Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2014 Punica granatum HOM05D003583 ORTHO05D004169 1.2e-137 493.4 287 100.0
Cfa004159 Carpinus fangiana HOM05D003583 ORTHO05D004169 6.0e-86 321.6 260 69.2
Manes.12G047400 Manihot esculenta HOM05D003583 ORTHO05D004169 1.3e-85 320.5 268 67.9
VMungo1383G2149 Vigna mungo HOM05D003583 ORTHO05D004169 3.9e-85 318.9 260 65.8
COL.COLO4_15618 Corchorus olitorius HOM05D003583 ORTHO05D004169 5.1e-85 318.5 276 64.1
Ciclev10021065m.g Citrus clementina HOM05D003583 ORTHO05D004169 1.1e-84 317.4 270 66.7
Eucgr.K02138 Eucalyptus grandis HOM05D003583 ORTHO05D004169 2.5e-84 316.2 261 75.5
Prupe.8G198900 Prunus persica HOM05D003583 ORTHO05D004169 5.6e-84 315.1 263 73.0
Potri.002G245900 Populus trichocarpa HOM05D003583 ORTHO05D004169 1.6e-83 313.5 267 67.4
THA.LOC104822491 Tarenaya hassleriana HOM05D003583 ORTHO05D004169 4.8e-83 312.0 260 67.7
CANSAT01G0519 Cannabis sativa HOM05D003583 ORTHO05D004169 1.1e-82 310.8 269 72.5
Gohir.D07G205500 Gossypium hirsutum HOM05D003583 ORTHO05D004169 5.3e-82 308.5 276 62.3
Gorai.001G231500 Gossypium raimondii HOM05D003583 ORTHO05D004169 5.3e-82 308.5 276 62.3
MD10G1159800 Malus domestica HOM05D003583 ORTHO05D004169 6.9e-82 308.1 264 68.6
Gohir.A07G199000 Gossypium hirsutum HOM05D003583 ORTHO05D004169 2.0e-81 306.6 276 62.0
Manes.13G049400 Manihot esculenta HOM05D003583 ORTHO05D004169 2.0e-81 306.6 269 68.0
FvH4_2g18540 Fragaria vesca HOM05D003583 ORTHO05D004169 9.9e-81 304.3 261 72.4
Lj1g0010920 Lotus japonicus HOM05D003583 ORTHO05D004169 9.9e-81 304.3 265 63.4
Phvul.008G131301 Phaseolus vulgaris HOM05D003583 ORTHO05D004169 9.9e-81 304.3 263 63.9
MD05G1171600 Malus domestica HOM05D003583 ORTHO05D004169 1.3e-80 303.9 261 73.6
CiPaw.02G023700 Carya illinoinensis HOM05D003583 ORTHO05D004169 3.8e-80 302.4 260 61.5
FAN24G2032 Fragaria x ananassa HOM05D003583 ORTHO05D004169 3.8e-80 302.4 262 72.1
vmacro02783 Vaccinium macrocarpon HOM05D003583 ORTHO05D004169 3.8e-80 302.4 263 65.4
Sabra02G0187200 Salix brachista HOM05D003583 ORTHO05D004169 4.9e-80 302.0 298 62.1
Thecc.01G220200 Theobroma cacao HOM05D003583 ORTHO05D004169 1.9e-79 300.1 280 60.7
Sopen09g022660 Solanum pennellii HOM05D003583 ORTHO05D004169 7.1e-79 298.1 275 61.5
Solyc09g059500.3 Solanum lycopersicum HOM05D003583 ORTHO05D004169 9.3e-79 297.7 275 62.9
TWI36G1542 Tripterygium wilfordii HOM05D003583 ORTHO05D004169 1.6e-78 297.0 265 63.0
Rhsim13G0047800 Rhododendron simsii HOM05D003583 ORTHO05D004169 2.7e-78 296.2 273 66.3
Glyma.18G160200 Glycine max HOM05D003583 ORTHO05D004169 3.5e-78 295.8 263 61.2
Dinv19172 Davidia involucrata HOM05D003583 ORTHO05D004169 4.6e-78 295.4 274 59.9
ClCG07G002090 Citrullus lanatus HOM05D003583 ORTHO05D004169 1.0e-77 294.3 272 62.1
Duzib211G0612 Durio zibethinus HOM05D003583 ORTHO05D004169 1.0e-77 294.3 278 59.7
