Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 1.7e-263 912.1 461 100.0
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 8.6e-159 564.3 473 62.6
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 6.1e-157 558.1 482 61.4
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 8.9e-156 554.3 474 62.0
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 1.3e-154 550.4 473 61.1
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 3.7e-154 548.9 473 61.7
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 8.3e-154 547.7 478 60.7
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 3.2e-153 545.8 474 61.8
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 3.2e-153 545.8 463 61.8
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 4.1e-153 545.4 479 59.3
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 9.2e-153 544.3 472 61.2
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 7.8e-152 541.2 470 60.6
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 7.8e-152 541.2 472 61.0
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 6.6e-151 538.1 463 60.9
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 8.6e-151 537.7 470 59.8
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 1.1e-150 537.3 473 61.1
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 1.5e-150 537.0 477 60.2
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 5.6e-150 535.0 479 58.5
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 2.1e-149 533.1 476 59.0
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 2.8e-149 532.7 469 60.6
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 2.8e-149 532.7 465 60.0
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 3.6e-149 532.3 469 60.6
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 3.1e-148 529.3 485 58.4
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 5.2e-148 528.5 472 59.3
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 8.9e-148 527.7 463 61.8
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.2e-147 527.3 471 59.7
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.2e-147 527.3 471 59.9
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 2.6e-147 526.2 473 57.9
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 5.8e-147 525.0 466 60.1
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 2.2e-146 523.1 469 59.1
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 6.4e-146 521.5 471 59.0
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 1.1e-145 520.8 473 57.7
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 1.9e-145 520.0 472 58.9
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 9.2e-145 517.7 477 56.6
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 1.2e-144 517.3 480 58.3
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 6.0e-144 515.0 460 59.1
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 7.8e-144 514.6 475 57.7
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 1.0e-143 514.2 469 58.8
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.3e-143 513.8 460 59.1
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.7e-143 513.5 475 57.9
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 3.9e-143 512.3 472 57.8
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.9e-142 510.0 460 58.5
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 2.5e-142 509.6 464 56.9
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 2.8e-141 506.1 479 56.4
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 3.6e-141 505.8 475 58.1
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 1.1e-140 504.2 459 58.6
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 3.1e-140 502.7 478 57.7
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 3.1e-140 502.7 465 57.8
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 4.0e-140 502.3 468 57.3
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 2.0e-139 500.0 459 58.6
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 2.0e-139 500.0 466 57.5
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 2.6e-139 499.6 449 57.5
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 2.6e-139 499.6 471 56.1
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 5.8e-139 498.4 474 57.6
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 5.8e-139 498.4 461 57.5
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 1.7e-138 496.9 469 57.6
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.2e-138 496.5 466 57.5
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.9e-138 495.4 466 57.1
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 6.4e-138 495.0 461 56.0
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 2.4e-137 493.0 473 55.8
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 1.0e-135 487.6 470 55.7
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 1.3e-135 487.3 464 56.5
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 3.0e-135 486.1 469 56.7
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 8.6e-135 484.6 470 56.8
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 5.6e-134 481.9 467 57.6
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 4.7e-133 478.8 473 54.5
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 6.2e-133 478.4 473 53.5
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 6.8e-132 474.9 462 54.8
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 1.1e-129 467.6 462 53.7
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 1.1e-129 467.6 457 53.8
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 5.4e-129 465.3 465 52.3
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 9.2e-129 464.5 461 53.6
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 1.6e-128 463.8 457 53.2
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 1.6e-128 463.8 460 52.8
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 2.1e-128 463.4 465 55.1
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 2.7e-128 463.0 461 52.7
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 6.0e-128 461.8 459 55.3
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 7.8e-128 461.5 469 54.2
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 1.0e-127 461.1 457 52.5
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 1.0e-127 461.1 463 54.4
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 1.0e-127 461.1 455 54.9
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 1.3e-127 460.7 469 53.3
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 3.0e-127 459.5 457 52.5
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 8.6e-127 458.0 453 54.3
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 1.1e-126 457.6 462 51.9
