Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2378 Punica granatum HOM05D006151 ORTHO05D007487 2.1e-127 459.1 247 100.0
PGR100G0011 Punica granatum HOM05D006151 ORTHO05D007487 2.1e-127 459.1 247 100.0
PGR080G0005 Punica granatum HOM05D006151 ORTHO05D007487 1.1e-112 410.2 222 99.5
Cfa018318 Carpinus fangiana HOM05D006151 ORTHO05D007487 2.5e-64 249.6 217 57.6
Actinidia04761 Actinidia chinensis HOM05D006151 ORTHO05D007487 1.5e-61 240.4 222 56.8
Dinv25871 Davidia involucrata HOM05D006151 ORTHO05D007487 3.4e-61 239.2 237 53.6
TAR628G1632 Trochodendron aralioides HOM05D006151 ORTHO05D007487 1.1e-59 234.2 238 52.1
CANSAT25G1414 Cannabis sativa HOM05D006151 ORTHO05D007487 1.9e-59 233.4 234 52.1
Eucgr.F04235 Eucalyptus grandis HOM05D006151 ORTHO05D007487 1.9e-59 233.4 227 54.6
COL.COLO4_04528 Corchorus olitorius HOM05D006151 ORTHO05D007487 9.2e-59 231.1 246 52.8
Atru.chr13.2098 Acer truncatum HOM05D006151 ORTHO05D007487 6.0e-58 228.4 243 51.9
TAR381G1121 Trochodendron aralioides HOM05D006151 ORTHO05D007487 1.0e-57 227.6 233 52.8
Manes.02G180000 Manihot esculenta HOM05D006151 ORTHO05D007487 1.7e-57 226.9 237 50.6
GSVIVG01034539001 Vitis vinifera HOM05D006151 ORTHO05D007487 1.7e-57 226.9 236 53.0
Duzib041G0750 Durio zibethinus HOM05D006151 ORTHO05D007487 2.3e-57 226.5 240 52.5
FAN20G0746 Fragaria x ananassa HOM05D006151 ORTHO05D007487 3.0e-57 226.1 241 50.2
FvH4_2g13650 Fragaria vesca HOM05D006151 ORTHO05D007487 8.6e-57 224.6 238 51.7
Lj5g0026688 Lotus japonicus HOM05D006151 ORTHO05D007487 8.6e-57 224.6 238 50.4
Rhsim11G0083500 Rhododendron simsii HOM05D006151 ORTHO05D007487 1.1e-56 224.2 218 56.0
Thecc.08G153600 Theobroma cacao HOM05D006151 ORTHO05D007487 1.1e-56 224.2 233 51.9
CSS0023884 Camellia sinensis var. sinensis HOM05D006151 ORTHO05D007487 1.5e-56 223.8 235 51.1
FAN27G2560 Fragaria x ananassa HOM05D006151 ORTHO05D007487 1.5e-56 223.8 234 51.7
FAN24G0867 Fragaria x ananassa HOM05D006151 ORTHO05D007487 1.9e-56 223.4 238 51.3
Ciclev10002306m.g Citrus clementina HOM05D006151 ORTHO05D007487 2.5e-56 223.0 245 51.0
RcHm_v2.0_Chr6g0275291 Rosa chinensis HOM05D006151 ORTHO05D007487 3.3e-56 222.6 240 50.8
Duzib116G0486 Durio zibethinus HOM05D006151 ORTHO05D007487 2.1e-55 219.9 232 51.7
FAN15G1313 Fragaria x ananassa HOM05D006151 ORTHO05D007487 2.1e-55 219.9 238 50.8
Potri.002G067600 Populus trichocarpa HOM05D006151 ORTHO05D007487 2.3e-54 216.5 238 49.2
Gorai.005G078700 Gossypium raimondii HOM05D006151 ORTHO05D007487 6.8e-54 214.9 229 52.8
Nitab4.5_0001062g0090 Nicotiana tabacum HOM05D006151 ORTHO05D007487 8.9e-54 214.5 207 54.1
Gohir.D02G069400 Gossypium hirsutum HOM05D006151 ORTHO05D007487 5.8e-53 211.8 229 52.4
Hma1.2p1_0105F.1_g050630 Hydrangea macrophylla HOM05D006151 ORTHO05D007487 1.3e-52 210.7 239 49.4
