Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2349 Punica granatum HOM05D002654 ORTHO05D002430 4.7e-177 624.4 309 100.0
Dinv38698 Davidia involucrata HOM05D002654 ORTHO05D002430 4.0e-27 126.3 397 31.2
Eucgr.B00480 Eucalyptus grandis HOM05D002654 ORTHO05D002430 1.5e-26 124.4 332 33.4
PGR142G0432 Punica granatum HOM05D002654 ORTHO05D002430 4.9e-25 119.4 365 28.8
CSS0036856 Camellia sinensis var. sinensis HOM05D002654 ORTHO05D002430 8.6e-22 108.6 313 33.9
CSS0006941 Camellia sinensis var. sinensis HOM05D002654 ORTHO05D002430 3.3e-21 106.7 347 32.3
Dinv19955 Davidia involucrata HOM05D000087 ORTHO05D000439 9.5e-21 105.1 286 31.8
Nitab4.5_0000269g0010 Nicotiana tabacum HOM05D002654 ORTHO05D002430 4.7e-20 102.8 279 31.9
FAN08G1738 Fragaria x ananassa HOM05D002654 ORTHO05D002430 1.4e-19 101.3 290 31.4
Nitab4.5_0000842g0040 Nicotiana tabacum HOM05D002654 ORTHO05D002430 8.9e-19 98.6 387 29.5
Actinidia37635 Actinidia chinensis HOM05D002654 ORTHO05D002430 1.2e-18 98.2 290 30.7
DCAR_016544 Daucus carota HOM05D002654 ORTHO05D002430 2.0e-18 97.4 316 28.8
MD14G1198800 Malus domestica HOM05D002654 ORTHO05D002430 2.0e-18 97.4 329 29.8
RcHm_v2.0_Chr7g0181121 Rosa chinensis HOM05D002654 ORTHO05D002430 2.0e-18 97.4 307 29.3
GSVIVG01008021001 Vitis vinifera HOM05D002654 ORTHO05D002430 2.6e-18 97.1 382 27.5
Cc04_g16770 Coffea canephora HOM05D000087 ORTHO05D000439 5.8e-18 95.9 340 30.6
Nitab4.5_0012137g0010 Nicotiana tabacum HOM05D002654 ORTHO05D002430 5.8e-18 95.9 388 28.4
FAN04G1767 Fragaria x ananassa HOM05D002654 ORTHO05D002430 9.9e-18 95.1 324 28.7
Gohir.A12G176900 Gossypium hirsutum HOM05D002654 ORTHO05D002430 9.9e-18 95.1 281 33.5
CAN.G837.8 Capsicum annuum HOM05D002654 ORTHO05D002430 1.7e-17 94.4 331 28.7
FAN18G2581 Fragaria x ananassa HOM05D002654 ORTHO05D002430 1.7e-17 94.4 290 30.3
FvH4_5g15090 Fragaria vesca HOM05D002654 ORTHO05D002430 2.2e-17 94.0 291 30.2
Solyc03g116160.1 Solanum lycopersicum HOM05D002654 ORTHO05D002430 6.4e-17 92.4 394 28.4
Oeu022206.1 Olea europaea HOM05D002654 ORTHO05D002430 8.4e-17 92.0 320 29.1
FAN13G3070 Fragaria x ananassa HOM05D002654 ORTHO05D002430 1.1e-16 91.7 328 28.4
Gohir.D12G179400 Gossypium hirsutum HOM05D002654 ORTHO05D002430 1.1e-16 91.7 282 33.0
Nitab4.5_0002352g0050 Nicotiana tabacum HOM05D002654 ORTHO05D002430 1.1e-16 91.7 277 30.3
Prupe.5G191900 Prunus persica HOM05D002654 ORTHO05D002430 3.2e-16 90.1 314 28.3
Sabra15G0087900 Salix brachista HOM05D002654 ORTHO05D002430 3.2e-16 90.1 425 25.6
Peaxi162Scf00274g00075 Petunia axillaris HOM05D002654 ORTHO05D002430 4.1e-16 89.7 313 29.4
CSS0017824 Camellia sinensis var. sinensis HOM05D002654 ORTHO05D002430 9.2e-16 88.6 331 27.2
CSS0037456 Camellia sinensis var. sinensis HOM05D002654 ORTHO05D002430 1.2e-15 88.2 308 31.8
Manes.14G077400 Manihot esculenta HOM05D002654 ORTHO05D002430 1.2e-15 88.2 399 27.8
PGSC0003DMG400033102 Solanum tuberosum HOM05D002654 ORTHO05D002430 1.2e-15 88.2 312 27.2
