Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 4.6e-208 727.6 365 100.0
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 3.9e-138 495.4 366 70.5
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 6.6e-138 494.6 368 69.8
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 1.5e-137 493.4 364 70.6
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 5.6e-137 491.5 367 70.6
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 7.3e-137 491.1 366 69.1
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.2e-136 490.3 366 68.9
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 1.6e-136 490.0 370 70.3
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 6.8e-135 484.6 366 69.9
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 3.7e-133 478.8 365 68.2
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 3.7e-133 478.8 366 67.5
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 3.7e-133 478.8 362 69.3
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 4.9e-133 478.4 366 67.5
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 1.4e-132 476.9 367 67.8
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 2.4e-132 476.1 371 67.1
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 9.2e-132 474.2 368 67.7
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 9.2e-132 474.2 367 68.7
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 1.2e-131 473.8 364 67.9
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 6.0e-131 471.5 363 67.2
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.0e-130 470.7 367 67.8
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.0e-130 470.7 367 67.8
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 1.3e-130 470.3 367 68.1
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 3.9e-130 468.8 363 66.7
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 6.6e-130 468.0 367 67.6
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 1.5e-129 466.8 369 67.2
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 3.3e-129 465.7 370 68.4
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 3.3e-129 465.7 369 68.0
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 5.6e-129 464.9 367 67.3
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 5.6e-129 464.9 368 65.2
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 7.3e-129 464.5 369 67.2
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 9.6e-129 464.2 369 66.4
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 1.2e-128 463.8 361 67.9
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 2.8e-128 462.6 367 66.2
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 3.6e-128 462.2 363 67.5
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 6.2e-128 461.5 366 64.5
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 8.1e-128 461.1 389 63.8
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 2.4e-127 459.5 366 67.8
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 2.4e-127 459.5 362 66.3
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 6.4e-125 451.4 368 64.4
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 6.4e-125 451.4 366 64.8
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 8.4e-125 451.1 368 64.7
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 3.2e-124 449.1 353 66.0
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 5.4e-124 448.4 368 64.1
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 9.3e-124 447.6 366 64.2
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 9.3e-124 447.6 367 65.7
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 6.0e-123 444.9 362 63.8
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 7.8e-123 444.5 363 63.9
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 1.0e-122 444.1 368 62.8
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.3e-122 443.7 380 62.4
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.3e-122 443.0 390 59.5
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 1.1e-121 440.7 363 64.2
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 1.5e-121 440.3 365 63.3
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 3.3e-121 439.1 365 64.1
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 4.3e-121 438.7 430 57.2
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 5.6e-121 438.3 362 63.5
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 9.6e-121 437.6 367 62.9
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 1.6e-120 436.8 371 62.3
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 4.8e-120 435.3 355 65.1
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 4.8e-120 435.3 371 62.3
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 1.1e-119 434.1 363 58.7
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 1.4e-119 433.7 361 57.6
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 2.4e-119 433.0 330 68.2
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 3.1e-119 432.6 360 62.8
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 4.0e-119 432.2 367 62.7
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 4.0e-119 432.2 363 63.9
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 6.9e-119 431.4 363 62.0
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 6.9e-119 431.4 360 63.1
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 9.0e-119 431.0 369 63.1
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.2e-118 430.6 330 67.3
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 1.5e-118 430.3 356 62.9
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 2.0e-118 429.9 365 63.8
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 3.4e-118 429.1 356 63.8
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 3.4e-118 429.1 365 61.9
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 3.4e-118 429.1 370 62.2
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 4.4e-118 428.7 360 58.6
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 5.8e-118 428.3 335 67.2
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 7.6e-118 427.9 330 67.0
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 6.4e-117 424.9 330 66.4
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 1.1e-116 424.1 344 64.8
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 1.4e-116 423.7 443 53.5
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 4.6e-115 418.7 348 63.2
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 6.0e-115 418.3 329 61.4
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 6.2e-112 408.3 332 65.1
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 8.1e-112 407.9 327 67.0
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 9.0e-111 404.4 329 62.3
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 9.0e-111 404.4 367 59.1
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 1.2e-110 404.1 334 64.1
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 5.8e-110 401.7 360 59.2
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 7.1e-108 394.8 365 58.1
