Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2150 Punica granatum HOM05D002529 ORTHO05D002664 8.3e-91 337.0 173 100.0
PGR042G1603 Punica granatum HOM05D002529 ORTHO05D002664 4.6e-89 331.3 173 98.3
Manes.08G120700 Manihot esculenta HOM05D002529 ORTHO05D002664 4.0e-16 89.0 85 51.8
Ciclev10002511m.g Citrus clementina HOM05D002529 ORTHO05D002664 6.8e-16 88.2 84 50.0
Sed0025735 Sechium edule HOM05D002529 ORTHO05D002664 8.8e-16 87.8 81 50.6
ClCG11G014280 Citrullus lanatus HOM05D002529 ORTHO05D002664 3.4e-15 85.9 83 48.2
CiPaw.08G178400 Carya illinoinensis HOM05D002529 ORTHO05D002664 4.4e-15 85.5 84 47.6
QL08p059718 Quercus lobata HOM05D002529 ORTHO05D002664 4.4e-15 85.5 83 50.6
Eucgr.H04397 Eucalyptus grandis HOM05D002529 ORTHO05D002664 7.5e-15 84.7 84 48.8
MELO3C003557.2 Cucumis melo HOM05D002529 ORTHO05D002664 2.2e-14 83.2 83 45.8
CiPaw.07G007900 Carya illinoinensis HOM05D002529 ORTHO05D002664 2.8e-14 82.8 84 47.6
PGR042G2960 Punica granatum HOM05D002529 ORTHO05D002664 3.7e-14 82.4 118 45.8
Prupe.6G025700 Prunus persica HOM05D002529 ORTHO05D002664 6.3e-14 81.6 87 49.4
Potri.013G035000 Populus trichocarpa HOM05D002529 ORTHO05D002664 8.3e-14 81.3 83 47.0
ClCG05G009860 Citrullus lanatus HOM05D002529 ORTHO05D002664 1.1e-13 80.9 81 48.1
MD03G1029600 Malus domestica HOM05D002529 ORTHO05D002664 1.1e-13 80.9 87 48.3
TWI12G0397 Tripterygium wilfordii HOM05D002529 ORTHO05D002664 1.1e-13 80.9 83 48.2
TWI12G0415 Tripterygium wilfordii HOM05D000460 ORTHO05D000333 1.1e-13 80.9 83 48.2
CSS0013639 Camellia sinensis var. sinensis HOM05D002529 ORTHO05D002664 1.4e-13 80.5 81 50.6
CsaV3_3G047670 Cucumis sativus L. HOM05D002529 ORTHO05D002664 1.4e-13 80.5 83 45.8
Lj4g0005583 Lotus japonicus HOM05D002529 ORTHO05D002664 1.4e-13 80.5 83 49.4
Atru.chr2.663 Acer truncatum HOM05D002529 ORTHO05D002664 1.8e-13 80.1 79 48.1
Rhsim05G0150200 Rhododendron simsii HOM05D002529 ORTHO05D002664 2.4e-13 79.7 83 47.0
MD12G1235200 Malus domestica HOM05D002529 ORTHO05D002664 3.1e-13 79.3 87 47.1
Prupe.6G337800 Prunus persica HOM05D002529 ORTHO05D002664 3.1e-13 79.3 87 48.3
TAR636G3415 Trochodendron aralioides HOM05D002529 ORTHO05D002664 5.4e-13 78.6 87 48.3
GSVIVG01021882001 Vitis vinifera HOM05D002529 ORTHO05D002664 5.4e-13 78.6 81 49.4
Duzib128G1976 Durio zibethinus HOM05D002529 ORTHO05D002664 7.0e-13 78.2 84 50.0
MD04G1217800 Malus domestica HOM05D002529 ORTHO05D002664 9.1e-13 77.8 87 46.0
