Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2327 Punica granatum HOM05D004450 ORTHO05D005491 1.1e-80 303.1 143 100.0
Eucgr.H00921 Eucalyptus grandis HOM05D004450 ORTHO05D005491 1.9e-19 99.8 67 74.6
QL12p035690 Quercus lobata HOM05D004450 ORTHO05D005491 9.2e-19 97.4 90 57.8
CiPaw.05G231800 Carya illinoinensis HOM05D004450 ORTHO05D005491 1.2e-18 97.1 67 73.1
Dinv13057 Davidia involucrata HOM05D004450 ORTHO05D005491 1.6e-18 96.7 66 74.2
Prupe.1G510000 Prunus persica HOM05D004450 ORTHO05D005491 2.1e-18 96.3 67 73.1
Sabra05G0127500 Salix brachista HOM05D004450 ORTHO05D005491 2.1e-18 96.3 67 73.1
arahy.Tifrunner.gnm1.ann1.T35Q4E Arachis hypogaea HOM05D004450 ORTHO05D005491 2.7e-18 95.9 70 71.4
Manes.02G157000 Manihot esculenta HOM05D004450 ORTHO05D005491 4.6e-18 95.1 68 70.6
Psat5g136520 Pisum sativum HOM05D004450 ORTHO05D005491 4.6e-18 95.1 70 68.6
RcHm_v2.0_Chr7g0240181 Rosa chinensis HOM05D004450 ORTHO05D005491 4.6e-18 95.1 67 71.6
arahy.Tifrunner.gnm1.ann1.KN8WKR Arachis hypogaea HOM05D004450 ORTHO05D005491 6.0e-18 94.7 70 70.0
Cfa015933 Carpinus fangiana HOM05D004450 ORTHO05D005491 1.0e-17 94.0 67 70.1
Ca_26313_v3 Cicer arietinum L. HOM05D004450 ORTHO05D005491 1.0e-17 94.0 70 68.6
Haze_00557 Corylus avellana HOM05D004450 ORTHO05D005491 1.0e-17 94.0 67 70.1
FAN04G1322 Fragaria x ananassa HOM05D004450 ORTHO05D005491 1.0e-17 94.0 67 70.1
MD08G1176200 Malus domestica HOM05D004450 ORTHO05D005491 1.0e-17 94.0 67 70.1
MD15G1361900 Malus domestica HOM05D004450 ORTHO05D005491 1.0e-17 94.0 67 70.1
Thecc.08G113700 Theobroma cacao HOM05D004450 ORTHO05D005491 1.0e-17 94.0 67 70.1
Duzib093G0537 Durio zibethinus HOM05D004450 ORTHO05D005491 1.3e-17 93.6 67 68.7
FvH4_5g38230 Fragaria vesca HOM05D004450 ORTHO05D005491 1.3e-17 93.6 67 70.1
FAN08G3465 Fragaria x ananassa HOM05D004450 ORTHO05D005491 1.3e-17 93.6 67 70.1
FAN13G1849 Fragaria x ananassa HOM05D004450 ORTHO05D005491 1.3e-17 93.6 67 70.1
FAN18G0908 Fragaria x ananassa HOM05D004450 ORTHO05D005491 1.3e-17 93.6 67 70.1
Glyma.04G107100 Glycine max HOM05D004450 ORTHO05D005491 1.3e-17 93.6 67 71.6
VMungo1309G1299 Vigna mungo HOM05D004450 ORTHO05D005491 1.3e-17 93.6 67 71.6
Actinidia10291 Actinidia chinensis HOM05D004450 ORTHO05D005491 2.3e-17 92.8 66 71.2
Glyma.06G106900 Glycine max HOM05D004450 ORTHO05D005491 2.3e-17 92.8 67 71.6
Sed0020591 Sechium edule HOM05D004450 ORTHO05D005491 2.3e-17 92.8 66 71.2
Aqoxy6G00526 Aquilegia oxysepala HOM05D004450 ORTHO05D005491 3.0e-17 92.4 66 71.2
