Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2083 Punica granatum HOM05D005553 ORTHO05D006866 0.0e+00 1214.1 604 100.0
Eucgr.K02143 Eucalyptus grandis HOM05D005553 ORTHO05D006866 3.1e-241 838.6 607 68.9
Cfa002842 Carpinus fangiana HOM05D005553 ORTHO05D006866 1.2e-237 826.6 606 68.3
Dinv12662 Davidia involucrata HOM05D005553 ORTHO05D006866 7.9e-237 823.9 616 67.5
CANSAT01G0440 Cannabis sativa HOM05D005553 ORTHO05D006866 2.5e-235 818.9 601 67.7
MD10G1161200 Malus domestica HOM05D005553 ORTHO05D006866 1.1e-233 813.5 611 66.4
Prupe.8G200200 Prunus persica HOM05D005553 ORTHO05D006866 2.4e-233 812.4 607 66.6
CSS0002030 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 8.4e-231 803.9 606 67.5
Manes.13G047900 Manihot esculenta HOM05D005553 ORTHO05D006866 2.5e-227 792.3 621 65.7
TWI36G0825 Tripterygium wilfordii HOM05D005553 ORTHO05D006866 8.2e-226 787.3 604 66.6
Hma1.2p1_1018F.1_g248400 Hydrangea macrophylla HOM05D005553 ORTHO05D006866 2.0e-224 782.7 573 68.4
Cpa.g.sc8.131 Carica papaya HOM05D005553 ORTHO05D006866 1.0e-223 780.4 613 65.6
RcHm_v2.0_Chr6g0284311 Rosa chinensis HOM05D005553 ORTHO05D006866 3.8e-223 778.5 613 65.3
Ah.08g214520 Amaranthus hybridus HOM05D005553 ORTHO05D006866 2.5e-222 775.8 590 64.6
CsaV3_6G002380 Cucumis sativus L. HOM05D005553 ORTHO05D006866 1.6e-221 773.1 606 64.2
FAN27G0725 Fragaria x ananassa HOM05D005553 ORTHO05D006866 1.9e-219 766.1 609 64.5
PGSC0003DMG400017493 Solanum tuberosum HOM05D005553 ORTHO05D006866 1.9e-219 766.1 601 64.1
Sopen09g022770 Solanum pennellii HOM05D005553 ORTHO05D006866 4.3e-219 765.0 601 64.1
Lalb_Chr03g0041571 Lupinus albus HOM05D005553 ORTHO05D006866 7.4e-219 764.2 603 63.8
vmacro14742 Vaccinium macrocarpon HOM05D005553 ORTHO05D006866 7.4e-219 764.2 614 64.8
Solyc09g059600.4 Solanum lycopersicum HOM05D005553 ORTHO05D006866 2.2e-218 762.7 601 64.1
Glyma.18G166600 Glycine max HOM05D005553 ORTHO05D006866 4.8e-218 761.5 603 62.5
FvH4_2g18680 Fragaria vesca HOM05D005553 ORTHO05D006866 1.1e-217 760.4 596 65.3
Potri.002G245000 Populus trichocarpa HOM05D005553 ORTHO05D006866 1.1e-217 760.4 610 65.4
VMungo1383G1602 Vigna mungo HOM05D005553 ORTHO05D006866 1.4e-217 760.0 602 62.8
CiPaw.03G146800 Carya illinoinensis HOM05D005553 ORTHO05D006866 2.4e-217 759.2 525 70.7
FAN24G0205 Fragaria x ananassa HOM05D005553 ORTHO05D006866 3.1e-217 758.8 596 65.1
Nitab4.5_0000045g0420 Nicotiana tabacum HOM05D005553 ORTHO05D006866 6.9e-217 757.7 627 61.1
Hund05570 Selenicereus undatus HOM05D005553 ORTHO05D006866 6.9e-217 757.7 593 63.7
CSS0038931 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 3.4e-216 755.4 606 65.0
Sc05g0002010 Simmondsia chinensis HOM05D005553 ORTHO05D006866 1.7e-215 753.1 621 61.2
Oeu023098.1 Olea europaea HOM05D005553 ORTHO05D006866 2.2e-215 752.7 605 63.5
Sabra02G0186400 Salix brachista HOM05D005553 ORTHO05D006866 2.9e-215 752.3 610 64.6
Nn1g07927 Nelumbo nucifera HOM05D005553 ORTHO05D006866 5.0e-215 751.5 610 62.6
Ciclev10019403m.g Citrus clementina HOM05D005553 ORTHO05D006866 8.5e-215 750.7 607 63.6
