Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2144 Punica granatum HOM05D008098 ORTHO05D009893 1.3e-76 289.7 147 100.0
Dinv34781 Davidia involucrata HOM05D008098 ORTHO05D009893 1.5e-19 100.1 145 44.1
CiPaw.07G089300 Carya illinoinensis HOM05D008098 ORTHO05D009893 5.5e-19 98.2 128 45.3
CSS0044396 Camellia sinensis var. sinensis HOM05D008098 ORTHO05D009893 4.7e-18 95.1 138 48.6
GSVIVG01001187001 Vitis vinifera HOM05D008098 ORTHO05D009893 3.0e-17 92.4 136 44.1
Actinidia00786 Actinidia chinensis HOM05D008098 ORTHO05D009893 8.9e-17 90.9 133 45.9
Haze_04677 Corylus avellana HOM05D008098 ORTHO05D009893 8.3e-15 84.3 151 43.7
Cfa006173 Carpinus fangiana HOM05D008098 ORTHO05D009893 7.0e-14 81.3 155 40.0
CSS0035580 Camellia sinensis var. sinensis HOM05D008098 ORTHO05D009893 1.2e-13 80.5 136 41.9
Nn1g02382 Nelumbo nucifera HOM05D008098 ORTHO05D009893 1.2e-13 80.5 135 40.7
Rhsim13G0027200 Rhododendron simsii HOM05D008098 ORTHO05D009893 4.5e-13 78.6 135 43.7
EL10Ac5g10528 Beta vulgaris HOM05D008098 ORTHO05D009893 1.0e-12 77.4 144 38.2
Atru.chr5.1485 Acer truncatum HOM05D008098 ORTHO05D009893 2.3e-12 76.3 143 38.5
Lj2A1168T22 Lonicera japonica HOM05D008098 ORTHO05D009893 2.9e-12 75.9 134 42.5
Lj9A530T23 Lonicera japonica HOM05D008098 ORTHO05D009893 2.9e-12 75.9 134 42.5
TAR636G3050 Trochodendron aralioides HOM05D008098 ORTHO05D009893 2.9e-12 75.9 135 36.3
Dinv14021 Davidia involucrata HOM05D008098 ORTHO05D009893 6.6e-12 74.7 143 38.5
COL.COLO4_11875 Corchorus olitorius HOM05D008098 ORTHO05D009893 3.3e-11 72.4 148 36.5
Duzib138G1817 Durio zibethinus HOM05D008098 ORTHO05D009893 4.3e-11 72.0 122 36.9
Migut.D00327 Erythranthe guttata HOM05D008098 ORTHO05D009893 4.3e-11 72.0 123 39.8
Prupe.8G237300 Prunus persica HOM05D008098 ORTHO05D009893 5.6e-11 71.6 126 36.5
Hund02840 Selenicereus undatus HOM05D008098 ORTHO05D009893 5.6e-11 71.6 132 37.9
Dinv44560 Davidia involucrata HOM05D008098 ORTHO05D009893 7.3e-11 71.2 124 41.1
FAN20G2698 Fragaria x ananassa HOM05D008098 ORTHO05D009893 9.5e-11 70.9 136 36.0
MSTRG.12554 Avicennia marina HOM05D008098 ORTHO05D009893 1.2e-10 70.5 124 41.9
FAN24G1322 Fragaria x ananassa HOM05D008098 ORTHO05D009893 1.2e-10 70.5 138 38.4
Sc17g0001270 Simmondsia chinensis HOM05D008098 ORTHO05D009893 1.2e-10 70.5 132 36.4
FAN27G1076 Fragaria x ananassa HOM05D008098 ORTHO05D009893 2.1e-10 69.7 138 37.7
Aqoxy5G00430 Aquilegia oxysepala HOM05D008098 ORTHO05D009893 6.1e-10 68.2 84 44.0
MSTRG.17457 Avicennia marina HOM05D008098 ORTHO05D009893 8.0e-10 67.8 129 39.5