CANSAT25G3861 Cannabis sativa HOM05D004450 ORTHO05D005491 3.0e-17 92.4 68 67.6
MELO3C022819.2 Cucumis melo HOM05D004450 ORTHO05D005491 5.0e-17 91.7 66 71.2
Manes.18G071100 Manihot esculenta HOM05D004450 ORTHO05D005491 5.0e-17 91.7 67 68.7
TAR628G1211 Trochodendron aralioides HOM05D004450 ORTHO05D005491 5.0e-17 91.7 66 69.7
Ciclev10003301m.g Citrus clementina HOM05D004450 ORTHO05D005491 6.6e-17 91.3 66 68.2
Gohir.A06G039400 Gossypium hirsutum HOM05D004450 ORTHO05D005491 6.6e-17 91.3 66 69.7
Gohir.D06G040400 Gossypium hirsutum HOM05D004450 ORTHO05D005491 6.6e-17 91.3 66 69.7
Gorai.010G045100 Gossypium raimondii HOM05D004450 ORTHO05D005491 6.6e-17 91.3 66 69.7
Phvul.009G027200 Phaseolus vulgaris HOM05D004450 ORTHO05D005491 6.6e-17 91.3 67 70.1
ClCG03G008890 Citrullus lanatus HOM05D004450 ORTHO05D005491 8.6e-17 90.9 66 71.2
Medtr3g073620 Medicago truncatula HOM05D004450 ORTHO05D005491 8.6e-17 90.9 70 65.7
Cpa.g.sc66.104 Carica papaya HOM05D004450 ORTHO05D005491 1.5e-16 90.1 66 69.7
Lalb_Chr08g0241811 Lupinus albus HOM05D004450 ORTHO05D005491 1.9e-16 89.7 71 69.0
Potri.002G091700 Populus trichocarpa HOM05D004450 ORTHO05D005491 1.9e-16 89.7 66 69.7
Gohir.D06G038300 Gossypium hirsutum HOM05D004450 ORTHO05D005491 2.5e-16 89.4 66 68.2
Lj4C711G4 Lonicera japonica HOM05D004450 ORTHO05D005491 2.5e-16 89.4 70 64.3
FAN08G1690 Fragaria x ananassa HOM05D003397 ORTHO05D004390 3.3e-16 89.0 66 65.2
BcaB07g32225 Brassica carinata HOM05D004450 ORTHO05D005491 4.3e-16 88.6 66 66.7
CSS0015865 Camellia sinensis var. sinensis HOM05D004450 ORTHO05D005491 4.3e-16 88.6 65 70.8
CSS0047020 Camellia sinensis var. sinensis HOM05D004450 ORTHO05D005491 4.3e-16 88.6 65 70.8
Aa31LG7G6050 Aethionema arabicum HOM05D004450 ORTHO05D005491 5.6e-16 88.2 67 65.7
C05p21090 Brassica napus HOM05D004450 ORTHO05D005491 5.6e-16 88.2 66 65.2
HanXRQChr11g0321021 Helianthus annuus HOM05D004450 ORTHO05D005491 5.6e-16 88.2 65 67.7
TPR.G28951 Trifolium pratense HOM05D004450 ORTHO05D005491 5.6e-16 88.2 71 66.2
Thhalv10006527m.g Eutrema salsugineum HOM05D004450 ORTHO05D005491 7.3e-16 87.8 67 65.7
A09p42700 Brassica napus HOM05D004450 ORTHO05D005491 9.5e-16 87.4 66 65.2
BraA09t39746Z Brassica rapa HOM05D004450 ORTHO05D005491 9.5e-16 87.4 66 65.2
ECA232G3655 Erigeron canadensis HOM05D004450 ORTHO05D005491 9.5e-16 87.4 65 67.7
BcaC05g26132 Brassica carinata HOM05D004450 ORTHO05D005491 1.2e-15 87.0 66 65.2
BolC5t30807H Brassica oleracea HOM05D004450 ORTHO05D005491 1.2e-15 87.0 66 65.2