arahy.Tifrunner.gnm1.ann1.T3HSIJ Arachis hypogaea HOM05D005553 ORTHO05D006866 1.4e-214 750.0 593 62.7
Phvul.008G130400 Phaseolus vulgaris HOM05D005553 ORTHO05D006866 1.4e-214 750.0 602 62.3
arahy.Tifrunner.gnm1.ann1.K25WW2 Arachis hypogaea HOM05D005553 ORTHO05D006866 3.2e-214 748.8 591 62.8
PSO782G3165 Papaver somniferum HOM05D005553 ORTHO05D006866 3.2e-214 748.8 609 60.3
CAN.G5.44 Capsicum annuum HOM05D005553 ORTHO05D006866 4.2e-214 748.4 604 62.7
PSO063G5023 Papaver somniferum HOM05D005553 ORTHO05D006866 1.2e-213 746.9 608 60.5
Glyma.08G349700 Glycine max HOM05D005553 ORTHO05D006866 4.6e-213 745.0 600 63.2
Medtr7g056117 Medicago truncatula HOM05D005553 ORTHO05D006866 6.1e-213 744.6 604 61.9
Gorai.001G232700 Gossypium raimondii HOM05D005553 ORTHO05D006866 7.9e-213 744.2 613 63.1
HanXRQChr07g0189551 Helianthus annuus HOM05D005553 ORTHO05D006866 1.3e-212 743.4 606 62.0
THA.LOC104818968 Tarenaya hassleriana HOM05D005553 ORTHO05D006866 3.9e-212 741.9 617 63.2
MSTRG.17999 Avicennia marina HOM05D005553 ORTHO05D006866 5.1e-212 741.5 612 63.2
Ca_24091_v3 Cicer arietinum L. HOM05D005553 ORTHO05D006866 6.7e-212 741.1 607 61.6
COL.COLO4_15644 Corchorus olitorius HOM05D005553 ORTHO05D006866 8.8e-212 740.7 603 62.5
Thecc.01G222300 Theobroma cacao HOM05D005553 ORTHO05D006866 8.8e-212 740.7 586 63.8
Duzib138G1946 Durio zibethinus HOM05D005553 ORTHO05D006866 1.5e-211 740.0 612 61.8
Gohir.D07G206400 Gossypium hirsutum HOM05D005553 ORTHO05D006866 1.9e-211 739.6 612 62.6
Sp3g06120 Schrenkiella parvula HOM05D005553 ORTHO05D006866 4.3e-211 738.4 592 63.5
Carub.0003s0670 Capsella rubella HOM05D005553 ORTHO05D006866 1.7e-210 736.5 590 62.0
AL3G18430 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 1.1e-209 733.8 592 63.0
Aqoxy2G03234 Aquilegia oxysepala HOM05D005553 ORTHO05D006866 1.4e-209 733.4 605 59.2
Gohir.A07G200000 Gossypium hirsutum HOM05D005553 ORTHO05D006866 2.0e-208 729.6 612 62.3
GSVIVG01038357001 Vitis vinifera HOM05D005553 ORTHO05D006866 2.0e-208 729.6 578 64.5
BcaC05g29748 Brassica carinata HOM05D005553 ORTHO05D006866 2.2e-207 726.1 589 62.3
Cc01_g16820 Coffea canephora HOM05D005553 ORTHO05D006866 2.2e-207 726.1 572 64.0
Lj2A1127T50 Lonicera japonica HOM05D005553 ORTHO05D006866 3.8e-207 725.3 580 64.5
QL09p052121 Quercus lobata HOM05D005553 ORTHO05D006866 3.8e-207 725.3 604 62.6
Lj1g0021333 Lotus japonicus HOM05D005553 ORTHO05D006866 5.0e-207 724.9 602 61.8
CARHR081820 Cardamine hirsuta HOM05D005553 ORTHO05D006866 1.4e-206 723.4 614 60.6
Thhalv10020331m.g Eutrema salsugineum HOM05D005553 ORTHO05D006866 1.4e-206 723.4 614 61.2
QL09p052989 Quercus lobata HOM05D005553 ORTHO05D006866 1.4e-206 723.4 604 62.9
AL384U10020 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 3.2e-206 722.2 589 62.6
AT3G07180 Arabidopsis thaliana HOM05D005553 ORTHO05D006866 3.2e-206 722.2 589 62.0
Psat3g147960 Pisum sativum HOM05D005553 ORTHO05D006866 3.2e-206 722.2 613 59.5