Cpa.g.sc21.206 Carica papaya HOM05D006151 ORTHO05D007487 2.9e-52 209.5 257 48.6
Dinv41078 Davidia involucrata HOM05D006151 ORTHO05D007487 4.9e-52 208.8 244 49.6
vmacro01457 Vaccinium macrocarpon HOM05D006151 ORTHO05D007487 4.9e-52 208.8 226 54.0
Gohir.A02G063800 Gossypium hirsutum HOM05D006151 ORTHO05D007487 8.4e-52 208.0 213 53.5
Phvul.007G081100 Phaseolus vulgaris HOM05D006151 ORTHO05D007487 8.4e-52 208.0 234 49.1
MD05G1026900 Malus domestica HOM05D006151 ORTHO05D007487 1.4e-51 207.2 247 49.0
Cc10_g14430 Coffea canephora HOM05D006151 ORTHO05D007487 3.2e-51 206.1 224 51.8
Medtr1g098580 Medicago truncatula HOM05D006151 ORTHO05D007487 4.1e-51 205.7 217 55.3
Nitab4.5_0009071g0020 Nicotiana tabacum HOM05D006151 ORTHO05D007487 5.4e-51 205.3 207 52.7
Solyc04g071500.4 Solanum lycopersicum HOM05D006151 ORTHO05D007487 5.4e-51 205.3 240 49.6
TWI34G1794 Tripterygium wilfordii HOM05D006151 ORTHO05D007487 5.4e-51 205.3 244 46.7
arahy.Tifrunner.gnm1.ann1.2F6CI2 Arachis hypogaea HOM05D006151 ORTHO05D007487 7.1e-51 204.9 232 50.9
Peaxi162Scf00599g00048 Petunia axillaris HOM05D006151 ORTHO05D007487 7.1e-51 204.9 228 50.0
CAN.G268.27 Capsicum annuum HOM05D006151 ORTHO05D007487 1.2e-50 204.1 228 48.2
Glyma.20G168200 Glycine max HOM05D006151 ORTHO05D007487 1.2e-50 204.1 236 49.2
Sopen04g027470 Solanum pennellii HOM05D006151 ORTHO05D007487 1.2e-50 204.1 240 49.2
CiPaw.15G015800 Carya illinoinensis HOM05D006151 ORTHO05D007487 3.5e-50 202.6 240 45.8
VMungo0720G2232 Vigna mungo HOM05D006151 ORTHO05D007487 3.5e-50 202.6 214 51.9
MSTRG.1087 Avicennia marina HOM05D006151 ORTHO05D007487 6.0e-50 201.8 236 49.6
Potri.005G192800 Populus trichocarpa HOM05D006151 ORTHO05D007487 1.7e-49 200.3 246 47.6
Psat6g192320 Pisum sativum HOM05D006151 ORTHO05D007487 2.3e-49 199.9 222 51.8
ClCG08G007050 Citrullus lanatus HOM05D006151 ORTHO05D007487 3.0e-49 199.5 234 47.9
Duzib093G0584 Durio zibethinus HOM05D006151 ORTHO05D007487 3.9e-49 199.1 232 49.1
Glyma.10G223700 Glycine max HOM05D006151 ORTHO05D007487 5.1e-49 198.7 219 51.6
MD10G1026200 Malus domestica HOM05D006151 ORTHO05D007487 1.1e-48 197.6 240 47.1
Prupe.8G031400 Prunus persica HOM05D006151 ORTHO05D007487 1.1e-48 197.6 244 47.1
MELO3C008336.2 Cucumis melo HOM05D006151 ORTHO05D007487 5.6e-48 195.3 231 48.1
Gohir.D05G244900 Gossypium hirsutum HOM05D006151 ORTHO05D007487 9.6e-48 194.5 225 48.4
Lalb_Chr06g0161651 Lupinus albus HOM05D006151 ORTHO05D007487 1.2e-47 194.1 234 47.4
QL02p039028 Quercus lobata HOM05D006151 ORTHO05D007487 1.2e-47 194.1 235 46.8
PGSC0003DMG400024091 Solanum tuberosum HOM05D006151 ORTHO05D007487 1.2e-47 194.1 239 47.3
PSO210G3290 Papaver somniferum HOM05D006151 ORTHO05D007487 2.1e-47 193.4 241 44.0