DCAR_018312 Daucus carota HOM05D002529 ORTHO05D002664 1.2e-12 77.4 84 47.6
vmacro19828 Vaccinium macrocarpon HOM05D002529 ORTHO05D002664 1.6e-12 77.0 83 44.6
Dinv05119 Davidia involucrata HOM05D002529 ORTHO05D002664 2.0e-12 76.6 81 46.9
Dinv02599 Davidia involucrata HOM05D002529 ORTHO05D002664 4.5e-12 75.5 81 49.4
Nn1g02343 Nelumbo nucifera HOM05D002529 ORTHO05D002664 4.5e-12 75.5 86 43.0
ECA238G0509 Erigeron canadensis HOM05D002529 ORTHO05D002664 5.9e-12 75.1 87 40.2
FvH4_5g30310 Fragaria vesca HOM05D002529 ORTHO05D002664 5.9e-12 75.1 87 42.5
Lj1g0004297 Lotus japonicus HOM05D002529 ORTHO05D002664 5.9e-12 75.1 87 48.3
Phvul.003G288900 Phaseolus vulgaris HOM05D002529 ORTHO05D002664 5.9e-12 75.1 87 46.0
Gohir.A11G298500 Gossypium hirsutum HOM05D002529 ORTHO05D002664 7.7e-12 74.7 84 45.2
Lsat_1_v5_gn_1_56180 Lactuca sativa HOM05D002529 ORTHO05D002664 7.7e-12 74.7 87 40.2
Lalb_Chr04g0264001 Lupinus albus HOM05D002529 ORTHO05D002664 7.7e-12 74.7 83 44.6
Sabra13G0034100 Salix brachista HOM05D004408 ORTHO05D005486 7.7e-12 74.7 83 43.4
Lsat_1_v5_gn_2_115920 Lactuca sativa HOM05D002529 ORTHO05D002664 1.0e-11 74.3 89 39.3
Nn6g34079 Nelumbo nucifera HOM05D002529 ORTHO05D002664 1.0e-11 74.3 86 41.9
ATR0697G145 Amborella trichopoda HOM05D002529 ORTHO05D002664 1.3e-11 73.9 85 44.7
FAN13G2107 Fragaria x ananassa HOM05D002529 ORTHO05D002664 1.3e-11 73.9 87 42.5
Glyma.19G009300 Glycine max HOM05D002529 ORTHO05D002664 1.3e-11 73.9 87 44.8
Gohir.D11G313300 Gossypium hirsutum HOM05D002529 ORTHO05D002664 1.3e-11 73.9 84 45.2
Potri.005G047901 Populus trichocarpa HOM05D002529 ORTHO05D002664 1.3e-11 73.9 83 43.4
Solyc01g096760.3 Solanum lycopersicum HOM05D002529 ORTHO05D002664 1.3e-11 73.9 81 43.2
Sopen01g040470 Solanum pennellii HOM05D002529 ORTHO05D002664 1.3e-11 73.9 81 43.2
CANSAT54G0996 Cannabis sativa HOM05D002529 ORTHO05D002664 1.7e-11 73.6 95 43.2
CAN.G134.40 Capsicum annuum HOM05D002529 ORTHO05D002664 1.7e-11 73.6 81 43.2
Nn5g28120 Nelumbo nucifera HOM05D002529 ORTHO05D002664 1.7e-11 73.6 87 42.5
Sabra05G0043300 Salix brachista HOM05D002529 ORTHO05D002664 1.7e-11 73.6 83 42.2
HanXRQChr07g0200741 Helianthus annuus HOM05D002529 ORTHO05D002664 2.2e-11 73.2 87 40.2
Ca_23953_v3 Cicer arietinum L. HOM05D002529 ORTHO05D002664 2.9e-11 72.8 87 42.5
Ca_23959_v3 Cicer arietinum L. HOM05D002529 ORTHO05D002664 2.9e-11 72.8 87 42.5
Gorai.007G344500 Gossypium raimondii HOM05D002529 ORTHO05D002664 2.9e-11 72.8 84 45.2