Sed0021986 Sechium edule HOM05D005553 ORTHO05D006866 2.1e-205 719.5 575 64.0
BraA05t22829Z Brassica rapa HOM05D005553 ORTHO05D006866 3.6e-205 718.8 616 61.5
BcaC05g29847 Brassica carinata HOM05D005553 ORTHO05D006866 1.4e-204 716.8 586 63.0
A05p41030 Brassica napus HOM05D005553 ORTHO05D006866 6.7e-204 714.5 616 61.5
BolC5t34669H Brassica oleracea HOM05D005553 ORTHO05D006866 6.7e-204 714.5 587 62.5
Lsat_1_v5_gn_9_13060 Lactuca sativa HOM05D005553 ORTHO05D006866 8.8e-204 714.1 607 60.3
C05p60190 Brassica napus HOM05D005553 ORTHO05D006866 1.1e-203 713.8 587 62.5
Migut.N00626 Erythranthe guttata HOM05D005553 ORTHO05D006866 1.1e-203 713.8 609 60.4
Nitab4.5_0000345g0010 Nicotiana tabacum HOM05D005553 ORTHO05D006866 7.4e-203 711.1 673 55.9
Atru.chr6.1417 Acer truncatum HOM05D005553 ORTHO05D006866 9.7e-203 710.7 595 62.0
Haze_24835 Corylus avellana HOM05D005553 ORTHO05D006866 1.1e-201 707.2 595 62.0
EL10Ac7g17878 Beta vulgaris HOM05D005553 ORTHO05D006866 7.7e-200 701.0 606 59.7
Aa31LG5G17740 Aethionema arabicum HOM05D005553 ORTHO05D006866 2.2e-199 699.5 616 59.7
PSO339G3667 Papaver somniferum HOM05D005553 ORTHO05D006866 8.8e-196 687.6 579 59.8
MBI06_g04543_MAGBIO Magnolia biondii HOM05D005553 ORTHO05D006866 1.5e-195 686.8 608 58.4
ClCG09G008830 Citrullus lanatus HOM05D005553 ORTHO05D006866 1.3e-194 683.7 608 59.7
FAN15G3597 Fragaria x ananassa HOM05D005553 ORTHO05D006866 9.1e-193 677.6 659 56.8
MELO3C020015.2 Cucumis melo HOM05D005553 ORTHO05D006866 1.2e-192 677.2 557 61.4
ECA247G0750 Erigeron canadensis HOM05D005553 ORTHO05D006866 1.1e-190 670.6 604 59.4
Haze_24838 Corylus avellana HOM05D005553 ORTHO05D006866 2.0e-187 659.8 606 57.8
DCAR_023559 Daucus carota HOM05D005553 ORTHO05D006866 3.1e-185 652.5 563 59.5
Peaxi162Scf00238g00217 Petunia axillaris HOM05D005553 ORTHO05D006866 1.3e-183 647.1 577 58.9
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 9.4e-182 641.0 593 55.5
Rhsim01G0254300 Rhododendron simsii HOM05D005553 ORTHO05D006866 6.1e-181 638.3 571 59.7
arahy.Tifrunner.gnm1.ann1.62F6YN Arachis hypogaea HOM05D005553 ORTHO05D006866 2.3e-180 636.3 584 56.5
AUR62001118 Chenopodium quinoa HOM05D005553 ORTHO05D006866 3.0e-180 636.0 593 56.2
Actinidia09473 Actinidia chinensis HOM05D005553 ORTHO05D006866 4.0e-180 635.6 600 57.0
CDE08G1475 Ceratophyllum demersum HOM05D005553 ORTHO05D006866 4.0e-180 635.6 608 54.6
Actinidia23714 Actinidia chinensis HOM05D005553 ORTHO05D006866 1.7e-178 630.2 611 57.3
Duzib211G0174 Durio zibethinus HOM05D005553 ORTHO05D006866 5.9e-176 621.7 541 60.3
Os01g0907300 Oryza sativa ssp. japonica HOM05D005553 ORTHO05D006866 5.9e-176 621.7 606 54.8
ATR0609G062 Amborella trichopoda HOM05D005553 ORTHO05D006866 2.8e-173 612.8 595 53.6
Zm00001eb365330 Zea mays HOM05D005553 ORTHO05D006866 6.1e-173 611.7 584 55.7
TPR.G6452 Trifolium pratense HOM05D005553 ORTHO05D006866 9.2e-169 597.8 565 55.4
AUR62016558 Chenopodium quinoa HOM05D005553 ORTHO05D006866 5.9e-168 595.1 597 52.9
TAR365G1156 Trochodendron aralioides HOM05D005553 ORTHO05D006866 3.0e-164 582.8 441 66.0