PSO541G1294 Papaver somniferum HOM05D004450 ORTHO05D005491 1.2e-15 87.0 68 64.7
PSO675G2430 Papaver somniferum HOM05D004450 ORTHO05D005491 1.2e-15 87.0 68 64.7
SalBow7G0866 Salvia bowleyana HOM05D004450 ORTHO05D005491 1.2e-15 87.0 70 61.4
TWI56G0952 Tripterygium wilfordii HOM05D004450 ORTHO05D005491 1.2e-15 87.0 69 62.3
Atru.chr13.1280 Acer truncatum HOM05D004450 ORTHO05D005491 1.6e-15 86.7 67 64.2
TWI36G0771 Tripterygium wilfordii HOM05D004450 ORTHO05D005491 1.6e-15 86.7 66 65.2
Lj1g0009455 Lotus japonicus HOM05D004450 ORTHO05D005491 2.1e-15 86.3 66 66.7
Cc10_g05930 Coffea canephora HOM05D004450 ORTHO05D005491 3.6e-15 85.5 66 65.2
Gohir.A02G075404 Gossypium hirsutum HOM05D004450 ORTHO05D005491 3.6e-15 85.5 69 59.4
Lalb_Chr23g0270731 Lupinus albus HOM05D004450 ORTHO05D005491 4.7e-15 85.1 71 66.2
vmacro21221 Vaccinium macrocarpon HOM05D004450 ORTHO05D005491 4.7e-15 85.1 66 66.7
ATR0564G059 Amborella trichopoda HOM05D004450 ORTHO05D005491 1.1e-14 84.0 66 65.2
Nn5g28982 Nelumbo nucifera HOM05D004450 ORTHO05D005491 1.1e-14 84.0 59 71.2
Rhsim06G0086600 Rhododendron simsii HOM05D004450 ORTHO05D005491 1.1e-14 84.0 65 66.2
Oeu024568.7 Olea europaea HOM05D004450 ORTHO05D005491 1.4e-14 83.6 66 63.6
Sabra02G0072500 Salix brachista HOM05D004450 ORTHO05D005491 1.8e-14 83.2 62 67.7
Ah.05g168520 Amaranthus hybridus HOM05D004450 ORTHO05D005491 3.1e-14 82.4 66 63.6
Lsat_1_v5_gn_9_43360 Lactuca sativa HOM05D004450 ORTHO05D005491 3.1e-14 82.4 65 64.6
DCAR_008706 Daucus carota HOM05D004450 ORTHO05D005491 4.0e-14 82.0 66 62.1
SGA_v2.0_scaffold48G18010 Striga asiatica HOM05D004450 ORTHO05D005491 8.9e-14 80.9 68 61.8
Nitab4.5_0002534g0010 Nicotiana tabacum HOM05D004450 ORTHO05D005491 1.2e-13 80.5 65 63.1
Nitab4.5_0004450g0020 Nicotiana tabacum HOM05D004450 ORTHO05D005491 1.5e-13 80.1 65 63.1
CAN.G535.11 Capsicum annuum HOM05D004450 ORTHO05D005491 2.6e-13 79.3 65 61.5
ECA247G3327 Erigeron canadensis HOM05D004450 ORTHO05D005491 3.4e-13 79.0 66 62.1
Lsat_1_v5_gn_1_4060 Lactuca sativa HOM05D004450 ORTHO05D005491 9.9e-13 77.4 59 64.4
Peaxi162Scf00168g00521 Petunia axillaris HOM05D004450 ORTHO05D005491 9.9e-13 77.4 65 60.0
Solyc04g072630.4 Solanum lycopersicum HOM05D004450 ORTHO05D005491 1.3e-12 77.0 65 61.5
Sopen04g028830 Solanum pennellii HOM05D004450 ORTHO05D005491 1.3e-12 77.0 65 61.5
Migut.C00198 Erythranthe guttata HOM05D004450 ORTHO05D005491 2.9e-12 75.9 66 59.1
MBI02_g37828_MAGBIO Magnolia biondii HOM05D004450 ORTHO05D005491 4.9e-12 75.1 65 58.5