Lsat_1_v5_gn_5_180820 Lactuca sativa HOM05D003583 ORTHO05D004169 1.0e-77 294.3 261 61.7
RcHm_v2.0_Chr6g0284101 Rosa chinensis HOM05D003583 ORTHO05D004169 1.0e-77 294.3 260 71.2
CSS0028584 Camellia sinensis var. sinensis HOM05D003583 ORTHO05D004169 1.8e-77 293.5 263 63.5
Actinidia39429 Actinidia chinensis HOM05D003583 ORTHO05D004169 2.3e-77 293.1 266 61.3
Cc01_g16710 Coffea canephora HOM05D003583 ORTHO05D004169 2.3e-77 293.1 274 65.3
Duzib138G0093 Durio zibethinus HOM05D003583 ORTHO05D004169 2.3e-77 293.1 279 60.2
FAN27G2245 Fragaria x ananassa HOM05D003583 ORTHO05D004169 3.0e-77 292.7 276 68.5
Glyma.08G348400 Glycine max HOM05D003583 ORTHO05D004169 3.9e-77 292.4 263 60.8
TWI75G1818 Tripterygium wilfordii HOM05D003583 ORTHO05D004169 3.9e-77 292.4 265 62.3
Dinv12649 Davidia involucrata HOM05D003583 ORTHO05D004169 5.1e-77 292.0 271 66.1
Aa31LG5G17810 Aethionema arabicum HOM05D003583 ORTHO05D004169 6.7e-77 291.6 265 66.4
CsaV3_3G030030 Cucumis sativus L. HOM05D003583 ORTHO05D004169 6.7e-77 291.6 273 61.9
arahy.Tifrunner.gnm1.ann1.6L1LF5 Arachis hypogaea HOM05D003583 ORTHO05D004169 8.7e-77 291.2 260 65.4
CAN.G1418.4 Capsicum annuum HOM05D003583 ORTHO05D004169 8.7e-77 291.2 278 62.2
Nitab4.5_0001161g0140 Nicotiana tabacum HOM05D003583 ORTHO05D004169 1.5e-76 290.4 277 63.9
CARHR081870 Cardamine hirsuta HOM05D003583 ORTHO05D004169 1.9e-76 290.0 260 65.0
Lalb_Chr19g0125831 Lupinus albus HOM05D003583 ORTHO05D004169 3.3e-76 289.3 264 66.7
FAN15G2515 Fragaria x ananassa HOM05D003583 ORTHO05D004169 4.3e-76 288.9 276 67.4
Peaxi162Scf00068g02311 Petunia axillaris HOM05D003583 ORTHO05D004169 7.4e-76 288.1 276 59.8
MELO3C022717.2 Cucumis melo HOM05D003583 ORTHO05D004169 9.6e-76 287.7 273 60.8
Oeu030584.1 Olea europaea HOM05D003583 ORTHO05D004169 1.3e-75 287.3 266 61.3
arahy.Tifrunner.gnm1.ann1.SP3ESK Arachis hypogaea HOM05D003583 ORTHO05D004169 1.6e-75 287.0 255 65.5
SalBow3G2553 Salvia bowleyana HOM05D003583 ORTHO05D004169 1.6e-75 287.0 267 65.9
Migut.N00631 Erythranthe guttata HOM05D003583 ORTHO05D004169 2.8e-75 286.2 277 61.0
GSVIVG01003252001 Vitis vinifera HOM05D003583 ORTHO05D004169 6.2e-75 285.0 269 59.9
Hund05577 Selenicereus undatus HOM05D003583 ORTHO05D004169 2.4e-74 283.1 264 64.0
AT3G07220 Arabidopsis thaliana HOM05D003583 ORTHO05D004169 3.1e-74 282.7 261 65.5
Thhalv10004601m.g Eutrema salsugineum HOM05D003583 ORTHO05D004169 3.1e-74 282.7 260 65.8
AL3G18500 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 4.0e-74 282.3 261 63.6
Lalb_Chr03g0041471 Lupinus albus HOM05D003583 ORTHO05D004169 4.0e-74 282.3 269 60.6
DCAR_018637 Daucus carota HOM05D003583 ORTHO05D004169 9.0e-74 281.2 265 63.0
Carub.0003s0675 Capsella rubella HOM05D003583 ORTHO05D004169 1.2e-73 280.8 261 63.6