arahy.Tifrunner.gnm1.ann1.B0WXN9 Arachis hypogaea HOM05D005553 ORTHO05D006866 9.8e-155 551.2 595 49.4
Potri.002G244801 Populus trichocarpa HOM05D005553 ORTHO05D006866 3.9e-151 539.3 343 76.4
SHI14561 Sapria himalayana HOM05D005553 ORTHO05D006866 4.7e-149 532.3 543 51.7
DCAR_000631 Daucus carota HOM05D005553 ORTHO05D006866 1.7e-146 523.9 563 51.9
SalBow3G3653 Salvia bowleyana HOM05D005553 ORTHO05D006866 1.7e-143 513.8 472 57.0
Dinv19184 Davidia involucrata HOM05D005553 ORTHO05D006866 2.0e-139 500.4 441 58.3
Pp3c13_19160 Physcomitrium patens HOM05D005553 ORTHO05D006866 1.1e-121 441.4 616 42.7
Mapoly0045s0104 Marchantia polymorpha HOM05D005553 ORTHO05D006866 2.5e-118 430.3 618 40.9
unitig_0.g372 Utricularia gibba HOM05D005553 ORTHO05D006866 2.8e-109 400.2 513 45.6
AagrBONN_evm.TU.Sc2ySwM_117.1632 Anthoceros agrestis HOM05D005553 ORTHO05D006866 4.8e-109 399.4 572 41.1
SMO353G0187 Selaginella moellendorffii HOM05D005553 ORTHO05D006866 1.3e-106 391.3 577 38.8
arahy.Tifrunner.gnm1.ann1.ET68I8 Arachis hypogaea HOM05D005553 ORTHO05D006866 8.5e-98 362.1 337 53.1
arahy.Tifrunner.gnm1.ann1.SPK719 Arachis hypogaea HOM05D005553 ORTHO05D006866 6.3e-93 345.9 360 50.0
QL05p022419 Quercus lobata HOM05D005553 ORTHO05D006866 3.0e-87 327.0 236 66.9
arahy.Tifrunner.gnm1.ann1.YI9T1V Arachis hypogaea HOM05D005553 ORTHO05D006866 6.3e-85 319.3 374 46.5
QL02p097148 Quercus lobata HOM05D005553 ORTHO05D006866 4.1e-76 290.0 229 61.6
CBR_g46590 Chara braunii HOM05D005553 ORTHO05D006866 8.8e-71 272.3 447 35.1
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 3.7e-69 266.9 233 60.5
arahy.Tifrunner.gnm1.ann1.DF0SS3 Arachis hypogaea HOM05D005553 ORTHO05D006866 9.8e-62 242.3 286 45.8
HPP92_001410 Vanilla planifolia HOM05D005553 ORTHO05D006866 7.0e-60 236.1 216 56.5
arahy.Tifrunner.gnm1.ann1.3A36EA Arachis hypogaea HOM05D005553 ORTHO05D006866 1.0e-58 232.3 185 63.8
EL10Ac7g17877 Beta vulgaris HOM05D005553 ORTHO05D006866 2.8e-32 144.4 204 47.1
SEGI_34191 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 2.3e-31 141.4 146 46.6
SEGI_35984 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 5.2e-31 140.2 266 34.6
arahy.Tifrunner.gnm1.ann1.UUY44J Arachis hypogaea HOM05D005553 ORTHO05D006866 6.6e-26 123.2 210 36.2
unitig_0.g371 Utricularia gibba HOM05D005553 ORTHO05D006866 3.6e-24 117.5 74 79.7
Cfa026900 Carpinus fangiana HOM05D005553 ORTHO05D006866 4.7e-24 117.1 314 29.6
Cre01.g013400 Chlamydomonas reinhardtii HOM05D005553 ORTHO05D006866 2.2e-21 108.2 425 23.5
A05p41020 Brassica napus HOM05D005553 ORTHO05D006866 2.7e-19 101.3 231 36.4
TPR.G39542 Trifolium pratense HOM05D005553 ORTHO05D006866 1.6e-16 92.0 50 78.0
MCO09G019 Micromonas commoda HOM05D005553 ORTHO05D006866 1.4e-12 79.0 165 32.1
TAR365G0595 Trochodendron aralioides HOM05D005553 ORTHO05D006866 1.6e-11 75.5 91 52.7
VMungo1383G0327 Vigna mungo HOM05D005553 ORTHO05D006866 6.6e-10 70.1 59 55.9


User provided reference genes

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