Sopen03g035130 Solanum pennellii HOM05D002654 ORTHO05D002430 1.6e-15 87.8 398 28.1
Cpa.g.sc111.2 Carica papaya HOM05D002654 ORTHO05D002430 2.7e-15 87.0 390 26.2
Manes.06G093600 Manihot esculenta HOM05D002654 ORTHO05D002430 2.7e-15 87.0 404 26.2
CSS0046015 Camellia sinensis var. sinensis HOM05D002654 ORTHO05D002430 3.5e-15 86.7 331 27.5
Cfa018955 Carpinus fangiana HOM05D002654 ORTHO05D002430 3.5e-15 86.7 338 29.0
Sc12g0006310 Simmondsia chinensis HOM05D002654 ORTHO05D002430 7.8e-15 85.5 288 27.4
MSTRG.23024 Avicennia marina HOM05D002654 ORTHO05D002430 1.7e-14 84.3 267 30.7
Gorai.008G192500 Gossypium raimondii HOM05D002654 ORTHO05D002430 1.7e-14 84.3 223 34.5
CiPaw.11G043200 Carya illinoinensis HOM05D002654 ORTHO05D002430 2.3e-14 84.0 269 30.9
Haze_07337 Corylus avellana HOM05D002654 ORTHO05D002430 3.0e-14 83.6 372 26.3
Rhsim08G0155700 Rhododendron simsii HOM05D002654 ORTHO05D002430 3.0e-14 83.6 376 27.4
Thecc.03G084900 Theobroma cacao HOM05D002654 ORTHO05D002430 3.0e-14 83.6 318 29.2
AUR62008391 Chenopodium quinoa HOM05D002654 ORTHO05D002430 5.1e-14 82.8 328 26.5
COL.COLO4_24533 Corchorus olitorius HOM05D002654 ORTHO05D002430 5.1e-14 82.8 412 24.8
Solyc06g069880.1 Solanum lycopersicum HOM05D002654 ORTHO05D002430 1.1e-13 81.6 261 28.4
Sopen06g027150 Solanum pennellii HOM05D002654 ORTHO05D002430 1.5e-13 81.3 264 27.7
Ah.02g113400 Amaranthus hybridus HOM05D002654 ORTHO05D002430 3.3e-13 80.1 333 27.0
CiPaw.05G136200 Carya illinoinensis HOM05D002654 ORTHO05D002430 4.3e-13 79.7 428 26.4
Dinv34160 Davidia involucrata HOM05D002654 ORTHO05D002430 4.3e-13 79.7 408 26.5
Oeu010873.1 Olea europaea HOM05D002654 ORTHO05D002430 4.3e-13 79.7 310 31.3
Potri.015G062600 Populus trichocarpa HOM05D002654 ORTHO05D002430 5.6e-13 79.3 424 23.8
Peaxi162Scf00013g00213 Petunia axillaris HOM05D002654 ORTHO05D002430 7.3e-13 79.0 277 29.6
Peaxi162Scf06066g00003 Petunia axillaris HOM05D000087 ORTHO05D002430 7.3e-13 79.0 277 29.6
SalBow7G4240 Salvia bowleyana HOM05D002654 ORTHO05D002430 7.3e-13 79.0 204 33.3
AUR62021705 Chenopodium quinoa HOM05D002654 ORTHO05D002430 9.6e-13 78.6 286 28.3
Hma1.2p1_0265F.1_g106720 Hydrangea macrophylla HOM05D002654 ORTHO05D002430 1.2e-12 78.2 394 25.1
Duzib084G1162 Durio zibethinus HOM05D002654 ORTHO05D002430 1.6e-12 77.8 314 28.0
Cfa008990 Carpinus fangiana HOM05D002654 ORTHO05D002430 4.7e-12 76.3 406 27.3
Sc04g0008200 Simmondsia chinensis HOM05D002654 ORTHO05D002430 6.2e-12 75.9 329 27.1
Dinv16639 Davidia involucrata HOM05D002654 ORTHO05D002430 8.1e-12 75.5 406 26.1
Gohir.A07G063650 Gossypium hirsutum HOM05D002654 ORTHO05D002430 8.1e-12 75.5 250 28.4
Sed0007158 Sechium edule HOM05D002654 ORTHO05D002430 8.1e-12 75.5 268 29.1
Migut.D01825 Erythranthe guttata HOM05D002654 ORTHO05D002430 1.1e-11 75.1 268 29.1
CiPaw.12G013900 Carya illinoinensis HOM05D002654 ORTHO05D002430 1.8e-11 74.3 233 25.8