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 1.5e-126 457.2 462 53.0
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 2.5e-126 456.4 464 52.4
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 3.3e-126 456.1 461 54.0
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 9.6e-126 454.5 469 52.2
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 1.6e-125 453.8 458 50.7
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 1.6e-125 453.8 464 53.4
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 2.8e-125 453.0 459 53.2
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 2.8e-125 453.0 476 51.5
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 4.7e-125 452.2 469 51.4
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 6.2e-125 451.8 458 53.1
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 1.8e-124 450.3 458 50.4
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 5.2e-124 448.7 476 50.2
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 6.9e-124 448.4 476 50.0
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 3.4e-123 446.0 446 52.2
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 2.2e-122 443.4 476 50.2
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 3.8e-122 442.6 458 50.2
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 7.1e-121 438.3 458 49.8
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 1.7e-119 433.7 457 50.8
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 1.7e-119 433.7 457 50.8
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 2.3e-119 433.3 458 49.6
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 2.3e-119 433.3 458 49.6
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 5.1e-119 432.2 460 50.0
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 1.9e-118 430.3 432 54.6
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 2.5e-118 429.9 457 49.5
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 3.3e-118 429.5 471 48.8
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 7.3e-118 428.3 467 49.0
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 1.3e-117 427.6 466 48.9
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 1.3e-117 427.6 457 49.2
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.3e-117 427.6 465 51.8
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 2.1e-117 426.8 463 49.9
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 2.1e-117 426.8 460 49.8
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 1.1e-116 424.5 447 50.8
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 1.4e-116 424.1 436 53.9
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 2.4e-116 423.3 434 51.8
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 6.9e-116 421.8 435 51.7
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 1.7e-114 417.2 434 51.6
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 2.2e-114 416.8 459 48.8
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 2.2e-114 416.8 438 52.7
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 4.9e-114 415.6 461 49.0
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 4.9e-114 415.6 460 49.3
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 1.4e-113 414.1 460 47.8
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 3.2e-113 412.9 392 55.6
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 4.2e-113 412.5 461 48.8
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 4.2e-113 412.5 415 52.3
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 9.3e-113 411.4 461 49.2
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 9.3e-113 411.4 461 49.2
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 1.2e-112 411.0 461 47.7
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 1.6e-112 410.6 461 47.9
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 3.9e-111 406.0 459 47.7
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 6.7e-111 405.2 461 46.6
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 6.7e-111 405.2 460 47.8
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 6.7e-111 405.2 463 47.3
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 2.5e-110 403.3 448 50.7
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 4.3e-110 402.5 460 48.3
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 6.2e-109 398.7 429 48.0
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 5.3e-108 395.6 462 47.6
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 6.9e-108 395.2 441 48.1
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 2.9e-106 389.8 402 53.0
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 1.4e-105 387.5 311 64.0
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 1.4e-105 387.5 311 64.0
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 2.9e-98 363.2 414 47.6
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 3.7e-93 346.3 434 44.7
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.2e-89 333.2 475 40.6
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.2e-88 331.3 434 42.6
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.6e-85 320.9 434 41.9
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.1e-84 318.2 434 41.9
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 7.7e-83 312.0 448 42.4
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 3.3e-78 296.6 338 52.1
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 5.7e-78 295.8 452 40.5
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 1.8e-76 290.8 287 53.0
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 6.5e-66 255.8 379 41.4
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 4.5e-59 233.0 195 60.5
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 1.0e-58 231.9 195 60.0
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 2.9e-58 230.3 214 54.7
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 5.2e-55 219.5 206 60.2
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.9e-49 201.1 213 53.1
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 1.6e-43 181.4 161 59.6
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 2.9e-37 160.6 232 43.1
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 8.6e-26 122.5 287 34.1
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 3.3e-25 120.6 271 33.2
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 7.3e-25 119.4 124 45.2
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 1.4e-20 105.1 84 63.1
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 6.6e-18 96.3 80 61.2
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 6.2e-16 89.7 82 58.5
BcaC02g07345 Brassica carinata HOM05D003903 ORTHO05D091390 7.3e-09 66.2 86 43.0


User provided reference genes

Program Settings