VMungo0251G2818 Vigna mungo HOM05D002529 ORTHO05D002664 2.9e-11 72.8 87 44.8
PGSC0003DMG400027508 Solanum tuberosum HOM05D002529 ORTHO05D002664 3.8e-11 72.4 81 43.2
Duzib177G0239 Durio zibethinus HOM05D000460 ORTHO05D000333 5.0e-11 72.0 84 47.6
Glyma.13G169100 Glycine max HOM05D002529 ORTHO05D002664 5.0e-11 72.0 87 44.8
Sed0014372 Sechium edule HOM05D002529 ORTHO05D002664 5.0e-11 72.0 81 43.2
unitig_578.g16363 Utricularia gibba HOM05D000550 ORTHO05D000400 6.5e-11 71.6 99 42.4
ATR0730G133 Amborella trichopoda HOM05D002529 ORTHO05D002664 8.5e-11 71.2 92 41.3
Os08g0508600 Oryza sativa ssp. japonica HOM05D002529 ORTHO05D002664 8.5e-11 71.2 68 48.5
RcHm_v2.0_Chr5g0076411 Rosa chinensis HOM05D002529 ORTHO05D002664 8.5e-11 71.2 87 41.4
Cpa.g.sc114.63 Carica papaya HOM05D002529 ORTHO05D002664 1.1e-10 70.9 83 44.6
FAN08G0687 Fragaria x ananassa HOM05D002529 ORTHO05D002664 1.1e-10 70.9 87 40.2
MD11G1033000 Malus domestica HOM05D002529 ORTHO05D002664 1.1e-10 70.9 93 43.0
Aqoxy3G00616 Aquilegia oxysepala HOM05D002529 ORTHO05D002664 1.5e-10 70.5 70 50.0
VMungo1383G2706 Vigna mungo HOM05D002529 ORTHO05D002664 1.5e-10 70.5 87 43.7
arahy.Tifrunner.gnm1.ann1.2EE7P6 Arachis hypogaea HOM05D002529 ORTHO05D002664 1.9e-10 70.1 87 42.5
arahy.Tifrunner.gnm1.ann1.418MG4 Arachis hypogaea HOM05D002529 ORTHO05D002664 1.9e-10 70.1 87 42.5
arahy.Tifrunner.gnm1.ann1.G3F6T9 Arachis hypogaea HOM05D002529 ORTHO05D002664 1.9e-10 70.1 87 42.5
arahy.Tifrunner.gnm1.ann1.X9ULGB Arachis hypogaea HOM05D002529 ORTHO05D002664 1.9e-10 70.1 98 40.8
COL.COLO4_15255 Corchorus olitorius HOM05D002529 ORTHO05D002664 1.9e-10 70.1 83 44.6
FAN18G2811 Fragaria x ananassa HOM05D002529 ORTHO05D002664 1.9e-10 70.1 62 50.0
Actinidia33839 Actinidia chinensis HOM05D002529 ORTHO05D002664 2.5e-10 69.7 68 50.0
Oeu006310.1 Olea europaea HOM05D002529 ORTHO05D002664 2.5e-10 69.7 81 45.7
Psat2g156040 Pisum sativum HOM05D002529 ORTHO05D002664 3.2e-10 69.3 87 40.2
RcHm_v2.0_Chr1g0334081 Rosa chinensis HOM05D002529 ORTHO05D002664 3.2e-10 69.3 87 41.4
TPR.G20395 Trifolium pratense HOM05D002529 ORTHO05D002664 3.2e-10 69.3 76 42.1
Glyma.18G147100 Glycine max HOM05D002529 ORTHO05D002664 4.2e-10 68.9 87 42.5
Aqoxy1G03767 Aquilegia oxysepala HOM05D002529 ORTHO05D002664 5.5e-10 68.6 70 48.6
PSO210G7021 Papaver somniferum HOM05D002529 ORTHO05D002664 7.2e-10 68.2 108 34.3
Aqoxy2G03402 Aquilegia oxysepala HOM05D002529 ORTHO05D002664 9.4e-10 67.8 82 40.2