Nn4g23142 Nelumbo nucifera HOM05D002654 ORTHO05D002430 4.0e-11 73.2 210 32.9
CAN.G628.23 Capsicum annuum HOM05D002654 ORTHO05D002430 5.2e-11 72.8 298 26.8
ClCG04G012340 Citrullus lanatus HOM05D002654 ORTHO05D002430 5.2e-11 72.8 195 32.3
Rhsim08G0156100 Rhododendron simsii HOM05D002654 ORTHO05D002430 6.9e-11 72.4 291 28.2
MELO3C001974.2 Cucumis melo HOM05D006541 ORTHO05D008471 8.9e-11 72.0 190 32.6
SGA_v2.0_scaffold7G04069 Striga asiatica HOM05D002654 ORTHO05D002430 8.9e-11 72.0 223 32.3
ECA246G5276 Erigeron canadensis HOM05D000087 ORTHO05D000439 1.5e-10 71.2 180 36.7
Cc11_g13080 Coffea canephora HOM05D002654 ORTHO05D002430 2.0e-10 70.9 307 28.7
CsaV3_1G005380 Cucumis sativus L. HOM05D002654 ORTHO05D002430 5.8e-10 69.3 190 31.6
Sed0007876 Sechium edule HOM05D002654 ORTHO05D002430 9.9e-10 68.6 194 32.0
TAR622G1009 Trochodendron aralioides HOM05D002654 ORTHO05D002430 9.9e-10 68.6 145 33.8
HanXRQChr12g0362591 Helianthus annuus HOM05D002654 ORTHO05D002430 1.3e-09 68.2 314 23.9
PGSC0003DMG400031263 Solanum tuberosum HOM05D002654 ORTHO05D002430 1.3e-09 68.2 311 25.4
TAR371G1053 Trochodendron aralioides HOM05D002654 ORTHO05D002430 1.3e-09 68.2 400 24.2
Oeu033362.1 Olea europaea HOM05D002654 ORTHO05D002430 1.7e-09 67.8 339 25.4
TWI15G0870 Tripterygium wilfordii HOM05D002654 ORTHO05D002430 2.2e-09 67.4 324 27.5
QL10p016685 Quercus lobata HOM05D002654 ORTHO05D002430 2.9e-09 67.0 190 30.0
Lsat_1_v5_gn_8_53241 Lactuca sativa HOM05D002654 ORTHO05D002430 3.8e-09 66.6 275 28.4
Oeu054883.1 Olea europaea HOM05D002654 ORTHO05D002430 3.8e-09 66.6 261 27.2
THA.LOC104812550 Tarenaya hassleriana HOM05D002654 ORTHO05D002430 3.8e-09 66.6 325 26.2
ClCG05G024340 Citrullus lanatus HOM05D002654 ORTHO05D002430 6.4e-09 65.9 309 25.6
TWI60G0873 Tripterygium wilfordii HOM05D002654 ORTHO05D002430 6.4e-09 65.9 374 25.4
CiPaw.06G084100 Carya illinoinensis HOM05D002654 ORTHO05D002430 8.4e-09 65.5 186 29.6
ECA232G0660 Erigeron canadensis HOM05D000087 ORTHO05D000439 1.1e-08 65.1 239 29.7
Duzib205G1664 Durio zibethinus HOM05D002654 ORTHO05D002430 1.4e-08 64.7 89 47.2
Gohir.D07G068400 Gossypium hirsutum HOM05D002654 ORTHO05D002430 1.4e-08 64.7 74 50.0
Gorai.001G071900 Gossypium raimondii HOM05D002654 ORTHO05D002430 1.4e-08 64.7 74 50.0
Nn3g17221 Nelumbo nucifera HOM05D002654 ORTHO05D002430 1.4e-08 64.7 143 36.4
Sopen05g003360 Solanum pennellii HOM05D002654 ORTHO05D002430 1.4e-08 64.7 311 24.8
Atru.chr9.2262 Acer truncatum HOM05D002654 ORTHO05D002430 1.9e-08 64.3 132 36.4
HanXRQChr12g0380721 Helianthus annuus HOM05D002654 ORTHO05D002430 2.4e-08 63.9 289 24.2
MD06G1192200 Malus domestica HOM05D002654 ORTHO05D002430 2.4e-08 63.9 322 25.8
TAR629G0269 Trochodendron aralioides HOM05D002654 ORTHO05D002430 3.2e-08 63.5 320 24.1
Ah.02g129730 Amaranthus hybridus HOM05D002654 ORTHO05D002430 5.4e-08 62.8 431 24.1
Solyc05g007480.1 Solanum lycopersicum HOM05D002654 ORTHO05D002430 5.4e-08 62.8 312 23.1
