Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2101 Punica granatum HOM05D004716 ORTHO05D005646 0.0e+00 1120.1 603 100.0
Potri.002G069100 Populus trichocarpa HOM05D004716 ORTHO05D005646 1.9e-238 829.3 630 71.1
Manes.18G091200 Manihot esculenta HOM05D004716 ORTHO05D005646 1.2e-237 826.6 619 69.0
Potri.005G191300 Populus trichocarpa HOM05D004716 ORTHO05D005646 1.6e-234 816.2 626 68.1
Atru.chr13.2155 Acer truncatum HOM05D004716 ORTHO05D005646 1.2e-232 810.1 642 66.0
CiPaw.15G016900 Carya illinoinensis HOM05D004716 ORTHO05D005646 4.5e-232 808.1 628 66.7
Haze_17746 Corylus avellana HOM05D004716 ORTHO05D005646 7.6e-232 807.4 628 65.8
Cfa018329 Carpinus fangiana HOM05D004716 ORTHO05D005646 2.9e-231 805.4 628 65.9
Sabra05G0146100 Salix brachista HOM05D004716 ORTHO05D005646 3.8e-231 805.1 619 68.5
COL.COLO4_37837 Corchorus olitorius HOM05D004716 ORTHO05D005646 1.1e-230 803.5 619 69.5
Duzib116G0661 Durio zibethinus HOM05D004716 ORTHO05D005646 3.2e-230 802.0 633 65.9
Eucgr.F04241 Eucalyptus grandis HOM05D004716 ORTHO05D005646 4.2e-230 801.6 638 69.9
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 1.2e-229 800.0 642 65.7
CANSAT25G0539 Cannabis sativa HOM05D004716 ORTHO05D005646 1.6e-229 799.7 632 65.8
Duzib041G0148 Durio zibethinus HOM05D004716 ORTHO05D005646 3.5e-229 798.5 628 65.8
Prupe.8G028200 Prunus persica HOM05D004716 ORTHO05D005646 6.0e-229 797.7 628 66.7
arahy.Tifrunner.gnm1.ann1.LT68UB Arachis hypogaea HOM05D004716 ORTHO05D005646 1.3e-228 796.6 634 67.0
arahy.Tifrunner.gnm1.ann1.RZZD7S Arachis hypogaea HOM05D004716 ORTHO05D005646 1.3e-228 796.6 634 67.0
Thecc.08G149900 Theobroma cacao HOM05D004716 ORTHO05D005646 8.7e-228 793.9 619 66.9
MD05G1023700 Malus domestica HOM05D004716 ORTHO05D005646 1.5e-227 793.1 625 66.2
CiPaw.16G013500 Carya illinoinensis HOM05D004716 ORTHO05D005646 2.8e-226 788.9 627 66.2
RcHm_v2.0_Chr6g0275661 Rosa chinensis HOM05D004716 ORTHO05D005646 3.7e-226 788.5 622 67.5
GSVIVG01034512001 Vitis vinifera HOM05D004716 ORTHO05D005646 4.8e-226 788.1 634 65.3
ClCG09G009620 Citrullus lanatus HOM05D004716 ORTHO05D005646 4.0e-225 785.0 629 65.5
Duzib093G0980 Durio zibethinus HOM05D004716 ORTHO05D005646 5.3e-225 784.6 628 68.5
Gorai.009G253500 Gossypium raimondii HOM05D004716 ORTHO05D005646 5.3e-225 784.6 621 68.6
MD10G1024300 Malus domestica HOM05D004716 ORTHO05D005646 1.3e-223 780.0 625 65.0
Gohir.A05G242900 Gossypium hirsutum HOM05D004716 ORTHO05D005646 8.4e-223 777.3 621 68.6
MELO3C023718.2 Cucumis melo HOM05D004716 ORTHO05D005646 1.1e-222 776.9 627 64.6
Dinv41092 Davidia involucrata HOM05D004716 ORTHO05D005646 2.5e-222 775.8 639 64.8
FvH4_2g13910 Fragaria vesca HOM05D004716 ORTHO05D005646 4.2e-222 775.0 622 65.8
TWI34G0952 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 5.5e-222 774.6 623 66.1
CsaV3_7G025180 Cucumis sativus L. HOM05D004716 ORTHO05D005646 7.1e-222 774.2 627 65.1
FAN27G2333 Fragaria x ananassa HOM05D004716 ORTHO05D005646 9.3e-222 773.9 622 64.5
Sed0005850 Sechium edule HOM05D004716 ORTHO05D005646 9.3e-222 773.9 628 64.5
FAN24G2048 Fragaria x ananassa HOM05D004716 ORTHO05D005646 1.3e-220 770.0 622 65.6
Dinv25852 Davidia involucrata HOM05D004716 ORTHO05D005646 5.1e-220 768.1 640 66.7
FAN15G2444 Fragaria x ananassa HOM05D004716 ORTHO05D005646 5.1e-220 768.1 626 64.1
