Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2411 Punica granatum HOM05D005355 ORTHO05D006591 6.9e-231 803.9 497 100.0
Eucgr.F04357 Eucalyptus grandis HOM05D005355 ORTHO05D006591 1.2e-129 467.6 441 64.9
GSVIVG01008886001 Vitis vinifera HOM05D005355 ORTHO05D006591 2.6e-121 439.9 461 56.6
Potri.002G085000 Populus trichocarpa HOM05D005355 ORTHO05D006591 3.9e-117 426.0 459 61.0
Manes.18G076200 Manihot esculenta HOM05D005355 ORTHO05D006591 1.1e-116 424.5 451 61.6
CSS0023513 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 4.3e-116 422.5 454 56.8
VMungo1309G2754 Vigna mungo HOM05D005355 ORTHO05D006591 7.7e-113 411.8 437 59.3
Thecc.08G123400 Theobroma cacao HOM05D005355 ORTHO05D006591 1.3e-112 411.0 476 58.2
Sabra02G0066400 Salix brachista HOM05D005355 ORTHO05D006591 6.5e-112 408.7 486 57.6
CSS0006134 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 1.1e-111 407.9 454 55.7
Duzib093G2154 Durio zibethinus HOM05D005355 ORTHO05D006591 5.5e-111 405.6 456 59.0
CiPaw.05G223300 Carya illinoinensis HOM05D005355 ORTHO05D006591 3.6e-110 402.9 461 59.2
Prupe.1G500200 Prunus persica HOM05D005355 ORTHO05D006591 2.8e-107 393.3 441 60.1
Ciclev10000938m.g Citrus clementina HOM05D005355 ORTHO05D006591 4.1e-106 389.4 458 53.9
MD15G1351600 Malus domestica HOM05D005355 ORTHO05D006591 5.3e-106 389.0 488 51.8
Glyma.04G250500 Glycine max HOM05D005355 ORTHO05D006591 3.4e-105 386.3 429 60.1
CiPaw.06G029200 Carya illinoinensis HOM05D005355 ORTHO05D006591 2.9e-104 383.3 447 57.3
Glyma.06G112300 Glycine max HOM05D005355 ORTHO05D006591 3.2e-103 379.8 427 60.2
Gorai.010G049600 Gossypium raimondii HOM05D005355 ORTHO05D006591 5.5e-103 379.0 460 57.0
Gohir.A06G043600 Gossypium hirsutum HOM05D005355 ORTHO05D006591 2.7e-102 376.7 470 56.2
Phvul.009G124200 Phaseolus vulgaris HOM05D005355 ORTHO05D006591 1.4e-101 374.4 446 53.8
CsaV3_2G014020 Cucumis sativus L. HOM05D005355 ORTHO05D006591 1.1e-100 371.3 466 53.6
QL09p035410 Quercus lobata HOM05D005355 ORTHO05D006591 1.3e-99 367.9 480 54.6
MD00G1157400 Malus domestica HOM05D005355 ORTHO05D006591 1.7e-99 367.5 504 52.8
Gohir.D06G044400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 2.4e-98 363.6 460 55.9
Gorai.009G245100 Gossypium raimondii HOM05D005355 ORTHO05D006591 9.1e-98 361.7 447 57.3
Duzib116G0422 Durio zibethinus HOM05D005355 ORTHO05D006591 1.2e-97 361.3 463 54.6
TAR625G0673 Trochodendron aralioides HOM05D005355 ORTHO05D006591 1.2e-97 361.3 433 54.5
Sabra05G0133000 Salix brachista HOM05D005355 ORTHO05D006591 5.9e-97 359.0 554 46.8
TWI56G0611 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 1.0e-96 358.2 416 60.1
Nn5g28219 Nelumbo nucifera HOM05D005355 ORTHO05D006591 3.8e-96 356.3 462 50.0
Ca_15194_v3 Cicer arietinum L. HOM05D005355 ORTHO05D006591 5.0e-96 355.9 448 54.2
CANSAT25G1794 Cannabis sativa HOM05D005355 ORTHO05D006591 1.9e-95 354.0 467 49.0
Dinv27329 Davidia involucrata HOM05D005355 ORTHO05D006591 1.2e-94 351.3 429 53.8
