Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 1.5e-144 516.2 262 100.0
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 4.8e-122 441.4 261 86.6
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 9.0e-121 437.2 261 85.8
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 2.0e-120 436.0 261 86.6
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 2.6e-120 435.6 261 85.1
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 2.6e-120 435.6 259 86.5
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 4.5e-120 434.9 261 85.1
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 5.8e-120 434.5 262 86.6
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 2.2e-119 432.6 260 84.6
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 3.8e-119 431.8 261 84.3
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 3.8e-119 431.8 261 84.7
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 3.8e-119 431.8 260 85.8
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 4.9e-119 431.4 261 84.7
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 6.4e-119 431.0 261 84.7
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 6.4e-119 431.0 261 84.7
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 1.1e-118 430.3 260 84.2
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 1.9e-118 429.5 261 84.7
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 3.2e-118 428.7 261 83.9
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 4.2e-118 428.3 261 84.3
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 4.2e-118 428.3 260 85.4
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 5.4e-118 427.9 259 85.3
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 9.3e-118 427.2 261 84.7
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 1.2e-117 426.8 260 83.8
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 2.1e-117 426.0 260 83.8
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.7e-117 425.6 260 83.5
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 2.7e-117 425.6 261 84.3
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 3.5e-117 425.2 262 84.0
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 6.0e-117 424.5 260 85.4
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.0e-116 423.7 261 83.9
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 1.3e-116 423.3 260 83.5
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 2.3e-116 422.5 261 82.8
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 2.3e-116 422.5 260 83.5
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 3.0e-116 422.2 263 82.5
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 3.0e-116 422.2 259 82.6
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 3.9e-116 421.8 259 84.6
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 3.9e-116 421.8 260 83.5
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 5.1e-116 421.4 260 82.7
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 6.7e-116 421.0 258 83.7
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.1e-115 420.2 262 82.4
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 1.5e-115 419.9 260 82.3
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 1.9e-115 419.5 264 82.2
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 3.3e-115 418.7 259 83.8
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 7.4e-115 417.5 250 86.4
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 7.4e-115 417.5 264 81.1
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 1.3e-114 416.8 259 80.7
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 2.8e-114 415.6 261 82.8
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 1.1e-113 413.7 263 84.0
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 1.8e-113 412.9 268 81.0
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 3.1e-113 412.1 261 81.6
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 4.0e-113 411.8 254 83.9
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 5.3e-113 411.4 258 81.8
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 5.3e-113 411.4 258 81.8
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 5.3e-113 411.4 268 82.1
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.2e-112 410.2 263 80.2
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.5e-112 409.8 259 79.9
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 3.4e-112 408.7 260 80.8
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 5.8e-112 407.9 261 81.2
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 5.8e-112 407.9 262 81.3
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 5.8e-112 407.9 256 82.4
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 7.6e-112 407.5 260 80.0
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 1.7e-111 406.4 259 81.1
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 2.2e-111 406.0 261 81.2
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 2.9e-111 405.6 260 81.2
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 3.8e-111 405.2 260 81.2
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 4.9e-111 404.8 260 80.8
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 4.9e-111 404.8 258 81.0
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 6.4e-111 404.4 268 79.5
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 6.4e-111 404.4 260 80.8
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 8.4e-111 404.1 260 80.8
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.1e-110 403.7 260 80.4
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 1.1e-110 403.7 263 80.2
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 1.4e-110 403.3 286 74.5
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.4e-110 403.3 260 80.0
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 1.4e-110 403.3 264 79.9
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 1.4e-110 403.3 260 79.2
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 1.9e-110 402.9 260 79.6
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 2.5e-110 402.5 289 74.0
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 2.5e-110 402.5 260 79.2
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 4.2e-110 401.7 259 80.3
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 7.1e-110 401.0 261 80.1
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 9.3e-110 400.6 260 79.6
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.2e-109 400.2 250 82.4
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 1.2e-109 400.2 261 80.8
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 7.9e-109 397.5 250 81.6
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 7.9e-109 397.5 262 80.2
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 5.1e-108 394.8 261 78.5