Thhalv10021140m.g Eutrema salsugineum HOM05D003583 ORTHO05D004169 3.4e-73 279.3 260 66.2
TPR.G6446 Trifolium pratense HOM05D003583 ORTHO05D004169 3.4e-73 279.3 279 65.6
Sed0008761 Sechium edule HOM05D003583 ORTHO05D004169 7.6e-73 278.1 273 60.8
Carub.0003s0679 Capsella rubella HOM05D003583 ORTHO05D004169 1.0e-72 277.7 260 65.0
QL09p051234 Quercus lobata HOM05D003583 ORTHO05D004169 1.3e-72 277.3 344 52.6
SalBow6G5082 Salvia bowleyana HOM05D003583 ORTHO05D004169 1.4e-71 273.9 266 61.7
HanXRQChr01g0015291 Helianthus annuus HOM05D003583 ORTHO05D004169 3.2e-71 272.7 260 59.2
Hma1.2p1_0226F.1_g095390 Hydrangea macrophylla HOM05D003583 ORTHO05D004169 4.2e-71 272.3 266 65.0
SalBow6G4396 Salvia bowleyana HOM05D003583 ORTHO05D004169 5.5e-71 271.9 267 58.1
BraA09t36092Z Brassica rapa HOM05D003583 ORTHO05D004169 7.1e-71 271.6 261 59.8
BcaC04g23769 Brassica carinata HOM05D003583 ORTHO05D004169 1.2e-70 270.8 261 60.9
C09p04880 Brassica napus HOM05D003583 ORTHO05D004169 1.2e-70 270.8 261 60.9
BolC9t53416H Brassica oleracea HOM05D003583 ORTHO05D004169 1.2e-70 270.8 261 60.9
AUR62001132 Chenopodium quinoa HOM05D003583 ORTHO05D004169 1.6e-70 270.4 268 65.3
SGA_v2.0_scaffold3G01637 Striga asiatica HOM05D003583 ORTHO05D004169 4.6e-70 268.9 267 56.9
BcaC05g29745 Brassica carinata HOM05D003583 ORTHO05D004169 6.0e-70 268.5 260 61.9
ECA236G5107 Erigeron canadensis HOM05D003583 ORTHO05D004169 1.0e-69 267.7 266 56.8
Solyc06g083350.3 Solanum lycopersicum HOM05D003583 ORTHO05D004169 2.3e-69 266.5 273 60.4
Sopen06g034720 Solanum pennellii HOM05D003583 ORTHO05D004169 3.0e-69 266.2 273 60.4
HanXRQChr04g0108021 Helianthus annuus HOM05D003583 ORTHO05D004169 3.9e-69 265.8 261 62.1
A09p04570 Brassica napus HOM05D003583 ORTHO05D004169 5.1e-69 265.4 261 61.7
TAR633G0566 Trochodendron aralioides HOM05D003583 ORTHO05D004169 6.7e-69 265.0 273 59.0
TAR362G1106 Trochodendron aralioides HOM05D003583 ORTHO05D004169 8.7e-69 264.6 264 61.7
Lj1A89T66 Lonicera japonica HOM05D003583 ORTHO05D004169 1.1e-68 264.2 260 58.1
vmacro14733 Vaccinium macrocarpon HOM05D003583 ORTHO05D004169 1.5e-68 263.8 260 57.7
PGSC0003DMG400020100 Solanum tuberosum HOM05D003583 ORTHO05D004169 4.3e-68 262.3 275 61.1
HPP92_003545 Vanilla planifolia HOM05D003583 ORTHO05D004169 4.3e-68 262.3 265 57.7
MSTRG.17995 Avicennia marina HOM05D003583 ORTHO05D004169 1.3e-67 260.8 274 62.0
Nitab4.5_0000045g0500 Nicotiana tabacum HOM05D003583 ORTHO05D004169 1.6e-67 260.4 345 53.9
Haze_15252 Corylus avellana HOM05D003583 ORTHO05D004169 2.2e-67 260.0 260 61.2
Rhsim01G0252900 Rhododendron simsii HOM05D003583 ORTHO05D004169 2.2e-67 260.0 258 58.5
BcaB04g19581 Brassica carinata HOM05D003583 ORTHO05D004169 2.8e-67 259.6 260 60.8
Sed0011833 Sechium edule HOM05D003583 ORTHO05D004169 3.7e-67 259.2 261 59.0
