalv10006572m.g Eutrema salsugineum HOM05D000840 ORTHO05D000670 5.5e-08 60.8 73 43.8
PSO384G2259 Papaver somniferum HOM05D000840 ORTHO05D000670 5.5e-08 60.8 73 42.5
BcaC07g38794 Brassica carinata HOM05D000840 ORTHO05D000670 7.1e-08 60.5 73 43.8
CiPaw.02G159400 Carya illinoinensis HOM05D000840 ORTHO05D000670 7.1e-08 60.5 73 49.3
Ca_01040_v3 Cicer arietinum L. HOM05D000840 ORTHO05D000670 7.1e-08 60.5 72 43.1
MELO3C018679.2 Cucumis melo HOM05D000840 ORTHO05D000670 7.1e-08 60.5 78 46.2
DCAR_003830 Daucus carota HOM05D000840 ORTHO05D000670 7.1e-08 60.5 78 46.2
ECA240G2103 Erigeron canadensis HOM05D000840 ORTHO05D000670 7.1e-08 60.5 73 47.9
Lalb_Chr01g0012231 Lupinus albus HOM05D000840 ORTHO05D000670 7.1e-08 60.5 73 42.5
AL1G27930 Arabidopsis lyrata HOM05D000840 ORTHO05D000670 9.3e-08 60.1 73 43.8
Lalb_Chr25g0279141 Lupinus albus HOM05D000840 ORTHO05D000670 9.3e-08 60.1 73 42.5
Carub.0001s1558 Capsella rubella HOM05D000840 ORTHO05D000670 1.2e-07 59.7 73 42.5
PSO339G3445 Papaver somniferum HOM05D000840 ORTHO05D000670 1.2e-07 59.7 73 41.1
BcaC07g41481 Brassica carinata HOM05D000840 ORTHO05D000670 1.6e-07 59.3 65 44.6
CARHR016270 Cardamine hirsuta HOM05D000840 ORTHO05D000670 1.6e-07 59.3 73 42.5
CiPaw.02G159300 Carya illinoinensis HOM05D000840 ORTHO05D000670 1.6e-07 59.3 73 49.3
Sp1g14070 Schrenkiella parvula HOM05D000840 ORTHO05D000670 1.6e-07 59.3 73 43.8
Potri.003G028089 Populus trichocarpa HOM05D000840 ORTHO05D000670 2.1e-07 58.9 73 45.2
TAR633G2034 Trochodendron aralioides HOM05D000840 ORTHO05D000670 2.7e-07 58.5 73 43.8
EL10Ac2g02702 Beta vulgaris HOM05D000840 ORTHO05D000670 3.5e-07 58.2 76 43.4
AUR62032561 Chenopodium quinoa HOM05D000840 ORTHO05D000670 3.5e-07 58.2 76 42.1
Ca_20456_v3 Cicer arietinum L. HOM05D000840 ORTHO05D000670 3.5e-07 58.2 76 46.1
COL.COLO4_11847 Corchorus olitorius HOM05D000840 ORTHO05D000670 3.5e-07 58.2 73 42.5
Gohir.A05G121650 Gossypium hirsutum HOM05D000840 ORTHO05D000670 3.5e-07 58.2 70 47.1
Gohir.D05G122700 Gossypium hirsutum HOM05D000840 ORTHO05D000670 3.5e-07 58.2 73 45.2
MD02G1272400 Malus domestica HOM05D000840 ORTHO05D000670 3.5e-07 58.2 73 45.2
PSO210G0831 Papaver somniferum HOM05D000840 ORTHO05D000670 3.5e-07 58.2 74 44.6
ClCG09G013510 Citrullus lanatus HOM05D000840 ORTHO05D000670 4.6e-07 57.8 74 47.3
FAN16G3492 Fragaria x ananassa HOM05D000840 ORTHO05D000670 4.6e-07 57.8 73 45.2
Rhsim01G0143500 Rhododendron simsii HOM05D000840 ORTHO05D000670 4.6e-07 57.8 62 45.2
FvH4_3g42361 Fragaria vesca HOM05D000840 ORTHO05D000670 6.1e-07 57.4 73 45.2