TWI60G0041 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 5.1e-220 768.1 630 64.1
FAN20G2258 Fragaria x ananassa HOM05D004716 ORTHO05D005646 1.3e-218 763.5 622 65.3
Hma1.2p1_0105F.1_g050810 Hydrangea macrophylla HOM05D004716 ORTHO05D005646 4.8e-218 761.5 652 62.0
Lalb_Chr01g0009631 Lupinus albus HOM05D004716 ORTHO05D005646 1.1e-217 760.4 636 63.5
TAR381G1500 Trochodendron aralioides HOM05D004716 ORTHO05D005646 1.1e-217 760.4 648 65.0
Glyma.10G225500 Glycine max HOM05D004716 ORTHO05D005646 1.5e-216 756.5 622 65.9
Gohir.A05G270100 Gossypium hirsutum HOM05D004716 ORTHO05D005646 2.0e-216 756.1 628 63.7
Gorai.009G285100 Gossypium raimondii HOM05D004716 ORTHO05D005646 5.8e-216 754.6 628 63.5
Glyma.20G166300 Glycine max HOM05D004716 ORTHO05D005646 7.6e-216 754.2 622 66.4
Nn5g28715 Nelumbo nucifera HOM05D004716 ORTHO05D005646 2.9e-215 752.3 631 63.9
Phvul.007G079400 Phaseolus vulgaris HOM05D004716 ORTHO05D005646 4.9e-215 751.5 629 63.8
Actinidia17798 Actinidia chinensis HOM05D004716 ORTHO05D005646 6.5e-215 751.1 631 63.2
Sed0016522 Sechium edule HOM05D004716 ORTHO05D005646 6.5e-215 751.1 622 63.0
Ciclev10000573m.g Citrus clementina HOM05D004716 ORTHO05D005646 1.4e-214 750.0 652 61.3
Cc10_g14730 Coffea canephora HOM05D004716 ORTHO05D005646 1.0e-212 743.8 637 63.1
Ca_19935_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 1.8e-212 743.0 622 63.3
Rhsim06G0090400 Rhododendron simsii HOM05D004716 ORTHO05D005646 1.8e-212 743.0 633 63.0
Oeu046025.1 Olea europaea HOM05D004716 ORTHO05D005646 1.9e-211 739.6 631 62.8
Lj5g0004042 Lotus japonicus HOM05D004716 ORTHO05D005646 2.4e-209 732.6 636 62.6
Nitab4.5_0008759g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 2.4e-209 732.6 631 60.9
TAR625G0458 Trochodendron aralioides HOM05D004716 ORTHO05D005646 5.3e-209 731.5 643 61.0
HanXRQChr10g0279061 Helianthus annuus HOM05D004716 ORTHO05D005646 2.0e-208 729.6 631 64.7
Sed0004003 Sechium edule HOM05D004716 ORTHO05D005646 1.3e-207 726.9 509 70.5
Gohir.D05G272200 Gossypium hirsutum HOM05D004716 ORTHO05D005646 2.9e-207 725.7 628 62.1
Nitab4.5_0000032g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 2.9e-207 725.7 640 60.6
Aa31LG6G9740 Aethionema arabicum HOM05D004716 ORTHO05D005646 4.2e-206 721.8 637 59.5
Peaxi162Scf00765g00315 Petunia axillaris HOM05D004716 ORTHO05D005646 5.5e-206 721.5 624 63.0
Aqoxy5G02106 Aquilegia oxysepala HOM05D004716 ORTHO05D005646 9.4e-206 720.7 638 61.0
PSO210G2251 Papaver somniferum HOM05D004716 ORTHO05D005646 2.7e-205 719.2 647 59.8
MBI09_g32373_MAGBIO Magnolia biondii HOM05D004716 ORTHO05D005646 1.0e-204 717.2 621 61.8
Carub.0001s3471 Capsella rubella HOM05D004716 ORTHO05D005646 1.4e-204 716.8 620 60.6
Gohir.D05G244400 Gossypium hirsutum HOM05D004716 ORTHO05D005646 1.8e-204 716.5 621 63.9
QL02p024060 Quercus lobata HOM05D004716 ORTHO05D005646 2.3e-204 716.1 756 53.4
AUR62013572 Chenopodium quinoa HOM05D004716 ORTHO05D005646 6.7e-204 714.5 636 62.6
Migut.N03224 Erythranthe guttata HOM05D004716 ORTHO05D005646 1.1e-203 713.8 651 59.8
TPR.G36694 Trifolium pratense HOM05D004716 ORTHO05D005646 4.3e-203 711.8 530 66.8
Sp1g32700 Schrenkiella parvula HOM05D004716 ORTHO05D005646 5.7e-203 711.4 633 59.1