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 2.7e-107 392.9 363 57.6
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 3.5e-107 392.5 363 57.0
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 4.6e-107 392.1 363 53.4
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 1.5e-105 387.1 332 62.0
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 3.7e-104 382.5 365 58.1
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 4.8e-104 382.1 326 63.8
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 4.8e-104 382.1 369 57.7
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 8.1e-104 381.3 331 61.0
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 8.1e-104 381.3 363 54.5
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 1.1e-103 380.9 333 61.3
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 1.8e-103 380.2 333 61.0
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 4.0e-103 379.0 264 65.9
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 5.3e-103 378.6 333 61.0
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 1.2e-102 377.5 329 59.9
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 2.6e-102 376.3 329 63.5
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 4.5e-102 375.6 363 53.4
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 2.9e-101 372.9 360 53.6
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 8.4e-101 371.3 372 56.2
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 8.4e-101 371.3 367 54.2
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 3.2e-100 369.4 364 54.4
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 1.6e-99 367.1 364 53.3
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 2.7e-99 366.3 413 48.7
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 6.0e-99 365.2 301 66.1
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 7.9e-99 364.8 361 54.6
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 5.1e-98 362.1 349 55.3
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 1.1e-97 360.9 352 54.8
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 1.3e-96 357.5 349 54.7
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 3.7e-96 355.9 356 48.6
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 2.4e-95 353.2 300 63.3
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 5.3e-95 352.1 277 61.7
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 3.8e-93 345.9 355 53.0
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 9.3e-92 341.3 301 62.1
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 8.7e-90 334.7 355 56.3
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 7.4e-89 331.6 236 63.1
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 1.6e-88 330.5 337 56.1
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 2.2e-88 330.1 363 52.6
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 4.1e-87 325.9 302 60.6
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 1.2e-86 324.3 222 64.0
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 4.5e-86 322.4 288 55.9
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 4.5e-86 322.4 291 61.9
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 4.5e-86 322.4 363 49.6
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 5.0e-85 318.9 276 58.0
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 6.5e-85 318.5 188 72.9
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 1.4e-84 317.4 336 46.1
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 5.5e-84 315.5 331 49.5
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 1.8e-82 310.5 364 51.6
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 6.7e-82 308.5 340 50.0
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.8e-79 300.4 332 51.8
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 6.5e-77 292.0 332 46.4
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 5.5e-76 288.9 333 50.2
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 1.4e-74 284.3 363 44.4
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 1.4e-74 284.3 341 49.0
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 1.1e-73 281.2 342 50.0
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 1.5e-73 280.8 338 49.1
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 1.5e-73 280.8 236 54.2
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 1.3e-72 277.7 373 47.2
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 3.7e-72 276.2 337 48.4
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 1.1e-71 274.6 334 49.1
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 5.3e-71 272.3 332 49.1
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 9.1e-71 271.6 332 47.9
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 1.2e-70 271.2 337 49.3
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 1.6e-70 270.8 338 50.3
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 5.0e-69 265.8 341 47.2
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 8.5e-69 265.0 340 46.2
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 1.6e-67 260.8 350 44.6
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.3e-64 251.1 204 58.8
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 5.5e-60 235.7 220 47.3
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 1.2e-54 218.0 329 43.8
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 2.0e-54 217.2 333 43.8
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 9.4e-52 208.4 109 84.4
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 1.6e-51 207.6 323 40.9
PRCOL_00005356 Prasinoderma coloniale HOM05D003920 ORTHO05D004877 3.6e-51 206.5 377 38.5
Nitab4.5_0003190g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.8e-50 204.1 163 60.1
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 2.6e-49 200.3 110 81.8
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.5e-41 174.5 93 81.7
TPR.G31394 Trifolium pratense HOM05D002628 ORTHO05D002785 1.4e-15 88.2 102 38.2
Cc02_g27780 Coffea canephora HOM05D003920 ORTHO05D017698 1.9e-12 77.8 43 86.0
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 1.9e-12 77.8 38 81.6
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 3.3e-12 77.0 48 66.7
BolC8t49779H Brassica oleracea HOM05D003920 ORTHO05D017698 1.1e-10 72.0 40 80.0
BraA08t34788Z Brassica rapa HOM05D003920 ORTHO05D017698 1.1e-10 72.0 40 80.0
QL04p005704 Quercus lobata HOM05D003920 ORTHO05D004877 1.4e-10 71.6 88 53.4
BolC8t48153H Brassica oleracea HOM05D003920 ORTHO05D017698 3.1e-10 70.5 44 72.7
MBI17_g06171_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D017698 6.8e-10 69.3 82 51.2
C08p21400 Brassica napus HOM05D003920 ORTHO05D017698 8.4e-08 62.4 50 62.0
QL05p013448 Quercus lobata HOM05D001342 ORTHO05D017698 8.4e-08 62.4 45 66.7
FAN10G2408 Fragaria x ananassa HOM05D003920 ORTHO05D017698 2.4e-07 60.8 48 64.6
QL93p2025_0050 Quercus lobata HOM05D003920 ORTHO05D337666 7.1e-07 59.3 38 71.1


User provided reference genes

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