Medtr4g009740 Medicago truncatula HOM05D000840 ORTHO05D000670 6.1e-07 57.4 73 43.8
PSO210G4621 Papaver somniferum HOM05D000840 ORTHO05D000670 6.1e-07 57.4 80 43.8
THA.LOC104808194 Tarenaya hassleriana HOM05D000840 ORTHO05D000670 6.1e-07 57.4 76 39.5
Lsat_1_v5_gn_5_51740 Lactuca sativa HOM05D000840 ORTHO05D000670 7.9e-07 57.0 73 46.6
AL1G27910 Arabidopsis lyrata HOM05D000840 ORTHO05D000670 1.0e-06 56.6 70 41.4
CDE04G1049 Ceratophyllum demersum HOM05D000840 ORTHO05D000670 1.3e-06 56.2 82 42.7
HanXRQChr03g0080511 Helianthus annuus HOM05D000840 ORTHO05D000670 1.3e-06 56.2 76 39.5
Prupe.6G027900 Prunus persica HOM05D000840 ORTHO05D000670 1.3e-06 56.2 61 47.5
Rhsim01G0072100 Rhododendron simsii HOM05D000840 ORTHO05D000670 1.3e-06 56.2 58 48.3
ClCG09G013490 Citrullus lanatus HOM05D000840 ORTHO05D000670 1.8e-06 55.8 73 45.2
Gohir.A05G121600 Gossypium hirsutum HOM05D000840 ORTHO05D000670 1.8e-06 55.8 76 44.7
MBI04_g25415_MAGBIO Magnolia biondii HOM05D000840 ORTHO05D000670 1.8e-06 55.8 73 43.8
A06p11780 Brassica napus HOM05D000840 ORTHO05D000670 2.3e-06 55.5 73 41.1
C05p14010 Brassica napus HOM05D000840 ORTHO05D000670 2.3e-06 55.5 73 41.1
BolC5t30133H Brassica oleracea HOM05D000840 ORTHO05D000670 2.3e-06 55.5 73 41.1
Eucgr.E03533 Eucalyptus grandis HOM05D000840 ORTHO05D000670 2.3e-06 55.5 73 42.5
FvH4_3g37510 Fragaria vesca HOM05D000840 ORTHO05D000670 2.3e-06 55.5 74 44.6
FAN11G0386 Fragaria x ananassa HOM05D000840 ORTHO05D000670 2.3e-06 55.5 74 44.6
Gohir.D05G122600 Gossypium hirsutum HOM05D000840 ORTHO05D000670 2.3e-06 55.5 73 43.8
Gorai.009G126100 Gossypium raimondii HOM05D000840 ORTHO05D000670 2.3e-06 55.5 73 43.8
Glyma.06G086700 Glycine max HOM05D000840 ORTHO05D000670 3.0e-06 55.1 73 47.9
TPR.G38700 Trifolium pratense HOM05D000840 ORTHO05D000670 3.0e-06 55.1 76 38.2
Nitab4.5_0004104g0090 Nicotiana tabacum HOM05D000840 ORTHO05D000670 3.9e-06 54.7 73 42.5
Phvul.010G157900 Phaseolus vulgaris HOM05D000840 ORTHO05D000670 3.9e-06 54.7 71 43.7
Lsat_1_v5_gn_5_51780 Lactuca sativa HOM05D000840 ORTHO05D000670 5.1e-06 54.3 72 45.8
Cpa.g.sc10.131 Carica papaya HOM05D000840 ORTHO05D000670 6.7e-06 53.9 73 38.4
Psat7g257920 Pisum sativum HOM05D000840 ORTHO05D000670 6.7e-06 53.9 73 42.5
CAN.G186.26 Capsicum annuum HOM05D000840 ORTHO05D000670 8.7e-06 53.5 73 43.8
PSO210G7081 Papaver somniferum HOM05D000840 ORTHO05D000670 8.7e-06 53.5 74 40.5
Sopen04g004660 Solanum pennellii HOM05D000840 ORTHO05D000670 8.7e-06 53.5 73 42.5


User provided reference genes

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