GSVIVG01008971001 Vitis vinifera HOM05D004450 ORTHO05D005491 6.4e-12 74.7 67 58.2
HPP92_005785 Vanilla planifolia HOM05D004450 ORTHO05D005491 1.1e-11 73.9 65 61.5
HPP92_005805 Vanilla planifolia HOM05D004450 ORTHO05D005491 1.1e-11 73.9 65 61.5
HanXRQChr02g0043761 Helianthus annuus HOM05D004450 ORTHO05D005491 1.4e-11 73.6 62 61.3
CDE08G0361 Ceratophyllum demersum HOM05D004450 ORTHO05D005491 9.2e-11 70.9 64 56.2
PGR042G3086 Punica granatum HOM05D004450 ORTHO05D005491 1.2e-10 70.5 67 58.2
BcaB03g11896 Brassica carinata HOM05D004450 ORTHO05D005491 4.6e-10 68.6 58 60.3
Zm00001eb140390 Zea mays HOM05D004450 ORTHO05D005491 4.6e-10 68.6 58 58.6
AUR62022339 Chenopodium quinoa HOM05D004450 ORTHO05D005491 2.3e-09 66.2 66 51.5
BcaB03g14237 Brassica carinata HOM05D004450 ORTHO05D005491 5.1e-09 65.1 66 51.5
MBI05_g36570_MAGBIO Magnolia biondii HOM05D004450 ORTHO05D005491 6.6e-09 64.7 67 52.2
Sp1g19560 Schrenkiella parvula HOM05D004450 ORTHO05D005491 1.1e-08 63.9 66 50.0
Potri.005G170066 Populus trichocarpa HOM05D004450 ORTHO05D005491 3.6e-07 58.9 67 47.8
SEGI_12183 Sequoiadendron giganteum HOM05D001888 ORTHO05D001842 3.6e-07 58.9 86 37.2
SEGI_22593 Sequoiadendron giganteum HOM05D001888 ORTHO05D001842 3.6e-07 58.9 86 37.2
AT1G22060 Arabidopsis thaliana HOM05D004450 ORTHO05D005491 8.1e-07 57.8 67 46.3
Dinv38962 Davidia involucrata HOM05D001888 ORTHO05D001842 1.1e-06 57.4 58 50.0
Nn1g05249 Nelumbo nucifera HOM05D004450 ORTHO05D005491 1.4e-06 57.0 68 48.5
Phvul.007G069700 Phaseolus vulgaris HOM05D001888 ORTHO05D001842 1.8e-06 56.6 81 37.0
TWI60G0760 Tripterygium wilfordii HOM05D001888 ORTHO05D001842 1.8e-06 56.6 58 50.0
unitig_749.g13887 Utricularia gibba HOM05D004450 ORTHO05D005491 2.4e-06 56.2 65 44.6
Gohir.A12G257900 Gossypium hirsutum HOM05D001888 ORTHO05D001842 3.1e-06 55.8 63 46.0
THA.LOC104809399 Tarenaya hassleriana HOM05D001888 ORTHO05D001842 5.2e-06 55.1 59 45.8
TWI81G0663 Tripterygium wilfordii HOM05D001888 ORTHO05D001842 5.2e-06 55.1 57 49.1
Lsat_1_v5_gn_9_56001 Lactuca sativa HOM05D001888 ORTHO05D001842 6.8e-06 54.7 64 42.2
EL10Ac1g01695 Beta vulgaris HOM05D004450 ORTHO05D005491 8.9e-06 54.3 34 70.6
AUR62034367 Chenopodium quinoa HOM05D004450 ORTHO05D005491 8.9e-06 54.3 66 45.5
MD14G1099400 Malus domestica HOM05D001888 ORTHO05D001842 8.9e-06 54.3 68 39.7
QL12p018168 Quercus lobata HOM05D001888 ORTHO05D001842 8.9e-06 54.3 59 44.1


User provided reference genes

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