MSTRG.5850 Avicennia marina HOM05D002529 ORTHO05D002664 9.4e-10 67.8 81 44.4
CDE08G0620 Ceratophyllum demersum HOM05D007486 ORTHO05D003673 9.4e-10 67.8 83 39.8
Peaxi162Scf00220g00009 Petunia axillaris HOM05D002529 ORTHO05D002664 9.4e-10 67.8 55 56.4
Pp3c3_31460 Physcomitrium patens HOM05D002529 ORTHO05D002664 9.4e-10 67.8 63 47.6
CDE08G1586 Ceratophyllum demersum HOM05D002529 ORTHO05D002664 1.2e-09 67.4 82 40.2
CDE02G3900 Ceratophyllum demersum HOM05D002529 ORTHO05D002664 1.6e-09 67.0 84 36.9
SEGI_20714 Sequoiadendron giganteum HOM05D002529 ORTHO05D002664 1.6e-09 67.0 60 51.7
Cfa007075 Carpinus fangiana HOM05D001516 ORTHO05D001357 2.1e-09 66.6 72 45.8
ECA236G0123 Erigeron canadensis HOM05D002529 ORTHO05D002664 2.1e-09 66.6 88 39.8
Potri.010G086800 Populus trichocarpa HOM05D002529 ORTHO05D002664 2.1e-09 66.6 78 43.6
arahy.Tifrunner.gnm1.ann1.2T97DK Arachis hypogaea HOM05D002529 ORTHO05D002664 2.7e-09 66.2 87 41.4
arahy.Tifrunner.gnm1.ann1.A0H8UL Arachis hypogaea HOM05D002529 ORTHO05D002664 2.7e-09 66.2 87 41.4
arahy.Tifrunner.gnm1.ann1.DGU1VQ Arachis hypogaea HOM05D002529 ORTHO05D002664 2.7e-09 66.2 87 41.4
arahy.Tifrunner.gnm1.ann1.EKEG73 Arachis hypogaea HOM05D002529 ORTHO05D002664 2.7e-09 66.2 87 41.4
Peaxi162Scf00220g00008 Petunia axillaris HOM05D002529 ORTHO05D002664 2.7e-09 66.2 66 47.0
MBI03_g47918_MAGBIO Magnolia biondii HOM05D002529 ORTHO05D002664 3.6e-09 65.9 82 40.2
Manes.15G029600 Manihot esculenta HOM05D002529 ORTHO05D002664 3.6e-09 65.9 79 40.5
PSO210G6081 Papaver somniferum HOM05D002529 ORTHO05D002664 3.6e-09 65.9 67 43.3
Prupe.1G015200 Prunus persica HOM05D002529 ORTHO05D002664 3.6e-09 65.9 87 35.6
Migut.J01026 Erythranthe guttata HOM05D002529 ORTHO05D002664 4.7e-09 65.5 82 42.7
Hma1.2p1_0083F.1_g042670 Hydrangea macrophylla HOM05D002529 ORTHO05D002664 6.1e-09 65.1 83 42.2
Sabra10G0056700 Salix brachista HOM05D002529 ORTHO05D002664 6.1e-09 65.1 78 43.6
SalBow5G5584 Salvia bowleyana HOM05D002529 ORTHO05D002664 6.1e-09 65.1 92 34.8
Oeu021565.1 Olea europaea HOM05D002529 ORTHO05D002664 8.0e-09 64.7 81 39.5
PSO832G3905 Papaver somniferum HOM05D002529 ORTHO05D002664 8.0e-09 64.7 67 41.8
SalBow5G1920 Salvia bowleyana HOM05D002529 ORTHO05D002664 8.0e-09 64.7 92 34.8
SMO351G0221 Selaginella moellendorffii HOM05D002529 ORTHO05D002664 8.0e-09 64.7 56 53.6
PSO761G0286 Papaver somniferum HOM05D002529 ORTHO05D002664 1.0e-08 64.3 82 36.6