Nn5g28758 Nelumbo nucifera HOM05D006151 ORTHO05D007487 2.8e-47 193.0 213 47.9
Sed0016357 Sechium edule HOM05D006151 ORTHO05D007487 4.7e-47 192.2 227 47.6
DCAR_001140 Daucus carota HOM05D006151 ORTHO05D007487 1.8e-46 190.3 225 48.4
TWI60G0448 Tripterygium wilfordii HOM05D006151 ORTHO05D007487 3.1e-46 189.5 186 53.2
Oeu046040.1 Olea europaea HOM05D006151 ORTHO05D007487 5.2e-46 188.7 231 48.5
Gorai.009G254700 Gossypium raimondii HOM05D006151 ORTHO05D007487 6.8e-46 188.3 225 47.6
TPR.G17045 Trifolium pratense HOM05D006151 ORTHO05D007487 1.2e-45 187.6 221 48.9
PSO447G0272 Papaver somniferum HOM05D006151 ORTHO05D007487 4.4e-45 185.7 235 43.8
VMungo0464G0684 Vigna mungo HOM05D006151 ORTHO05D007487 7.6e-45 184.9 226 44.7
Nn1g06074 Nelumbo nucifera HOM05D006151 ORTHO05D007487 1.3e-44 184.1 233 43.8
Gohir.A05G243900 Gossypium hirsutum HOM05D006151 ORTHO05D007487 2.2e-44 183.3 222 47.3
THA.LOC104813720 Tarenaya hassleriana HOM05D006151 ORTHO05D007487 2.9e-44 183.0 251 45.0
Glyma.16G166000 Glycine max HOM05D006151 ORTHO05D007487 3.8e-44 182.6 232 46.1
SGA_v2.0_scaffold24G10349 Striga asiatica HOM05D000219 ORTHO05D000226 4.9e-44 182.2 203 49.8
Migut.C00998 Erythranthe guttata HOM05D006151 ORTHO05D007487 1.1e-43 181.0 197 51.8
Aa31LG7G5240 Aethionema arabicum HOM05D006151 ORTHO05D007487 4.2e-43 179.1 191 52.9
arahy.Tifrunner.gnm1.ann1.5IW37T Arachis hypogaea HOM05D006151 ORTHO05D007487 7.1e-43 178.3 182 54.4
Phvul.004G093600 Phaseolus vulgaris HOM05D006151 ORTHO05D007487 2.1e-42 176.8 211 47.9
Sp1g18760 Schrenkiella parvula HOM05D006151 ORTHO05D007487 3.5e-42 176.0 237 45.6
CARHR021560 Cardamine hirsuta HOM05D006151 ORTHO05D007487 6.0e-42 175.3 230 47.8
AT1G21090 Arabidopsis thaliana HOM05D006151 ORTHO05D007487 1.3e-41 174.1 229 47.6
Manes.18G092600 Manihot esculenta HOM05D006151 ORTHO05D007487 1.7e-41 173.7 201 47.8
BcaB03g14281 Brassica carinata HOM05D006151 ORTHO05D007487 2.3e-41 173.3 238 46.6
Hund26694 Selenicereus undatus HOM05D006151 ORTHO05D007487 6.6e-41 171.8 251 40.6
Peaxi162Scf01294g00115 Petunia axillaris HOM05D006151 ORTHO05D007487 1.1e-40 171.0 241 44.0
AL1G34140 Arabidopsis lyrata HOM05D006151 ORTHO05D007487 1.9e-40 170.2 230 46.1
MBI09_g40713_MAGBIO Magnolia biondii HOM05D006151 ORTHO05D007487 1.9e-40 170.2 217 45.6
BcaB07g32102 Brassica carinata HOM05D006151 ORTHO05D007487 2.5e-40 169.9 237 43.9
THA.LOC104812035 Tarenaya hassleriana HOM05D006151 ORTHO05D007487 3.3e-40 169.5 201 50.2
Aqoxy5G02075 Aquilegia oxysepala HOM05D006151 ORTHO05D007487 4.3e-40 169.1 217 49.3
Carub.0001s2055 Capsella rubella HOM05D006151 ORTHO05D007487 4.3e-40 169.1 222 48.6
Ca_10677_v3 Cicer arietinum L. HOM05D006151 ORTHO05D007487 5.6e-40 168.7 219 46.1