Thhalv10011324m.g Eutrema salsugineum HOM05D004716 ORTHO05D005646 9.7e-203 710.7 622 59.3
AL1G51810 Arabidopsis lyrata HOM05D004716 ORTHO05D005646 2.8e-202 709.1 620 60.6
Lalb_Chr06g0161551 Lupinus albus HOM05D004716 ORTHO05D005646 2.8e-202 709.1 621 62.8
A10p07790 Brassica napus HOM05D004716 ORTHO05D005646 3.7e-202 708.8 616 60.4
TPR.G30003 Trifolium pratense HOM05D004716 ORTHO05D005646 6.3e-202 708.0 622 61.6
PSO238G0051 Papaver somniferum HOM05D004716 ORTHO05D005646 8.2e-202 707.6 646 60.8
BcaC08g42816 Brassica carinata HOM05D004716 ORTHO05D005646 3.1e-201 705.7 621 59.7
C06p00280 Brassica napus HOM05D004716 ORTHO05D005646 3.1e-201 705.7 621 59.7
BraSC36t46025Z Brassica rapa HOM05D004716 ORTHO05D005646 3.1e-201 705.7 616 60.1
BcaB07g33979 Brassica carinata HOM05D004716 ORTHO05D005646 5.3e-201 704.9 616 61.2
EL10Ac1g01533 Beta vulgaris HOM05D004716 ORTHO05D005646 6.9e-201 704.5 648 60.5
DCAR_001131 Daucus carota HOM05D004716 ORTHO05D005646 6.9e-201 704.5 621 60.2
THA.LOC104809692 Tarenaya hassleriana HOM05D004716 ORTHO05D005646 1.2e-200 703.7 587 63.2
Lsat_1_v5_gn_6_99641 Lactuca sativa HOM05D004716 ORTHO05D005646 1.5e-200 703.4 625 63.2
Sopen04g027280 Solanum pennellii HOM05D004716 ORTHO05D005646 3.4e-200 702.2 647 58.7
AUR62026717 Chenopodium quinoa HOM05D004716 ORTHO05D005646 7.7e-200 701.0 632 62.8
AT1G43690 Arabidopsis thaliana HOM05D004716 ORTHO05D005646 1.3e-199 700.3 621 59.9
Medtr1g098940 Medicago truncatula HOM05D004716 ORTHO05D005646 1.3e-199 700.3 634 60.6
MSTRG.22371 Avicennia marina HOM05D004716 ORTHO05D005646 1.7e-199 699.9 652 59.8
CAN.G268.7 Capsicum annuum HOM05D004716 ORTHO05D005646 2.9e-199 699.1 644 61.2
Solyc04g071320.4 Solanum lycopersicum HOM05D004716 ORTHO05D005646 6.1e-197 691.4 645 59.4
CARHR035580 Cardamine hirsuta HOM05D004716 ORTHO05D005646 1.8e-196 689.9 617 58.2
Ah.05g167860 Amaranthus hybridus HOM05D004716 ORTHO05D005646 5.1e-196 688.3 638 59.7
ECA246G4589 Erigeron canadensis HOM05D004716 ORTHO05D005646 1.5e-195 686.8 614 62.5
unitig_62.g23528 Utricularia gibba HOM05D004716 ORTHO05D005646 5.9e-192 674.9 632 58.7
SalBow7G0781 Salvia bowleyana HOM05D004716 ORTHO05D005646 7.7e-192 674.5 634 57.3
Nn1g06102 Nelumbo nucifera HOM05D004716 ORTHO05D005646 3.7e-186 655.6 490 68.2
SGA_v2.0_scaffold25G11175 Striga asiatica HOM05D004716 ORTHO05D005646 4.8e-186 655.2 653 55.6
Lj7A371T50 Lonicera japonica HOM05D004716 ORTHO05D005646 1.4e-185 653.7 526 64.4
Zm00001eb422340 Zea mays HOM05D004716 ORTHO05D005646 7.7e-184 647.9 624 56.1
CDE08G0143 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 1.9e-182 643.3 612 57.4
Lj4C695G10 Lonicera japonica HOM05D004716 ORTHO05D005646 1.0e-180 637.5 607 57.8
CSS0049856 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 1.7e-178 630.2 460 68.3
Migut.C01013 Erythranthe guttata HOM05D004716 ORTHO05D005646 1.6e-176 623.6 630 54.6
SalBow6G6163 Salvia bowleyana HOM05D004716 ORTHO05D005646 6.8e-172 608.2 683 52.7
Cpa.g.sc21.190 Carica papaya HOM05D004716 ORTHO05D005646 2.0e-171 606.7 432 70.8
Ca_25988_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 7.5e-171 604.7 398 73.9
SHI09390 Sapria himalayana HOM05D004716 ORTHO05D005646 8.3e-170 601.3 482 62.2
Oeu011938.1 Olea europaea HOM05D004716 ORTHO05D005646 3.5e-168 595.9 621 55.1