Dinv14000 Davidia involucrata HOM05D002529 ORTHO05D002664 1.4e-08 63.9 57 49.1
Migut.L01786 Erythranthe guttata HOM05D002529 ORTHO05D002664 1.4e-08 63.9 81 40.7
Thecc.05G290400 Theobroma cacao HOM05D002529 ORTHO05D002664 1.4e-08 63.9 85 42.4
Duzib212G0919 Durio zibethinus HOM05D002529 ORTHO05D002664 1.8e-08 63.5 79 45.6
MD16G1195200 Malus domestica HOM05D002529 ORTHO05D002664 1.8e-08 63.5 74 39.2
Peaxi162Scf00071g00848 Petunia axillaris HOM05D002529 ORTHO05D002664 1.8e-08 63.5 57 50.9
Cpa.g.sc13.273 Carica papaya HOM05D002866 ORTHO05D008706 2.3e-08 63.2 80 41.2
Nitab4.5_0003586g0050 Nicotiana tabacum HOM05D002529 ORTHO05D002664 2.3e-08 63.2 67 44.8
Migut.G00316 Erythranthe guttata HOM05D002529 ORTHO05D002664 3.0e-08 62.8 82 41.5
arahy.Tifrunner.gnm1.ann1.C65CX3 Arachis hypogaea HOM05D002529 ORTHO05D002664 4.0e-08 62.4 69 44.9
Medtr8g043450 Medicago truncatula HOM05D002529 ORTHO05D002664 4.0e-08 62.4 81 39.5
Ciclev10006772m.g Citrus clementina HOM05D002529 ORTHO05D002664 5.2e-08 62.0 82 36.6
Cc03_g03880 Coffea canephora HOM05D002529 ORTHO05D002664 5.2e-08 62.0 72 44.4
CsaV3_3G013260 Cucumis sativus L. HOM05D003253 ORTHO05D002078 5.2e-08 62.0 78 39.7
Hund12122 Selenicereus undatus HOM05D002529 ORTHO05D002664 6.8e-08 61.6 74 40.5
SEGI_32869 Sequoiadendron giganteum HOM05D002529 ORTHO05D002664 6.8e-08 61.6 63 47.6
GSVIVG01017990001 Vitis vinifera HOM05D002529 ORTHO05D002664 6.8e-08 61.6 78 38.5
Thecc.04G233300 Theobroma cacao HOM05D002529 ORTHO05D002664 8.8e-08 61.2 79 41.8
Atru.chr4.2452 Acer truncatum HOM05D002529 ORTHO05D002664 1.2e-07 60.8 90 36.7
Actinidia36955 Actinidia chinensis HOM05D002529 ORTHO05D002664 1.2e-07 60.8 74 41.9
Sed0006923 Sechium edule HOM05D002529 ORTHO05D002664 1.2e-07 60.8 78 39.7
CSS0050505 Camellia sinensis var. sinensis HOM05D002529 ORTHO05D002664 1.5e-07 60.5 83 36.1
SGA_v2.0_scaffold31G12908 Striga asiatica HOM05D002529 ORTHO05D002664 1.5e-07 60.5 81 39.5
TWI09G0630 Tripterygium wilfordii HOM05D002529 ORTHO05D002664 1.5e-07 60.5 80 36.2
SGA_v2.0_scaffold522G52708 Striga asiatica HOM05D002529 ORTHO05D002664 2.0e-07 60.1 73 41.1
TAR365G0359 Trochodendron aralioides HOM05D000460 ORTHO05D000333 2.0e-07 60.1 66 43.9
Zm00001eb218130 Zea mays HOM05D002529 ORTHO05D002664 2.0e-07 60.1 59 45.8
MELO3C031694.2 Cucumis melo HOM05D002529 ORTHO05D002664 2.6e-07 59.7 78 38.5
SalBow3G3572 Salvia bowleyana HOM05D002529 ORTHO05D002664 2.6e-07 59.7 84 34.5