Lj1g0013612 Lotus japonicus HOM05D005355 ORTHO05D006591 1.2e-94 351.3 462 53.9
Medtr3g072480 Medicago truncatula HOM05D005355 ORTHO05D006591 3.6e-94 349.7 450 53.1
Potri.005G176400 Populus trichocarpa HOM05D005355 ORTHO05D006591 4.7e-94 349.4 536 48.9
TWI12G0790 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 1.0e-93 348.2 414 54.1
PSO170G1761 Papaver somniferum HOM05D005355 ORTHO05D006591 4.8e-91 339.3 438 49.8
FAN27G0453 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.8e-90 337.4 432 53.2
arahy.Tifrunner.gnm1.ann1.SCI4MN Arachis hypogaea HOM05D005355 ORTHO05D006591 4.1e-90 336.3 468 48.9
Psat5g132440 Pisum sativum HOM05D005355 ORTHO05D006591 4.1e-90 336.3 462 52.2
arahy.Tifrunner.gnm1.ann1.Y2U2DK Arachis hypogaea HOM05D005355 ORTHO05D006591 9.1e-90 335.1 446 51.3
TPR.G24014 Trifolium pratense HOM05D005355 ORTHO05D006591 9.1e-90 335.1 440 52.7
Gohir.D05G236700 Gossypium hirsutum HOM05D005355 ORTHO05D006591 2.7e-89 333.6 428 56.8
PSO528G0270 Papaver somniferum HOM05D005355 ORTHO05D006591 2.7e-89 333.6 438 49.5
Gohir.A05G234400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 5.9e-89 332.4 456 55.5
Hund27026 Selenicereus undatus HOM05D005355 ORTHO05D006591 1.0e-88 331.6 463 47.1
FAN24G2565 Fragaria x ananassa HOM05D005355 ORTHO05D006591 9.4e-87 325.1 432 50.9
Cfa016002 Carpinus fangiana HOM05D005355 ORTHO05D006591 2.1e-86 323.9 385 59.0
ClCG08G005570 Citrullus lanatus HOM05D005355 ORTHO05D006591 2.1e-86 323.9 418 52.4
FAN20G1264 Fragaria x ananassa HOM05D005355 ORTHO05D006591 2.7e-86 323.6 432 50.7
EL10Ac1g01045 Beta vulgaris HOM05D005355 ORTHO05D006591 3.6e-86 323.2 436 52.5
Thhalv10029139m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 1.8e-85 320.9 441 47.2
Lalb_Chr08g0241491 Lupinus albus HOM05D005355 ORTHO05D006591 2.3e-85 320.5 450 52.9
MBI06_g20714_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 3.4e-84 316.6 429 49.0
MSTRG.326 Avicennia marina HOM05D005355 ORTHO05D006591 8.3e-83 312.0 450 46.4
vmacro00824 Vaccinium macrocarpon HOM05D005355 ORTHO05D006591 1.1e-82 311.6 582 43.1
THA.LOC104817273 Tarenaya hassleriana HOM05D005355 ORTHO05D006591 2.0e-81 307.4 424 50.9
RhsimUnG0093800 Rhododendron simsii HOM05D005355 ORTHO05D006591 1.0e-80 305.1 407 53.1
RcHm_v2.0_Chr6g0295601 Rosa chinensis HOM05D005355 ORTHO05D006591 1.0e-80 305.1 431 50.3
MELO3C010600.2 Cucumis melo HOM05D005355 ORTHO05D006591 3.2e-79 300.1 420 51.0
CAN.G127.21 Capsicum annuum HOM05D005355 ORTHO05D006591 3.6e-78 296.6 437 46.9
Sopen11g007660 Solanum pennellii HOM05D005355 ORTHO05D006591 1.8e-77 294.3 440 46.4
Lj4A622G14 Lonicera japonica HOM05D005355 ORTHO05D006591 1.2e-76 291.6 390 49.7
Solyc11g012920.3 Solanum lycopersicum HOM05D005355 ORTHO05D006591 2.0e-76 290.8 443 47.0
Sc01g0001210 Simmondsia chinensis HOM05D005355 ORTHO05D006591 3.4e-76 290.0 391 47.1
Aa31LG9G14260 Aethionema arabicum HOM05D005355 ORTHO05D006591 9.8e-76 288.5 421 50.1
Oeu062052.1 Olea europaea HOM05D005355 ORTHO05D006591 1.3e-75 288.1 447 47.9