Oeu023884.1 Olea europaea HOM05D008098 ORTHO05D009893 1.4e-09 67.0 107 39.3
RcHm_v2.0_Chr6g0290431 Rosa chinensis HOM05D008098 ORTHO05D009893 1.4e-09 67.0 144 34.7
Ciclev10022764m.g Citrus clementina HOM05D008098 ORTHO05D009893 4.0e-09 65.5 150 36.7
TAR633G1927 Trochodendron aralioides HOM05D008098 ORTHO05D009893 4.0e-09 65.5 132 34.8
MSTRG.18252 Avicennia marina HOM05D008098 ORTHO05D009893 5.2e-09 65.1 69 47.8
Thecc.01G274000 Theobroma cacao HOM05D008098 ORTHO05D009893 5.2e-09 65.1 82 42.7
TAR260G0007 Trochodendron aralioides HOM05D008098 ORTHO05D009893 6.8e-09 64.7 156 32.1
CSS0015317 Camellia sinensis var. sinensis HOM05D008098 ORTHO05D009893 8.9e-09 64.3 61 44.3
FAN16G2666 Fragaria x ananassa HOM05D025153 ORTHO05D017966 8.9e-09 64.3 91 35.2
TAR633G0062 Trochodendron aralioides HOM05D008098 ORTHO05D009893 1.2e-08 63.9 132 34.8
FAN11G2600 Fragaria x ananassa HOM05D025153 ORTHO05D009893 2.0e-08 63.2 45 53.3
SGA_v2.0_scaffold1G00510 Striga asiatica HOM05D008098 ORTHO05D009893 2.6e-08 62.8 49 55.1
Sabra05G0162400 Salix brachista HOM05D008098 ORTHO05D009893 3.4e-08 62.4 144 32.6
AT3G63230 Arabidopsis thaliana HOM05D013860 ORTHO05D009893 4.4e-08 62.0 52 50.0
FAN21G3128 Fragaria x ananassa HOM05D025153 ORTHO05D009893 7.5e-08 61.2 45 51.1
Dinv17090 Davidia involucrata HOM05D008098 ORTHO05D009893 9.8e-08 60.8 42 50.0
AL5G46080 Arabidopsis lyrata HOM05D013860 ORTHO05D009893 1.3e-07 60.5 44 54.5
Carub.0005s2991 Capsella rubella HOM05D013860 ORTHO05D009893 1.3e-07 60.5 42 54.8
FvH4_2g23180 Fragaria vesca HOM05D008098 ORTHO05D009893 1.3e-07 60.5 136 34.6
Manes.01G205500 Manihot esculenta HOM05D008098 ORTHO05D009893 2.9e-07 59.3 124 35.5
Sp5g00310 Schrenkiella parvula HOM05D013860 ORTHO05D009893 2.9e-07 59.3 83 38.6
Sc07g0008970 Simmondsia chinensis HOM05D000562 ORTHO05D000388 2.9e-07 59.3 61 44.3
Sed0019026 Sechium edule HOM05D000562 ORTHO05D000388 3.7e-07 58.9 82 36.6
DCAR_005861 Daucus carota HOM05D008098 ORTHO05D009893 6.4e-07 58.2 134 33.6
Hma1.2p1_1572F.1_g291470 Hydrangea macrophylla HOM05D008098 ORTHO05D009893 6.4e-07 58.2 147 32.0
SGA_v2.0_scaffold148G36431 Striga asiatica HOM05D030106 ORTHO05D030155 6.4e-07 58.2 41 51.2
Potri.002G050100 Populus trichocarpa HOM05D008098 ORTHO05D009893 8.3e-07 57.8 143 30.8
SalBow6G1276 Salvia bowleyana HOM05D008098 ORTHO05D009893 1.1e-06 57.4 43 48.8
unitig_699.g19312 Utricularia gibba HOM05D008098 ORTHO05D009893 1.4e-06 57.0 63 44.4
CAN.G1445.4 Capsicum annuum HOM05D000562 ORTHO05D000388 1.9e-06 56.6 58 39.7
Gohir.D08G205000 Gossypium hirsutum HOM05D008098 ORTHO05D009893 1.9e-06 56.6 64 42.2
