Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 0.0e+00 1625.5 836 100.0
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 4.3e-185 652.5 884 46.6
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 7.4e-185 651.7 898 46.3
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 3.2e-180 636.3 880 45.3
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 3.1e-175 619.8 902 44.0
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 4.1e-175 619.4 817 46.5
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 2.0e-174 617.1 945 42.4
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 6.5e-173 612.1 894 43.1
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 8.5e-173 611.7 893 46.0
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 1.1e-172 611.3 891 46.0
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 2.5e-172 610.1 873 44.2
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 2.1e-171 607.1 896 43.9
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 4.7e-171 605.9 899 43.9
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 1.0e-170 604.7 872 44.0
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 1.0e-170 604.7 877 44.0
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 1.1e-169 601.3 898 45.7
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 1.3e-168 597.8 650 50.6
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 2.8e-168 596.7 903 41.9
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 4.8e-168 595.9 886 44.0
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 2.0e-166 590.5 867 43.1
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 2.6e-166 590.1 888 43.7
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 7.7e-166 588.6 867 43.5
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 1.9e-164 583.9 890 42.9
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 7.2e-164 582.0 802 46.5
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 7.2e-164 582.0 887 41.5
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 2.1e-163 580.5 879 42.3
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 2.7e-163 580.1 651 49.5
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 4.7e-163 579.3 876 43.7
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 4.7e-163 579.3 871 43.5
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 4.7e-163 579.3 862 42.7
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 8.0e-163 578.6 650 49.4
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 8.8e-162 575.1 884 42.1
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 2.6e-161 573.5 886 42.3
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 2.6e-161 573.5 881 41.9
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 3.3e-161 573.2 878 42.3
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 9.7e-161 571.6 885 41.8
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 1.7e-160 570.9 863 42.6
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 4.1e-159 566.2 883 41.8
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 5.3e-159 565.8 887 41.5
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 1.6e-158 564.3 886 42.4
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 2.6e-158 563.5 870 41.3
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 3.5e-158 563.1 859 41.9
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 2.5e-156 557.0 912 41.6
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 2.5e-156 557.0 881 41.2
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 2.1e-155 553.9 890 41.2
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 2.7e-155 553.5 888 41.6
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 3.6e-155 553.1 724 45.4
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 4.7e-155 552.7 881 41.4
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 4.7e-155 552.7 876 41.0
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 4.0e-154 549.7 876 40.9
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 4.4e-153 546.2 875 40.0
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 7.5e-153 545.4 900 40.8
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 7.5e-153 545.4 880 41.2
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 4.8e-152 542.7 911 39.3
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 6.3e-152 542.3 862 41.0
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.8e-151 540.8 859 40.7
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 2.4e-151 540.4 651 47.2
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 2.4e-151 540.4 876 39.7
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 5.4e-151 539.3 906 39.2
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 2.0e-150 537.3 870 40.3
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 2.7e-150 537.0 862 41.5
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 6.5e-149 532.3 886 41.3
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 5.5e-148 529.3 898 38.6