Lsat_1_v5_gn_5_101461 Lactuca sativa HOM05D005355 ORTHO05D006591 2.2e-75 287.3 438 47.5
Cpa.g.sc36.50 Carica papaya HOM05D005355 ORTHO05D006591 3.7e-75 286.6 440 45.0
CARHR259390 Cardamine hirsuta HOM05D005355 ORTHO05D006591 8.3e-75 285.4 440 48.0
Os11g0544600 Oryza sativa ssp. japonica HOM05D005355 ORTHO05D006591 4.1e-74 283.1 446 43.0
FAN15G2971 Fragaria x ananassa HOM05D005355 ORTHO05D006591 2.0e-73 280.8 452 48.2
ECA238G0419 Erigeron canadensis HOM05D005355 ORTHO05D006591 3.5e-73 280.0 441 44.0
Haze_00460 Corylus avellana HOM05D005355 ORTHO05D006591 1.7e-72 277.7 354 55.4
SGA_v2.0_scaffold122G33176 Striga asiatica HOM05D005355 ORTHO05D006591 1.5e-71 274.6 426 47.2
Sp6g09690 Schrenkiella parvula HOM05D005355 ORTHO05D006591 1.9e-71 274.2 436 42.7
Cc00_g04310 Coffea canephora HOM05D005355 ORTHO05D006591 2.5e-71 273.9 416 44.0
Aqoxy6G00187 Aquilegia oxysepala HOM05D005355 ORTHO05D006591 9.5e-71 271.9 460 41.3
AL1G52440 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 2.8e-70 270.4 457 42.5
Migut.F01876 Erythranthe guttata HOM05D005355 ORTHO05D006591 1.8e-69 267.7 447 42.7
AL6G42080 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 6.8e-69 265.8 437 41.4
Thhalv10011453m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 8.9e-69 265.4 428 44.2
FvH4_2g26711 Fragaria vesca HOM05D005355 ORTHO05D006591 2.0e-68 264.2 392 48.2
HanXRQChr04g0109451 Helianthus annuus HOM05D005355 ORTHO05D006591 1.8e-66 257.7 454 40.3
AUR62019052 Chenopodium quinoa HOM05D005355 ORTHO05D006591 4.1e-66 256.5 399 48.6
Atru.chr13.1433 Acer truncatum HOM05D005355 ORTHO05D006591 7.0e-66 255.8 276 58.7
AT4G08310 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 1.6e-65 254.6 421 44.7
AT1G44780 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 5.9e-65 252.7 428 41.4
Sp1g33640 Schrenkiella parvula HOM05D005355 ORTHO05D006591 7.8e-65 252.3 426 45.1
Zm00001eb113700 Zea mays HOM05D005355 ORTHO05D006591 7.8e-65 252.3 427 41.7
Carub.0006s2687 Capsella rubella HOM05D005355 ORTHO05D006591 3.0e-64 250.4 426 41.5
CDE06G1640 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 3.9e-64 250.0 416 43.8
ATR0104G007 Amborella trichopoda HOM05D005355 ORTHO05D006591 1.2e-62 245.0 460 40.2
DCAR_011614 Daucus carota HOM05D005355 ORTHO05D006591 2.1e-62 244.2 335 49.6
C06p00770 Brassica napus HOM05D005355 ORTHO05D006591 8.0e-62 242.3 427 40.7
BcaB07g33934 Brassica carinata HOM05D005355 ORTHO05D006591 1.0e-61 241.9 417 42.2
MBI15_g20159_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.4e-61 241.5 426 41.1
A10p07350 Brassica napus HOM05D005355 ORTHO05D006591 2.3e-61 240.7 431 41.5
BraSC36t46079Z Brassica rapa HOM05D005355 ORTHO05D006591 2.3e-61 240.7 431 41.5
MBI15_g24178_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 2.0e-60 237.7 426 45.3
COL.COLO4_35946 Corchorus olitorius HOM05D005355 ORTHO05D006591 3.7e-59 233.4 411 41.8
Nitab4.5_0001803g0130 Nicotiana tabacum HOM05D005355 ORTHO05D006591 8.3e-59 232.3 372 46.0