CSS0043802 Camellia sinensis var. sinensis HOM05D002529 ORTHO05D002664 3.4e-07 59.3 83 36.1
ClCG05G005150 Citrullus lanatus HOM05D002529 ORTHO05D002664 3.4e-07 59.3 82 37.8
RcHm_v2.0_Chr4g0416031 Rosa chinensis HOM05D002529 ORTHO05D002664 3.4e-07 59.3 115 33.0
Gohir.D09G055800 Gossypium hirsutum HOM05D002529 ORTHO05D002664 4.4e-07 58.9 72 43.1
Phvul.002G044900 Phaseolus vulgaris HOM05D002529 ORTHO05D002664 4.4e-07 58.9 79 38.0
Rhsim02G0021700 Rhododendron simsii HOM05D002529 ORTHO05D002664 4.4e-07 58.9 66 39.4
COL.COLO4_21488 Corchorus olitorius HOM05D002529 ORTHO05D002664 5.7e-07 58.5 82 37.8
CARHR185680 Cardamine hirsuta HOM05D002529 ORTHO05D002664 7.5e-07 58.2 58 46.6
CiPaw.01G167200 Carya illinoinensis HOM05D002529 ORTHO05D002664 7.5e-07 58.2 80 35.0
Aa31LG11G8810 Aethionema arabicum HOM05D002529 ORTHO05D002664 9.8e-07 57.8 84 38.1
Gorai.006G068900 Gossypium raimondii HOM05D002529 ORTHO05D002664 9.8e-07 57.8 72 41.7
TPR.G7728 Trifolium pratense HOM05D002529 ORTHO05D002664 9.8e-07 57.8 65 41.5
Hma1.2p1_0654F.1_g196630 Hydrangea macrophylla HOM05D002529 ORTHO05D002664 1.3e-06 57.4 86 36.0
THA.LOC104821691 Tarenaya hassleriana HOM05D002529 ORTHO05D002664 1.3e-06 57.4 67 44.8
Gohir.A09G056400 Gossypium hirsutum HOM05D002529 ORTHO05D002664 1.7e-06 57.0 82 39.0
RcHm_v2.0_Chr4g0395011 Rosa chinensis HOM05D002529 ORTHO05D002664 1.7e-06 57.0 52 48.1
RcHm_v2.0_Chr5g0025491 Rosa chinensis HOM05D002529 ORTHO05D002664 1.7e-06 57.0 52 48.1
vmacro15348 Vaccinium macrocarpon HOM05D002529 ORTHO05D002664 1.7e-06 57.0 80 38.8
DCAR_024166 Daucus carota HOM05D002529 ORTHO05D002664 3.7e-06 55.8 86 37.2
Cc06_g23700 Coffea canephora HOM05D002529 ORTHO05D002664 4.9e-06 55.5 81 38.3
Thhalv10004943m.g Eutrema salsugineum HOM05D002529 ORTHO05D002664 4.9e-06 55.5 85 35.3
Hma1.2p1_0654F.1_g196660 Hydrangea macrophylla HOM05D002529 ORTHO05D002664 4.9e-06 55.5 57 43.9
Medtr1g035200 Medicago truncatula HOM05D002529 ORTHO05D002664 4.9e-06 55.5 52 48.1
RcHm_v2.0_Chr1g0319871 Rosa chinensis HOM05D002529 ORTHO05D002664 4.9e-06 55.5 50 50.0
Nitab4.5_0002687g0060 Nicotiana tabacum HOM05D002529 ORTHO05D002664 6.3e-06 55.1 71 35.2
Psat4g143200 Pisum sativum HOM05D002529 ORTHO05D002664 6.3e-06 55.1 65 43.1
RcHm_v2.0_Chr6g0306671 Rosa chinensis HOM05D000308 ORTHO05D000194 6.3e-06 55.1 50 48.0
TPR.G37906 Trifolium pratense HOM05D003253 ORTHO05D002664 8.3e-06 54.7 78 35.9


User provided reference genes

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