Rhsim04G0199800 Rhododendron simsii HOM05D008098 ORTHO05D009893 1.9e-06 56.6 131 35.1
Aa31LG3G15730 Aethionema arabicum HOM05D000690 ORTHO05D001022 2.4e-06 56.2 64 39.1
Gohir.D09G220150 Gossypium hirsutum HOM05D008098 ORTHO05D009893 2.4e-06 56.2 68 36.8
Hma1.2p1_0414F.1_g147540 Hydrangea macrophylla HOM05D000562 ORTHO05D000388 2.4e-06 56.2 66 36.4
Aqoxy3G02587 Aquilegia oxysepala HOM05D000562 ORTHO05D000388 3.2e-06 55.8 49 44.9
Aqoxy7G01779 Aquilegia oxysepala HOM05D000690 ORTHO05D001022 3.2e-06 55.8 63 38.1
AT3G22550 Arabidopsis thaliana HOM05D000690 ORTHO05D001022 4.1e-06 55.5 65 43.1
Carub.0003s2271 Capsella rubella HOM05D000690 ORTHO05D001022 4.1e-06 55.5 63 42.9
Manes.15G171400 Manihot esculenta HOM05D000562 ORTHO05D000388 4.1e-06 55.5 57 36.8
Nitab4.5_0000506g0200 Nicotiana tabacum HOM05D000562 ORTHO05D000388 4.1e-06 55.5 74 33.8
Rhsim04G0201300 Rhododendron simsii HOM05D000690 ORTHO05D001022 4.1e-06 55.5 44 45.5
Aqoxy2G02918 Aquilegia oxysepala HOM05D000562 ORTHO05D000388 5.4e-06 55.1 65 40.0
C04p29970 Brassica napus HOM05D013860 ORTHO05D009893 5.4e-06 55.1 40 55.0
BolC4t24530H Brassica oleracea HOM05D013860 ORTHO05D009893 5.4e-06 55.1 40 55.0
Actinidia23529 Actinidia chinensis HOM05D008098 ORTHO05D009893 7.0e-06 54.7 44 50.0
AL3G36870 Arabidopsis lyrata HOM05D000690 ORTHO05D001022 7.0e-06 54.7 65 43.1
arahy.Tifrunner.gnm1.ann1.909U31 Arachis hypogaea HOM05D000690 ORTHO05D001022 7.0e-06 54.7 93 30.1
arahy.Tifrunner.gnm1.ann1.BIX0E3 Arachis hypogaea HOM05D000690 ORTHO05D001022 7.0e-06 54.7 74 31.1
Nitab4.5_0000506g0230 Nicotiana tabacum HOM05D000562 ORTHO05D000388 7.0e-06 54.7 67 37.3
Sed0009932 Sechium edule HOM05D000562 ORTHO05D000388 7.0e-06 54.7 63 42.9
Atru.chr4.2423 Acer truncatum HOM05D008098 ORTHO05D009893 9.2e-06 54.3 40 47.5
EL10Ac2g02529 Beta vulgaris HOM05D000690 ORTHO05D001022 9.2e-06 54.3 59 39.0
A04p00150 Brassica napus HOM05D013860 ORTHO05D009893 9.2e-06 54.3 40 55.0
BraA04t15737Z Brassica rapa HOM05D013860 ORTHO05D009893 9.2e-06 54.3 40 55.0
Cc03_g03960 Coffea canephora HOM05D000690 ORTHO05D001022 9.2e-06 54.3 49 42.9
Medtr7g095170 Medicago truncatula HOM05D000690 ORTHO05D001022 9.2e-06 54.3 77 32.5
PSO170G2914 Papaver somniferum HOM05D008098 ORTHO05D009893 9.2e-06 54.3 71 39.4
QL05p001413 Quercus lobata HOM05D000562 ORTHO05D000388 9.2e-06 54.3 65 33.8
Sp3g20330 Schrenkiella parvula HOM05D000690 ORTHO05D001022 9.2e-06 54.3 66 39.4


User provided reference genes

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