SHI29459 Sapria himalayana HOM05D005355 ORTHO05D006591 5.4e-58 229.6 424 40.1
unitig_52.g17510 Utricularia gibba HOM05D005355 ORTHO05D006467 5.4e-58 229.6 476 39.3
Sed0010827 Sechium edule HOM05D005355 ORTHO05D006591 7.0e-58 229.2 337 51.9
BolC6t35219H Brassica oleracea HOM05D005355 ORTHO05D006591 4.6e-57 226.5 415 40.2
CARHR036040 Cardamine hirsuta HOM05D005355 ORTHO05D006591 4.7e-54 216.5 446 40.1
BcaC08g42867 Brassica carinata HOM05D005355 ORTHO05D006591 6.2e-54 216.1 427 38.9
AUR62027892 Chenopodium quinoa HOM05D005355 ORTHO05D006591 2.7e-41 174.1 360 41.9
Atru.chr13.1434 Acer truncatum HOM05D005355 ORTHO05D006591 1.0e-40 172.2 178 59.0
MBI15_g20157_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D010248 1.4e-34 151.8 276 42.4
CDE06G0823 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 1.9e-34 151.4 130 67.7
arahy.Tifrunner.gnm1.ann1.V8LFJN Arachis hypogaea HOM05D005355 ORTHO05D006591 3.3e-31 140.6 316 37.7
CDE06G1231 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 4.8e-30 136.7 273 38.5
AagrBONN_evm.TU.Sc2ySwM_362.1810 Anthoceros agrestis HOM05D005355 ORTHO05D006591 8.1e-30 136.0 502 28.7
MBI15_g19197_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 5.3e-29 133.3 98 70.4
Pp3c21_16190 Physcomitrium patens HOM05D005355 ORTHO05D006591 5.3e-29 133.3 467 34.3
Mapoly0004s0202 Marchantia polymorpha HOM05D005355 ORTHO05D006591 9.0e-29 132.5 471 29.7
Carub.0001s3530 Capsella rubella HOM05D005355 ORTHO05D006591 2.0e-28 131.3 166 52.4
Cpa.g.sc36.52 Carica papaya HOM05D005355 ORTHO05D006591 6.4e-27 126.3 184 42.4
SMO230G0121 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 8.7e-24 115.9 431 27.4
Peaxi162Scf00914g00033 Petunia axillaris HOM05D005355 ORTHO05D006591 4.0e-21 107.1 292 33.9
HPP92_011157 Vanilla planifolia HOM05D005355 ORTHO05D006591 9.0e-21 105.9 434 28.8
SMO367G1068 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 3.4e-20 104.0 410 28.3
CBR_g29492 Chara braunii HOM05D005355 ORTHO05D006591 1.7e-19 101.7 108 50.9
SMO230G0058 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 2.1e-17 94.7 108 50.0
Nitab4.5_0001273g0020 Nicotiana tabacum HOM05D005355 ORTHO05D006591 1.9e-15 88.2 331 29.0
Nn8g40262 Nelumbo nucifera HOM05D005355 ORTHO05D006591 4.3e-15 87.0 78 57.7
DCAR_011615 Daucus carota HOM05D005355 ORTHO05D006591 6.9e-13 79.7 58 63.8
SGA_v2.0_scaffold340G49302 Striga asiatica HOM05D005355 ORTHO05D006591 2.9e-11 74.3 135 40.0
Nitab4.5_0001273g0010 Nicotiana tabacum HOM05D005355 ORTHO05D006591 3.8e-11 73.9 68 54.4
Nitab4.5_0001803g0110 Nicotiana tabacum HOM05D005355 ORTHO05D006591 3.2e-10 70.9 54 59.3
SGA_v2.0_scaffold340G49301 Striga asiatica HOM05D005355 ORTHO05D006591 6.7e-08 63.2 67 53.7
SEGI_25872 Sequoiadendron giganteum HOM05D005355 ORTHO05D006591 8.7e-08 62.8 365 31.2
MBI15_g42534_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.9e-07 61.6 59 50.8


User provided reference genes

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