Lsat_1_v5_gn_4_108360 Lactuca sativa HOM05D002654 ORTHO05D002430 7.1e-08 62.4 199 30.7
Oeu054885.1 Olea europaea HOM05D002654 ORTHO05D002430 7.1e-08 62.4 356 24.4
unitig_22.g6521 Utricularia gibba HOM05D002654 ORTHO05D002430 7.1e-08 62.4 252 28.2
BolC8t49520H Brassica oleracea HOM05D010051 ORTHO05D002430 9.3e-08 62.0 240 27.9
CsaV3_5G032620 Cucumis sativus L. HOM05D002654 ORTHO05D002430 9.3e-08 62.0 350 24.3
Ciclev10020017m.g Citrus clementina HOM05D002654 ORTHO05D002430 1.2e-07 61.6 76 44.7
QL03p062934 Quercus lobata HOM05D002654 ORTHO05D002430 1.2e-07 61.6 229 29.7
Gohir.D03G092800 Gossypium hirsutum HOM05D002654 ORTHO05D002430 1.6e-07 61.2 221 28.5
Medtr5g040340 Medicago truncatula HOM05D002654 ORTHO05D002430 1.6e-07 61.2 305 25.2
Phvul.002G086000 Phaseolus vulgaris HOM05D002654 ORTHO05D002430 2.1e-07 60.8 352 23.3
QL03p064352 Quercus lobata HOM05D002654 ORTHO05D002430 2.1e-07 60.8 229 29.7
BcaB07g31896 Brassica carinata HOM05D010051 ORTHO05D002430 3.5e-07 60.1 251 27.5
BcaC05g25779 Brassica carinata HOM05D010051 ORTHO05D002430 4.6e-07 59.7 300 26.3
Ciclev10031315m.g Citrus clementina HOM05D002654 ORTHO05D002430 4.6e-07 59.7 352 25.3
VMungo1215G1652 Vigna mungo HOM05D002654 ORTHO05D002430 4.6e-07 59.7 346 24.6
Gohir.A03G066300 Gossypium hirsutum HOM05D002654 ORTHO05D002430 7.8e-07 58.9 234 27.8
BraA08t34952Z Brassica rapa HOM05D010051 ORTHO05D002430 1.0e-06 58.5 241 26.6
Gorai.003G096700 Gossypium raimondii HOM05D002654 ORTHO05D002430 1.0e-06 58.5 221 28.1
Peaxi162Scf00541g00022 Petunia axillaris HOM05D002654 ORTHO05D002430 1.0e-06 58.5 322 24.8
BcaC07g38950 Brassica carinata HOM05D010051 ORTHO05D002430 1.3e-06 58.2 242 26.4
C08p18940 Brassica napus HOM05D010051 ORTHO05D002430 1.3e-06 58.2 242 26.4
GSVIVG01029894001 Vitis vinifera HOM05D007561 ORTHO05D007661 1.3e-06 58.2 284 28.2
A08p30180 Brassica napus HOM05D010051 ORTHO05D002430 1.7e-06 57.8 241 26.6
Migut.L01302 Erythranthe guttata HOM05D002654 ORTHO05D002430 1.7e-06 57.8 269 26.8
MELO3C012089.2 Cucumis melo HOM05D002654 ORTHO05D002430 2.3e-06 57.4 342 23.1
Gohir.A03G098250 Gossypium hirsutum HOM05D002654 ORTHO05D002430 2.3e-06 57.4 340 25.9
Gohir.A12G105550 Gossypium hirsutum HOM05D002654 ORTHO05D002430 2.3e-06 57.4 340 25.9
COL.COLO4_23006 Corchorus olitorius HOM05D002654 ORTHO05D002430 3.0e-06 57.0 290 25.2
CAN.G58.27 Capsicum annuum HOM05D002654 ORTHO05D002430 3.9e-06 56.6 313 24.6
Gorai.005G141100 Gossypium raimondii HOM05D002654 ORTHO05D002430 3.9e-06 56.6 341 26.4
Gohir.D13G074166 Gossypium hirsutum HOM05D002654 ORTHO05D002430 5.1e-06 56.2 272 25.7
Gorai.013G084800 Gossypium raimondii HOM05D002654 ORTHO05D002430 5.1e-06 56.2 272 25.7
Oeu006506.1 Olea europaea HOM05D002654 ORTHO05D002430 5.1e-06 56.2 124 37.1
ECA234G4854 Erigeron canadensis HOM05D000087 ORTHO05D000439 6.6e-06 55.8 291 26.8


User provided reference genes

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