ATR0772G093 Amborella trichopoda HOM05D004716 ORTHO05D005646 7.8e-160 568.2 460 62.8
HPP92_019355 Vanilla planifolia HOM05D004716 ORTHO05D005646 2.9e-159 566.2 559 56.5
SGA_v2.0_scaffold24G10374 Striga asiatica HOM05D004716 ORTHO05D005646 7.3e-158 561.6 647 51.2
CDE06G2375 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 1.6e-157 560.5 612 52.5
SMO331G0079 Selaginella moellendorffii HOM05D004716 ORTHO05D005646 1.8e-156 557.0 611 51.2
Sc02g0004170 Simmondsia chinensis HOM05D004716 ORTHO05D005646 2.9e-154 549.7 455 61.1
Psat6g193200 Pisum sativum HOM05D004716 ORTHO05D005646 4.6e-152 542.3 316 82.9
Mapoly0014s0164 Marchantia polymorpha HOM05D004716 ORTHO05D005646 2.3e-151 540.0 662 47.4
Oeu014493.1 Olea europaea HOM05D004716 ORTHO05D005646 8.6e-151 538.1 349 73.9
Psat6g193040 Pisum sativum HOM05D004716 ORTHO05D005646 2.1e-144 516.9 301 82.1
Pp3c6_18530 Physcomitrium patens HOM05D004716 ORTHO05D005646 8.6e-143 511.5 643 44.9
AagrBONN_evm.TU.Sc2ySwM_344.4417 Anthoceros agrestis HOM05D004716 ORTHO05D005646 8.1e-141 505.0 675 45.0
vmacro21155 Vaccinium macrocarpon HOM05D004716 ORTHO05D005646 6.8e-140 501.9 351 71.5
Pp3c5_6660 Physcomitrium patens HOM05D004716 ORTHO05D005646 3.4e-139 499.6 641 43.8
Zm00001eb422260 Zea mays HOM05D004716 ORTHO05D005646 2.9e-130 469.9 317 72.6
CBR_g11170 Chara braunii HOM05D004716 ORTHO05D005646 7.1e-129 465.3 556 48.0
Os04g0421800 Oryza sativa ssp. japonica HOM05D004716 ORTHO05D005646 2.4e-124 450.3 300 71.3
HanXRQChr10g0277841 Helianthus annuus HOM05D004716 ORTHO05D005646 4.3e-110 402.9 310 68.7
Zm00001eb422280 Zea mays HOM05D004716 ORTHO05D005646 1.5e-102 377.9 261 70.1
Zm00001eb422320 Zea mays HOM05D004716 ORTHO05D005646 1.5e-102 377.9 261 70.1
Actinidia10653 Actinidia chinensis HOM05D004716 ORTHO05D005646 4.1e-68 263.5 231 61.5
PRCOL_00002924 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 3.2e-57 227.3 343 39.1
VMungo0464G1352 Vigna mungo HOM05D004716 ORTHO05D005646 7.3e-41 172.9 258 44.2
CAN.G309.90 Capsicum annuum HOM05D004716 ORTHO05D005646 3.9e-34 150.6 193 48.2
Cpa.g.sc21.191 Carica papaya HOM05D004716 ORTHO05D005646 1.4e-31 142.1 175 51.4
Cre06.g286600 Chlamydomonas reinhardtii HOM05D004716 ORTHO05D005646 1.2e-30 139.0 268 35.1
PRCOL_00004133 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 6.0e-27 126.7 283 35.3
Actinidia13988 Actinidia chinensis HOM05D004716 ORTHO05D005646 7.8e-27 126.3 87 67.8
ATR0772G018 Amborella trichopoda HOM05D004716 ORTHO05D005646 8.1e-24 116.3 206 41.3
Actinidia10651 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.4e-20 105.5 166 55.4
TAR636G3535 Trochodendron aralioides HOM05D004716 ORTHO05D005646 1.2e-11 75.9 92 47.8
Ca_25987_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 1.0e-10 72.8 156 37.2
CSS0021208 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 3.0e-10 71.2 145 55.2
Psat6g193080 Pisum sativum HOM05D000257 ORTHO05D008537 1.9e-09 68.6 67 58.2
SEGI_31186 Sequoiadendron giganteum HOM05D004716 ORTHO05D005646 3.3e-09 67.8 148 33.8
HanXRQChr10g0277851 Helianthus annuus HOM05D004716 ORTHO05D005646 1.6e-08 65.5 54 59.3
Oeu014494.1 Olea europaea HOM05D004716 ORTHO05D005646 4.5e-06 57.4 168 33.9


User provided reference genes

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