Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 1.2e-135 486.5 239 100.0
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 4.2e-40 169.1 256 41.4
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 2.8e-36 156.4 225 42.2
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 3.6e-36 156.0 251 39.8
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 6.2e-36 155.2 248 39.9
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 8.1e-36 154.8 199 45.2
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 2.4e-35 153.3 242 41.7
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 2.4e-35 153.3 242 41.7
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 4.0e-35 152.5 183 48.1
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 1.5e-34 150.6 176 47.2
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 1.5e-34 150.6 168 48.2
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 2.0e-34 150.2 156 46.8
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 5.8e-34 148.7 168 47.6
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 7.6e-34 148.3 214 43.9
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 7.6e-34 148.3 214 43.9
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 1.7e-33 147.1 177 47.5
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 2.2e-33 146.7 167 47.3
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 2.9e-33 146.4 215 41.4
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 2.9e-33 146.4 167 47.3
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 3.8e-33 146.0 167 47.3
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 3.8e-33 146.0 164 50.0
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 4.9e-33 145.6 166 47.0
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 6.4e-33 145.2 216 42.1
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 1.1e-32 144.4 256 40.2
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 1.4e-32 144.1 235 38.3
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 1.4e-32 144.1 216 41.2
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 2.4e-32 143.3 247 38.9
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 5.4e-32 142.1 174 45.4
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 7.1e-32 141.7 246 37.4
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 7.1e-32 141.7 214 40.7
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 2.7e-31 139.8 247 39.3
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 3.5e-31 139.4 231 37.7
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 3.5e-31 139.4 244 40.2
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 3.5e-31 139.4 174 44.3
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 3.5e-31 139.4 164 47.6
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 4.6e-31 139.0 166 45.2
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.6e-31 139.0 182 44.0
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 6.0e-31 138.7 242 40.9
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 7.9e-31 138.3 159 50.9
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 7.9e-31 138.3 175 44.6
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 1.0e-30 137.9 215 39.1
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 1.8e-30 137.1 170 44.1
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 1.8e-30 137.1 237 37.6
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 2.3e-30 136.7 243 37.9
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 3.0e-30 136.3 214 41.6
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 3.0e-30 136.3 238 39.1
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 3.0e-30 136.3 214 41.6
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 3.0e-30 136.3 184 41.8
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 3.9e-30 136.0 234 37.2
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 3.9e-30 136.0 233 36.9
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 3.9e-30 136.0 170 48.2
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 3.9e-30 136.0 159 44.7
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 5.1e-30 135.6 226 39.4
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 5.1e-30 135.6 242 37.2
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 5.1e-30 135.6 226 39.4
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 6.7e-30 135.2 249 39.4
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 6.7e-30 135.2 248 37.5
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 8.7e-30 134.8 238 38.2
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 8.7e-30 134.8 238 38.2
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 8.7e-30 134.8 169 45.0
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 1.1e-29 134.4 253 36.0
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.1e-29 134.4 211 39.3
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.1e-29 134.4 180 43.9
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 1.5e-29 134.0 224 41.1
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 1.5e-29 134.0 249 37.8
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 1.5e-29 134.0 160 46.2
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 1.9e-29 133.7 171 45.0
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 1.9e-29 133.7 171 45.0
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 2.5e-29 133.3 182 42.3
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 3.3e-29 132.9 242 36.8
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 3.3e-29 132.9 234 36.3
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 3.3e-29 132.9 242 36.8
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 4.3e-29 132.5 222 38.3
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 4.3e-29 132.5 246 35.8
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 5.6e-29 132.1 238 38.7
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 7.4e-29 131.7 231 37.2
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 1.6e-28 130.6 164 43.3
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 2.1e-28 130.2 179 43.0
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 2.8e-28 129.8 256 36.7
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 2.8e-28 129.8 176 40.9