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 1.6e-147 527.7 733 42.8
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 2.7e-147 526.9 866 40.9
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 3.6e-147 526.6 878 40.0
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 1.0e-146 525.0 857 41.0
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 1.0e-146 525.0 624 48.2
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 3.0e-146 523.5 652 46.3
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 3.4e-145 520.0 890 40.2
MELO3C012354.2 Cucumis melo HOM05D003594 ORTHO05D004268 4.5e-142 509.6 779 42.2
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 8.6e-141 505.4 829 41.1
CARHR029630 Cardamine hirsuta HOM05D003594 ORTHO05D004268 1.1e-140 505.0 762 41.3
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 3.3e-140 503.4 836 40.6
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 7.3e-140 502.3 899 39.9
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 1.2e-139 501.5 827 41.0
A09p36300 Brassica napus HOM05D003594 ORTHO05D004268 1.2e-139 501.5 671 44.1
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 2.1e-139 500.7 827 41.0
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 6.1e-139 499.2 819 40.3
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 8.0e-139 498.8 836 41.1
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 1.0e-138 498.4 671 44.3
BcaC05g27050 Brassica carinata HOM05D003594 ORTHO05D004268 1.8e-138 497.7 668 44.2
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 1.8e-138 497.7 831 40.8
BolC5t31639H Brassica oleracea HOM05D003594 ORTHO05D004268 3.0e-138 496.9 668 44.2
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 6.8e-138 495.7 872 39.7
C05p29080 Brassica napus HOM05D003594 ORTHO05D004268 1.5e-137 494.6 668 43.9
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 4.4e-137 493.0 860 39.9
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 7.5e-137 492.3 537 50.1
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 2.4e-135 487.3 877 37.7
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 7.0e-135 485.7 875 37.5
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 2.0e-134 484.2 843 40.0
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 3.5e-134 483.4 786 39.8
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 3.0e-133 480.3 942 36.4
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 1.5e-132 478.0 839 39.7
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 1.9e-132 477.6 822 39.7
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 2.5e-132 477.2 648 44.9
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 3.3e-132 476.9 857 39.8
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 1.7e-128 464.5 682 43.5
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 7.0e-127 459.1 641 43.1
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 4.6e-126 456.4 604 46.0
AUR62042073 Chenopodium quinoa HOM05D003594 ORTHO05D004268 1.9e-124 451.1 668 42.4
SGA_v2.0_scaffold295G47526 Striga asiatica HOM05D003594 ORTHO05D004268 5.1e-117 426.4 943 35.9
Gorai.006G020600 Gossypium raimondii HOM05D003594 ORTHO05D004268 1.1e-114 418.7 632 39.9
Gohir.D09G017550 Gossypium hirsutum HOM05D003594 ORTHO05D004268 5.2e-114 416.4 632 39.6
Os05g0295900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 2.6e-113 414.1 698 38.3
Cpa.g.sc183.16 Carica papaya HOM05D003594 ORTHO05D004268 1.7e-112 411.4 734 39.4
CsaV3_5G035440 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.9e-111 407.9 688 41.1
CsaV3_5G035480 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.9e-111 407.9 688 41.1
AUR62043305 Chenopodium quinoa HOM05D003594 ORTHO05D004268 8.6e-109 399.1 648 41.4
CAN.G645.3 Capsicum annuum HOM05D003594 ORTHO05D004268 2.6e-105 387.5 770 36.8
Mapoly0108s0040 Marchantia polymorpha HOM05D003594 ORTHO05D004268 1.9e-103 381.3 662 38.4
CsaV3_5G035460 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.4e-95 355.1 449 46.8
Actinidia18596 Actinidia chinensis HOM05D003594 ORTHO05D004268 6.0e-94 349.7 481 45.3
Phvul.003G001400 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 3.9e-93 347.1 654 42.4
Pp3c8_9490 Physcomitrium patens HOM05D003594 ORTHO05D004268 1.5e-92 345.1 692 35.8
Cc02_g09730 Coffea canephora HOM05D003594 ORTHO05D004268 5.8e-89 333.2 354 50.8
MD09G1289100 Malus domestica HOM05D003594 ORTHO05D004268 6.0e-86 323.2 476 44.3
Zm00001eb231330 Zea mays HOM05D003594 ORTHO05D004268 5.6e-84 316.6 781 33.2
Cc02_g29810 Coffea canephora HOM05D003594 ORTHO05D004268 7.4e-84 316.2 801 33.3
SMO364G0406 Selaginella moellendorffii HOM05D003594 ORTHO05D004268 7.4e-84 316.2 701 34.4
TWI63G1716 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 7.1e-79 299.7 274 54.0
Atru.chr12.1013 Acer truncatum HOM05D003594 ORTHO05D004268 1.6e-78 298.5 637 36.9
Pp3c15_8100 Physcomitrium patens HOM05D003594 ORTHO05D004268 1.6e-75 288.5 655 32.4