Thhalv10008611m.g Eutrema salsugineum HOM05D006151 ORTHO05D007487 5.6e-40 168.7 191 52.4
Nitab4.5_0002487g0030 Nicotiana tabacum HOM05D006151 ORTHO05D007487 9.6e-40 167.9 200 51.0
EL10Ac1g01556 Beta vulgaris HOM05D006151 ORTHO05D007487 2.8e-39 166.4 234 44.9
C05p19820 Brassica napus HOM05D006151 ORTHO05D007487 4.8e-39 165.6 238 44.5
BolC5t30681H Brassica oleracea HOM05D006151 ORTHO05D007487 4.8e-39 165.6 238 44.5
AUR62013592 Chenopodium quinoa HOM05D006151 ORTHO05D007487 4.8e-39 165.6 236 40.3
BraA06t24819Z Brassica rapa HOM05D006151 ORTHO05D007487 8.1e-39 164.9 231 45.5
HanXRQChr05g0161971 Helianthus annuus HOM05D006151 ORTHO05D007487 1.8e-38 163.7 248 41.9
A06p17160 Brassica napus HOM05D006151 ORTHO05D007487 2.4e-38 163.3 230 43.5
CsaV3_6G005160 Cucumis sativus L. HOM05D006151 ORTHO05D007487 1.2e-37 161.0 222 44.6
AUR62026702 Chenopodium quinoa HOM05D006151 ORTHO05D007487 2.0e-37 160.2 208 42.3
BraA07t29267Z Brassica rapa HOM05D006151 ORTHO05D007487 3.8e-36 156.0 201 47.8
A07p15290 Brassica napus HOM05D006151 ORTHO05D007487 4.9e-36 155.6 201 47.8
C07p22470 Brassica napus HOM05D006151 ORTHO05D007487 6.4e-36 155.2 196 48.0
BolC7t42748H Brassica oleracea HOM05D006151 ORTHO05D007487 5.4e-35 152.1 196 47.4
Lsat_1_v5_gn_6_100560 Lactuca sativa HOM05D006151 ORTHO05D007487 5.4e-35 152.1 277 36.8
BcaC06g34887 Brassica carinata HOM05D006151 ORTHO05D007487 1.6e-34 150.6 184 49.5
Actinidia29533 Actinidia chinensis HOM05D006151 ORTHO05D007487 2.3e-33 146.7 174 49.4
Sed0009804 Sechium edule HOM05D006151 ORTHO05D007487 3.3e-32 142.9 237 39.2
Hund17438 Selenicereus undatus HOM05D006151 ORTHO05D007487 7.3e-32 141.7 187 41.7
ECA246G2194 Erigeron canadensis HOM05D006151 ORTHO05D007487 8.1e-31 138.3 289 36.3
unitig_748.g7705 Utricularia gibba HOM05D006151 ORTHO05D007487 4.5e-29 132.5 226 38.9
BcaC05g26017 Brassica carinata HOM05D006151 ORTHO05D007487 1.3e-28 131.0 201 43.8
Nitab4.5_0010143g0010 Nicotiana tabacum HOM05D006151 ORTHO05D007487 4.8e-23 112.5 218 40.4
Ah.05g167920 Amaranthus hybridus HOM05D006151 ORTHO05D007487 6.9e-22 108.6 212 34.4
Lj7C374T8 Lonicera japonica HOM05D006151 ORTHO05D007487 6.5e-20 102.1 154 42.9
HPP92_004418 Vanilla planifolia HOM05D006151 ORTHO05D007487 3.9e-17 92.8 229 35.8
CDE08G0602 Ceratophyllum demersum HOM05D006151 ORTHO05D007487 5.7e-16 89.0 220 33.2
Nn1g02131 Nelumbo nucifera HOM05D006151 ORTHO05D007487 4.1e-14 82.8 176 33.5
Peaxi162Scf00476g00615 Petunia axillaris HOM05D002901 ORTHO05D003183 6.1e-10 68.9 93 45.2
Sc02g0004030 Simmondsia chinensis HOM05D006151 ORTHO05D007487 1.3e-07 61.2 131 36.6
GSVIVG01026618001 Vitis vinifera HOM05D006151 ORTHO05D007487 4.8e-07 59.3 110 36.4


User provided reference genes

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