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 6.7e-108 394.4 254 79.1
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 8.7e-108 394.0 262 78.6
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 7.4e-107 391.0 260 78.5
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 1.3e-106 390.2 262 79.0
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 2.8e-106 389.0 259 78.0
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 4.8e-106 388.3 251 79.7
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 8.2e-106 387.5 261 77.0
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 2.6e-104 382.5 304 69.1
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.3e-103 380.2 261 77.4
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 2.9e-103 379.0 284 73.9
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 1.1e-102 377.1 313 66.5
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 4.2e-102 375.2 249 78.3
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 5.5e-102 374.8 232 82.8
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 7.1e-102 374.4 274 74.8
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 9.3e-102 374.0 260 76.5
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 2.1e-101 372.9 262 74.8
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 2.1e-101 372.9 262 75.6
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 6.0e-101 371.3 258 74.8
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 6.0e-101 371.3 251 77.7
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 1.3e-100 370.2 265 73.6
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 1.3e-100 370.2 256 76.6
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 2.3e-100 369.4 262 73.7
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 5.7e-99 364.8 262 72.9
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 9.7e-99 364.0 259 70.3
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 6.3e-98 361.3 262 73.7
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 2.4e-97 359.4 263 72.6
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 4.1e-97 358.6 262 72.1
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 2.0e-96 356.3 262 71.8
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 2.0e-96 356.3 262 71.0
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 2.0e-96 356.3 262 72.1
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 3.4e-96 355.5 262 71.4
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 4.5e-96 355.1 225 79.6
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 1.7e-95 353.2 261 69.0
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 2.2e-95 352.8 262 70.6
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 2.9e-95 352.4 263 71.1
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 5.0e-95 351.7 257 72.4
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 5.0e-95 351.7 257 72.4
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 1.4e-94 350.1 262 69.8
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 1.4e-94 350.1 258 73.6
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 1.9e-94 349.7 263 70.3
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 2.5e-94 349.4 259 71.8
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 1.2e-93 347.1 262 71.4
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 2.7e-93 345.9 235 76.6
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 6.1e-93 344.7 262 70.2
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 1.4e-92 343.6 269 70.6
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 3.0e-92 342.4 262 71.0
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 5.1e-92 341.7 281 65.8
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 5.7e-91 338.2 257 70.0
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 7.4e-91 337.8 256 69.5
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 3.7e-90 335.5 253 71.1
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 3.7e-90 335.5 264 68.9
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 9.1e-89 330.9 259 67.6
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 1.7e-87 326.6 261 68.6
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 1.1e-86 323.9 260 66.9
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 4.2e-86 322.0 263 66.9
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 2.7e-85 319.3 262 65.6
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 8.8e-84 314.3 263 65.4
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 2.6e-83 312.8 199 81.9
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 1.7e-82 310.1 206 80.6
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 4.8e-82 308.5 197 80.7
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 6.3e-82 308.1 263 64.3
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 1.2e-80 303.9 262 63.0
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 5.0e-79 298.5 240 68.8
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 3.6e-69 265.8 191 73.8
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 8.8e-68 261.2 144 89.6
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.7e-61 239.6 167 73.7
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 2.2e-42 176.8 212 50.5
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 3.9e-39 166.0 239 43.9
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 2.5e-38 163.3 184 51.6
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 3.3e-38 162.9 280 40.7
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 1.7e-34 150.6 117 69.2
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 1.7e-34 150.6 106 74.5
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 3.1e-28 129.8 93 72.0
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 5.2e-28 129.0 74 90.5
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 2.7e-24 116.7 230 37.8
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 4.6e-24 115.9 76 78.9
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 1.4e-17 94.4 186 34.9
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 9.3e-17 91.7 88 55.7
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 1.7e-15 87.4 177 35.0
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.1e-12 78.2 40 90.0
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 6.9e-12 75.5 41 78.0
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 7.6e-11 72.0 41 78.0
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 2.2e-10 70.5 42 73.8
SHI42769 Sapria himalayana HOM05D003984 ORTHO05D004740 2.2e-10 70.5 126 41.3
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 1.0e-07 61.6 137 34.3
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 6.6e-07 58.9 85 35.3


User provided reference genes

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