Pp3c15_8103 Physcomitrium patens HOM05D003594 ORTHO05D004268 1.6e-75 288.5 655 32.4
Hma1.2p1_0145F.1_g065330 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 3.3e-68 264.2 342 47.4
Hund22286 Selenicereus undatus HOM05D003594 ORTHO05D004268 1.8e-66 258.5 634 34.7
Hund23993 Selenicereus undatus HOM05D003594 ORTHO05D004268 1.5e-65 255.4 637 34.2
Haze_02500 Corylus avellana HOM05D003594 ORTHO05D004268 2.2e-64 251.5 235 55.7
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 8.8e-61 239.6 773 29.2
CsaV3_5G035510 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.1e-58 232.6 227 53.3
CBR_g45421 Chara braunii HOM05D003594 ORTHO05D004268 1.7e-56 225.3 821 29.1
Gohir.A09G018100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 6.1e-54 216.9 414 35.7
GSVIVG01011385001 Vitis vinifera HOM05D003594 ORTHO05D004268 9.1e-50 203.0 436 34.6
Os06g0343900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 6.5e-48 196.8 333 35.1
MD09G1292100 Malus domestica HOM05D003594 ORTHO05D004268 2.3e-45 188.3 481 35.1
MSTRG.27538 Avicennia marina HOM05D003594 ORTHO05D004268 2.2e-43 181.8 144 57.6
CsaV3_5G035420 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.7e-40 172.2 156 53.2
SEGI_27789 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 7.2e-39 166.8 195 49.2
Aqoxy2G02949 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 2.0e-36 158.7 799 25.9
MSTRG.11586 Avicennia marina HOM05D003594 ORTHO05D004268 2.6e-36 158.3 122 57.4
Atru.chr12.1014 Acer truncatum HOM05D003594 ORTHO05D004268 6.3e-35 153.7 140 52.9
Gohir.A09G018150 Gossypium hirsutum HOM05D003594 ORTHO05D004268 9.1e-34 149.8 169 47.3
AagrBONN_evm.TU.Sc2ySwM_228.2673 Anthoceros agrestis HOM05D003594 ORTHO05D004268 2.2e-32 145.2 316 34.8
SHI24306 Sapria himalayana HOM05D003594 ORTHO05D004268 3.8e-32 144.4 250 36.4
Hma1.2p1_2419F.1_g321820 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 7.2e-31 140.2 117 55.6
Psat6g218640 Pisum sativum HOM05D001312 ORTHO05D001832 9.5e-31 139.8 236 39.8
MD09G1289200 Malus domestica HOM05D003594 ORTHO05D004268 4.7e-30 137.5 119 52.1
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 2.6e-28 131.7 232 37.1
ATR0564G271 Amborella trichopoda HOM05D003594 ORTHO05D004268 4.1e-26 124.4 415 29.2
SHI24302 Sapria himalayana HOM05D003594 ORTHO05D004268 3.5e-25 121.3 133 46.6
Haze_02506 Corylus avellana HOM05D003594 ORTHO05D004268 5.9e-25 120.6 350 34.9
MSTRG.27536 Avicennia marina HOM05D003594 ORTHO05D004268 1.6e-22 112.5 254 37.8
BcaB08g34816 Brassica carinata HOM05D002573 ORTHO05D002918 1.0e-21 109.8 174 41.4
Nn3g17196 Nelumbo nucifera HOM05D003594 ORTHO05D004268 6.8e-21 107.1 363 30.6
Haze_02499 Corylus avellana HOM05D003594 ORTHO05D004268 8.9e-21 106.7 89 57.3
Haze_25332 Corylus avellana HOM05D003594 ORTHO05D004268 2.0e-20 105.5 89 57.3
SEGI_05252 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 3.4e-20 104.8 321 33.6
Hund22291 Selenicereus undatus HOM05D003594 ORTHO05D004268 1.7e-19 102.4 215 39.5
CAN.G645.4 Capsicum annuum HOM05D003594 ORTHO05D004268 2.4e-18 98.6 81 55.6
Cc02_g29830 Coffea canephora HOM05D003594 ORTHO05D004268 5.4e-18 97.4 126 47.6
A03p57890 Brassica napus HOM05D003594 ORTHO05D004268 7.0e-18 97.1 92 51.1
A02p30260 Brassica napus HOM05D003594 ORTHO05D004268 1.2e-17 96.3 92 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2672 Anthoceros agrestis HOM05D003594 ORTHO05D004268 3.5e-17 94.7 128 39.8
Actinidia36695 Actinidia chinensis HOM05D003594 ORTHO05D004268 4.3e-15 87.8 345 28.1
C02p37120 Brassica napus HOM05D003594 ORTHO05D004268 9.5e-15 86.7 104 43.3
CsaV3_5G035520 Cucumis sativus L. HOM05D003594 ORTHO05D004268 8.0e-14 83.6 179 36.9
C03p91380 Brassica napus HOM05D003594 ORTHO05D004268 7.5e-12 77.0 65 47.7
BolC3t21454H Brassica oleracea HOM05D003594 ORTHO05D004268 7.5e-12 77.0 65 47.7
BolC5t29265H Brassica oleracea HOM05D003594 ORTHO05D004268 7.5e-12 77.0 65 47.7
C03p15410 Brassica napus HOM05D003594 ORTHO05D004268 9.8e-12 76.6 87 41.4
Hma1.2p1_0053F.1_g030920 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 6.4e-11 73.9 75 49.3
BolC7t45516H Brassica oleracea HOM05D003594 ORTHO05D004268 7.0e-10 70.5 65 44.6
Actinidia36694 Actinidia chinensis HOM05D003594 ORTHO05D004268 4.6e-09 67.8 55 61.8
MCO15G512 Micromonas commoda HOM05D003594 ORTHO05D004268 4.6e-09 67.8 721 21.5
Psat6g091000 Pisum sativum HOM05D003335 ORTHO05D003853 3.0e-08 65.1 80 42.5
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 6.6e-08 63.9 64 48.4
BraA03t14853Z Brassica rapa HOM05D003594 ORTHO05D004268 1.5e-07 62.8 55 47.3
C03p54150 Brassica napus HOM05D003594 ORTHO05D004268 3.3e-07 61.6 55 45.5
SHI24305 Sapria himalayana HOM05D000023 ORTHO05D000014 5.6e-07 60.8 55 56.4
Aa31LG6G5510 Aethionema arabicum HOM05D003594 ORTHO05D004268 1.6e-06 59.3 79 41.8
CDE02G4417 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 1.6e-06 59.3 65 50.8
Glyma.14G085550 Glycine max HOM05D003594 ORTHO05D004268 3.6e-06 58.2 50 48.0


User provided reference genes

Program Settings