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 3.7e-28 129.4 218 36.7
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 6.2e-28 128.6 241 35.3
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 8.1e-28 128.3 170 42.9
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 1.1e-27 127.9 170 42.9
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 1.4e-27 127.5 239 35.1
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 1.4e-27 127.5 174 44.8
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 1.8e-27 127.1 226 36.7
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 1.8e-27 127.1 211 39.3
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 1.8e-27 127.1 169 43.2
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 2.4e-27 126.7 177 42.9
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 2.4e-27 126.7 182 43.4
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 3.1e-27 126.3 154 48.1
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 6.9e-27 125.2 171 40.4
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 6.9e-27 125.2 159 45.9
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 9.0e-27 124.8 244 36.1
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 9.0e-27 124.8 212 40.1
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 9.0e-27 124.8 177 42.9
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 1.2e-26 124.4 161 46.0
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 1.2e-26 124.4 162 43.2
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 1.5e-26 124.0 160 43.8
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 1.7e-25 120.6 181 41.4
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 2.9e-25 119.8 189 42.9
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 6.4e-25 118.6 184 38.0
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 8.4e-25 118.2 158 43.0
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 8.4e-25 118.2 170 42.4
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 2.4e-24 116.7 191 37.7
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 3.2e-24 116.3 227 33.5
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.2e-23 114.4 215 34.0
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 1.6e-23 114.0 155 39.4
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 1.6e-23 114.0 182 39.6
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.7e-23 113.2 211 34.1
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 3.5e-23 112.8 149 45.0
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 4.6e-23 112.5 168 41.1
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 3.9e-22 109.4 182 36.3
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 3.9e-22 109.4 182 36.3
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 5.1e-22 109.0 174 36.8
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 1.9e-21 107.1 181 35.9
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 2.5e-21 106.7 160 43.1
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 2.5e-21 106.7 247 30.8
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 5.6e-21 105.5 122 45.9
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 5.6e-21 105.5 201 35.8
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 1.6e-20 104.0 122 45.9
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 2.1e-20 103.6 163 36.8
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.8e-20 103.2 122 45.1
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 4.8e-20 102.4 212 35.4
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 6.2e-20 102.1 221 36.2
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 6.2e-20 102.1 273 33.3
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 6.2e-20 102.1 195 36.4
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 1.1e-19 101.3 171 37.4
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 1.4e-19 100.9 173 36.4
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 2.4e-19 100.1 175 33.7
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 2.4e-19 100.1 269 31.2
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 3.1e-19 99.8 217 32.3
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 5.3e-19 99.0 258 31.4
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 6.9e-19 98.6 162 36.4
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 6.9e-19 98.6 173 35.3
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 1.5e-18 97.4 265 31.7
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 3.4e-18 96.3 170 33.5
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 5.8e-18 95.5 159 37.1
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 7.6e-18 95.1 216 35.6
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 7.6e-18 95.1 166 34.3
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 1.7e-17 94.0 163 39.3
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 2.2e-17 93.6 175 37.1
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 2.9e-17 93.2 192 34.4
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 6.5e-17 92.0 155 34.8
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 6.5e-17 92.0 174 33.9
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 7.1e-16 88.6 133 43.6
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.0e-14 84.7 160 33.1
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 6.7e-14 82.0 186 32.3
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 3.3e-13 79.7 208 29.8
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 3.3e-13 79.7 184 32.6
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 4.3e-13 79.3 160 31.2
CAN.G546.44 Capsicum annuum HOM05D004173 ORTHO05D004885 4.8e-12 75.9 99 39.4
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 6.3e-12 75.5 152 32.2
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 2.4e-11 73.6 120 36.7
Nitab4.5_0000375g0240 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.2e-10 71.2 98 41.8
Phvul.009G044000 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 1.5e-10 70.9 63 49.2
Lalb_Chr11g0067791 Lupinus albus HOM05D004173 ORTHO05D004885 1.9e-08 63.9 75 49.3
Mapoly0082s0027 Marchantia polymorpha HOM05D004173 ORTHO05D004885 2.3e-06 57.0 161 32.3


User provided reference genes

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