Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 0.0e+00 1566.6 767 100.0
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 3.5e-274 948.3 779 63.3
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 3.9e-273 944.9 767 63.5
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 1.1e-272 943.3 776 63.9
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 4.3e-272 941.4 767 63.4
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 2.6e-269 932.2 782 61.8
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 2.6e-269 932.2 782 61.8
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 1.3e-268 929.9 782 62.1
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 1.7e-268 929.5 775 62.1
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 4.2e-267 924.9 783 60.5
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 5.4e-267 924.5 781 61.6
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 7.1e-267 924.1 769 62.8
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 2.1e-266 922.5 785 61.7
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 1.9e-264 916.0 776 60.3
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 1.9e-264 916.0 780 60.9
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 2.5e-264 915.6 779 61.4
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 1.8e-262 909.4 784 60.7
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 2.4e-262 909.1 778 60.4
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 3.1e-262 908.7 782 60.1
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 4.0e-262 908.3 778 60.3
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 9.0e-262 907.1 791 59.3
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 2.6e-261 905.6 781 61.2
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 4.4e-261 904.8 760 62.4
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 2.9e-260 902.1 780 59.9
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 2.9e-260 902.1 780 59.9
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 6.4e-260 901.0 780 59.9
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 8.4e-260 900.6 780 59.7
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 3.2e-259 898.7 787 60.0
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 3.2e-259 898.7 794 59.4
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 4.2e-259 898.3 787 59.8
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 5.4e-259 897.9 805 58.4
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 3.5e-258 895.2 784 59.7
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 7.9e-258 894.0 779 59.3
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 5.1e-257 891.3 786 59.3
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 2.5e-256 889.0 773 60.2
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 3.3e-256 888.6 785 59.1
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 3.3e-256 888.6 769 60.5
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 5.6e-256 887.9 781 59.2
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 7.4e-256 887.5 783 58.0
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 1.6e-255 886.3 774 58.9
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 3.6e-255 885.2 768 59.5
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 6.2e-255 884.4 779 59.4
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 1.4e-254 883.2 783 59.3
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 2.4e-254 882.5 765 59.5
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 2.4e-254 882.5 780 59.0
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 3.1e-254 882.1 780 58.5
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 4.0e-254 881.7 759 59.9
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 9.0e-254 880.6 768 59.4
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 1.2e-253 880.2 768 59.2
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 2.6e-253 879.0 779 59.2
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 2.6e-253 879.0 769 59.8
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 5.8e-253 877.9 772 59.6
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 9.9e-253 877.1 758 59.9
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 1.7e-252 876.3 778 58.5
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 1.7e-252 876.3 772 59.6
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 8.4e-252 874.0 782 57.7
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 1.1e-251 873.6 766 59.4
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 1.4e-251 873.2 780 59.2
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.9e-251 872.8 768 59.2
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 1.9e-251 872.8 781 58.0
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 3.2e-251 872.1 760 59.3
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 1.2e-250 870.2 769 59.4
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.6e-250 869.8 768 59.2
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 2.1e-250 869.4 768 58.3
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 4.6e-250 868.2 772 59.7
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 5.6e-248 861.3 768 58.9
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 7.4e-248 860.9 782 57.8
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 2.1e-247 859.4 783 58.7
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 3.7e-247 858.6 781 59.2
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 3.7e-247 858.6 769 58.8
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 3.7e-247 858.6 779 57.6
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 8.1e-247 857.4 768 58.7
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 1.8e-246 856.3 776 57.3
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 3.1e-246 855.5 778 57.3
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 2.6e-245 852.4 772 58.0
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 4.5e-245 851.7 761 59.3
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 7.6e-245 850.9 821 55.4
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 7.6e-245 850.9 812 57.3
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 2.2e-244 849.4 774 58.4
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 2.5e-243 845.9 771 58.8
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 3.2e-243 845.5 772 57.9
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 3.2e-243 845.5 767 58.7
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 4.2e-243 845.1 768 58.2
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 1.2e-242 843.6 770 57.5
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 2.7e-242 842.4 781 57.9
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 3.5e-242 842.0 772 58.0
