Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 0.0e+00 1630.9 812 100.0
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 0.0e+00 1141.7 812 69.7
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 0.0e+00 1091.6 817 67.7
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 0.0e+00 1088.6 817 67.3
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 0.0e+00 1084.3 822 65.8
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 0.0e+00 1083.9 817 67.3
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 0.0e+00 1075.8 822 66.1
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 5.6e-312 1073.5 816 66.2
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 2.5e-307 1058.5 818 65.0
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 5.7e-307 1057.4 820 65.1
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 7.4e-307 1057.0 819 64.5
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 2.2e-306 1055.4 817 65.6
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 3.7e-306 1054.7 817 65.6
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 4.8e-306 1054.3 816 64.1
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 2.4e-305 1052.0 817 64.6
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 4.5e-304 1047.7 813 64.6
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 1.0e-303 1046.6 816 65.1
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 1.6e-301 1039.3 814 63.8
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 1.6e-301 1039.3 816 63.5
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 4.7e-301 1037.7 818 63.3
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 7.9e-301 1036.9 818 63.1
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 1.0e-300 1036.6 818 63.2
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 1.4e-300 1036.2 817 63.3
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 1.5e-299 1032.7 812 63.9
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 4.4e-299 1031.2 818 64.9
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 1.3e-298 1029.6 878 59.8
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 8.2e-298 1026.9 818 62.6
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 5.9e-296 1020.8 823 64.6
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 5.5e-294 1014.2 815 62.9
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 7.2e-294 1013.8 815 62.8
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 4.7e-293 1011.1 786 64.5
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 8.0e-293 1010.4 815 62.8
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 8.0e-293 1010.4 812 62.6
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 5.2e-292 1007.7 815 62.7
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 7.5e-291 1003.8 815 62.9
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 1.4e-289 999.6 817 61.9
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 1.2e-288 996.5 817 62.1
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 1.6e-288 996.1 815 62.2
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 1.6e-288 996.1 817 61.3
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 5.9e-288 994.2 854 59.6
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 3.8e-287 991.5 817 61.9
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 5.2e-284 981.1 813 60.8
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 1.5e-283 979.5 815 62.7
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 8.3e-282 973.8 813 59.8
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 1.1e-281 973.4 814 59.8
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 1.4e-281 973.0 878 57.6
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 1.4e-281 973.0 815 61.3
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 9.1e-281 970.3 813 60.3
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 2.0e-280 969.1 837 61.5
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 7.7e-280 967.2 812 59.6
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 8.5e-279 963.8 819 59.7
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 8.5e-279 963.8 812 60.0
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 8.5e-279 963.8 811 59.6
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 2.5e-278 962.2 811 59.7
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 5.5e-278 961.1 813 60.0
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 9.4e-278 960.3 819 59.8
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 2.7e-277 958.7 819 59.8
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 6.1e-277 957.6 820 60.1
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 1.0e-276 956.8 816 59.7
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 5.2e-276 954.5 823 59.7
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 6.8e-276 954.1 817 59.2
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 6.8e-276 954.1 814 59.3
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 4.4e-275 951.4 815 59.0
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 4.4e-275 951.4 815 59.0
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 2.8e-274 948.7 816 59.6
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 2.8e-274 948.7 816 59.6
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 1.1e-273 946.8 816 59.4
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 1.4e-273 946.4 814 58.8
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 1.2e-272 943.3 823 59.2
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 1.6e-272 943.0 817 59.1
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 7.7e-272 940.6 842 58.2
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 1.7e-271 939.5 825 58.7
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 1.9e-270 936.0 817 58.9