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 1.3e-241 840.1 728 59.8
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 6.7e-241 837.8 788 57.6
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 1.9e-240 836.3 768 57.7
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 1.9e-240 836.3 770 56.9
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 7.4e-240 834.3 770 57.0
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 9.6e-240 833.9 769 57.0
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 6.3e-239 831.2 773 56.5
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 1.4e-238 830.1 772 57.4
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 2.4e-238 829.3 795 56.4
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 9.0e-238 827.4 765 57.6
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 2.6e-237 825.9 769 57.5
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 5.1e-233 811.6 779 56.1
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 6.7e-233 811.2 759 56.1
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 8.7e-233 810.8 761 56.2
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 3.3e-232 808.9 761 56.2
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 4.1e-230 802.0 768 56.0
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 4.1e-230 802.0 784 54.0
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 9.0e-230 800.8 768 55.1
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 1.2e-229 800.4 772 55.7
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 2.0e-229 799.7 768 55.7
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 2.6e-229 799.3 765 55.8
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 3.4e-229 798.9 758 57.4
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 3.4e-229 798.9 788 55.1
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 7.7e-229 797.7 760 56.1
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 1.0e-228 797.3 802 55.0
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 1.0e-228 797.3 759 55.3
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 1.0e-228 797.3 792 54.5
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 6.5e-228 794.7 777 53.5
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 1.9e-227 793.1 735 57.7
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 5.5e-227 791.6 731 56.8
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.6e-226 790.0 771 54.3
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 7.9e-226 787.7 771 54.3
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 9.7e-224 780.8 763 54.8
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 1.0e-220 770.8 762 54.1
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 1.3e-220 770.4 772 52.6
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 6.1e-218 761.5 782 52.3
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.3e-217 759.6 768 52.2
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 5.1e-217 758.4 777 52.4
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 2.6e-216 756.1 727 55.7
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 9.7e-216 754.2 769 53.8
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 2.8e-215 752.7 785 54.6
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 7.7e-213 744.6 786 52.2
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 2.4e-206 723.0 769 51.5
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 3.5e-205 719.2 768 51.8
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 7.7e-205 718.0 850 48.7
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 2.9e-204 716.1 777 51.9
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 1.1e-203 714.1 771 52.0
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 1.5e-203 713.8 769 52.1
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 9.4e-203 711.1 704 55.1
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.8e-185 653.7 738 49.9
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 4.4e-184 649.0 679 52.7
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 2.2e-183 646.7 695 51.9
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 7.1e-166 588.6 777 43.9
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 1.9e-155 553.9 781 43.0
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 5.6e-155 552.4 728 42.3
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 9.6e-155 551.6 754 41.5
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 8.1e-154 548.5 772 42.4
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 4.6e-149 532.7 768 41.4
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 3.8e-143 513.1 437 60.4
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 1.5e-139 501.1 779 39.0
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 1.7e-135 487.6 394 64.0
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 2.2e-135 487.3 394 64.0
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 5.8e-128 462.6 390 61.0
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 4.5e-120 436.4 420 56.4
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 5.0e-119 433.0 562 43.1
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 1.1e-113 415.2 279 69.9
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.9e-102 377.9 231 74.9
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 8.8e-100 369.0 434 45.4
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 5.0e-95 353.2 472 44.9
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 1.1e-89 335.5 753 33.2
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.5e-62 244.6 273 48.0
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 2.1e-61 241.5 762 26.9
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 2.1e-53 214.9 297 42.8
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 2.8e-45 188.0 185 53.0
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.4e-36 159.1 83 80.7
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 1.4e-33 149.1 152 53.9
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 4.2e-25 120.9 67 79.1
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 6.0e-24 117.1 149 46.3
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.8e-21 108.2 176 38.1
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.1e-20 104.8 142 40.8
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 1.4e-12 79.3 101 40.6
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 8.4e-10 70.1 46 69.6
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 1.1e-09 69.7 66 51.5
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 9.3e-09 66.6 39 71.8
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 2.5e-06 58.5 73 38.4


User provided reference genes

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