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 6.1e-269 931.0 812 58.5
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 8.0e-269 930.6 815 59.3
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 8.0e-269 930.6 815 59.0
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 6.8e-268 927.5 812 58.6
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 1.2e-267 926.8 812 57.5
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 2.0e-267 926.0 825 58.2
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 7.5e-267 924.1 823 58.0
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 1.7e-266 922.9 825 57.8
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 2.2e-266 922.5 815 58.3
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 3.9e-263 911.8 814 58.5
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 4.3e-262 908.3 814 58.1
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 1.2e-253 880.2 809 55.4
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 5.4e-249 864.8 816 54.8
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 1.7e-247 859.8 815 54.8
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 2.5e-246 855.9 809 55.9
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 4.4e-243 845.1 818 54.3
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 1.2e-240 837.0 582 71.3
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 5.6e-238 828.2 626 64.1
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 1.6e-237 826.6 816 53.7
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 2.4e-236 822.8 828 53.7
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 4.4e-235 818.5 816 51.6
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 4.2e-233 812.0 816 52.1
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 7.1e-233 811.2 815 51.4
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 1.2e-227 793.9 754 56.2
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 9.6e-214 747.7 560 65.4
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 2.8e-213 746.1 890 48.0
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 2.6e-211 739.6 814 48.8
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 3.9e-191 672.5 817 45.8
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 3.3e-190 669.5 817 45.8
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 1.3e-189 667.5 850 45.6
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 2.4e-180 636.7 819 42.7
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 7.2e-177 625.2 461 67.7
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 5.2e-175 619.0 828 43.7
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 3.0e-159 566.6 840 38.7
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 9.8e-158 561.6 816 41.2
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 1.2e-150 538.1 582 51.5
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 1.2e-147 528.1 678 43.7
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 5.0e-146 522.7 853 38.2
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 2.8e-144 516.9 817 41.6
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 7.5e-142 508.8 818 40.6
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 3.9e-138 496.5 829 37.0
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 1.5e-134 484.6 476 54.4
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 6.4e-125 452.6 338 66.6
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 7.8e-123 445.7 847 34.8
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 5.8e-94 349.7 387 49.4
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 3.2e-92 344.0 753 30.7
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 1.6e-83 315.1 367 47.7
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 9.7e-65 252.7 750 29.6
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 1.6e-62 245.4 155 74.8
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 2.2e-61 241.5 276 48.9
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 3.2e-60 237.7 275 48.7
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 3.6e-59 234.2 275 48.4
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 2.0e-49 201.8 848 24.4
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 3.7e-48 197.6 200 54.0
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 3.7e-48 197.6 156 62.8
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 3.3e-44 184.5 195 53.8
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 4.5e-38 164.1 468 29.9
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 1.5e-36 159.1 118 66.1
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 2.5e-28 131.7 140 48.6
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 4.3e-28 131.0 137 51.1
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 7.0e-23 113.6 96 61.5
EL10Ac6g14737 Beta vulgaris HOM05D004893 ORTHO05D006320 1.2e-17 96.3 65 72.3
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 4.4e-17 94.4 61 75.4
BraA09t36855Z Brassica rapa HOM05D004893 ORTHO05D006320 1.7e-13 82.4 111 40.5
MBI12_g20565_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 3.9e-13 81.3 64 60.9
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 6.6e-13 80.5 84 46.4
A09p12110 Brassica napus HOM05D004893 ORTHO05D006320 8.6e-13 80.1 111 40.5
CARHR240490 Cardamine hirsuta HOM05D004893 ORTHO05D006320 1.1e-10 73.2 93 39.8
arahy.Tifrunner.gnm1.ann1.BHNU0I Arachis hypogaea HOM05D004893 ORTHO05D006320 2.0e-09 68.9 46 67.4
arahy.Tifrunner.gnm1.ann1.09RZEI Arachis hypogaea HOM05D004893 ORTHO05D006320 5.8e-09 67.4 46 65.2
Lsat_1_v5_gn_5_51440 Lactuca sativa HOM05D004893 ORTHO05D048382 1.1e-07 63.2 96 39.6
arahy.Tifrunner.gnm1.ann1.F8045A Arachis hypogaea HOM05D062897 ORTHO05D023720 6.0e-06 57.4 57 47.4


User provided reference genes

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