ATR0561G144 Amborella trichopoda HOM05D003583 ORTHO05D004169 8.2e-67 258.1 269 57.2
Nitab4.5_0003020g0040 Nicotiana tabacum HOM05D003583 ORTHO05D004169 2.4e-66 256.5 269 61.7
AL3G18560 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 9.0e-66 254.6 276 59.4
A05p40990 Brassica napus HOM05D003583 ORTHO05D004169 9.0e-66 254.6 260 62.3
Sc05g0001940 Simmondsia chinensis HOM05D003583 ORTHO05D004169 9.0e-66 254.6 260 64.6
unitig_0.g373 Utricularia gibba HOM05D003583 ORTHO05D004169 3.4e-65 252.7 277 56.3
C05p60140 Brassica napus HOM05D003583 ORTHO05D004169 5.9e-65 251.9 260 63.1
EL10Ac7g17902 Beta vulgaris HOM05D003583 ORTHO05D004169 1.7e-64 250.4 285 61.4
SGA_v2.0_scaffold6G03502 Striga asiatica HOM05D003583 ORTHO05D004169 5.0e-64 248.8 260 66.5
Gohir.D08G212800 Gossypium hirsutum HOM05D003583 ORTHO05D004169 1.9e-63 246.9 253 54.9
Zm00001eb036350 Zea mays HOM05D003583 ORTHO05D004169 2.5e-63 246.5 260 52.7
Sp3g06180 Schrenkiella parvula HOM05D003583 ORTHO05D004169 3.2e-63 246.1 258 53.5
Os08g0528900 Oryza sativa ssp. japonica HOM05D003583 ORTHO05D004169 1.6e-62 243.8 260 53.5
BraA05t22826Z Brassica rapa HOM05D003583 ORTHO05D004169 2.7e-62 243.0 251 62.9
BcaC05g29851 Brassica carinata HOM05D003583 ORTHO05D004169 3.6e-62 242.7 253 62.1
BolC5t34665H Brassica oleracea HOM05D003583 ORTHO05D004169 3.9e-61 239.2 251 61.8
Aqoxy5G00027 Aquilegia oxysepala HOM05D003583 ORTHO05D004169 1.1e-60 237.7 280 59.3
Nitab4.5_0013864g0010 Nicotiana tabacum HOM05D003583 ORTHO05D004169 1.1e-60 237.7 260 52.3
CAN.G874.6 Capsicum annuum HOM05D003583 ORTHO05D004169 2.0e-60 236.9 275 61.8
PSO063G4910 Papaver somniferum HOM05D003583 ORTHO05D004169 2.4e-58 229.9 263 58.2
PSO017G0014 Papaver somniferum HOM05D003583 ORTHO05D004169 4.1e-58 229.2 263 55.9
Gohir.A08G195500 Gossypium hirsutum HOM05D003583 ORTHO05D004169 3.4e-57 226.1 272 50.4
AUR62016547 Chenopodium quinoa HOM05D003583 ORTHO05D004169 1.7e-56 223.8 260 50.0
Actinidia30051 Actinidia chinensis HOM05D003583 ORTHO05D004169 1.4e-55 220.7 152 75.0
SEGI_31201 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 4.2e-55 219.2 266 54.9
Nn1g07991 Nelumbo nucifera HOM05D003583 ORTHO05D004169 1.1e-52 211.1 124 81.5
Ca_03474_v3 Cicer arietinum L. HOM05D003583 ORTHO05D004169 2.6e-52 209.9 128 79.7
MBI11_g07418_MAGBIO Magnolia biondii HOM05D003583 ORTHO05D004169 1.3e-51 207.6 125 80.0
SEGI_22924 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 1.7e-51 207.2 261 45.6
Nn3g20050 Nelumbo nucifera HOM05D002516 ORTHO05D002703 3.7e-51 206.1 125 78.4
Medtr7g055863 Medicago truncatula HOM05D003583 ORTHO05D004169 1.4e-50 204.1 123 81.3
Sp2g19040 Schrenkiella parvula HOM05D003583 ORTHO05D004169 3.1e-50 203.0 125 79.2
CDE06G0189 Ceratophyllum demersum HOM05D003583 ORTHO05D004169 3.8e-48 196.1 229 52.4
Cpa.g.sc34.102 Carica papaya HOM05D003583 ORTHO05D004169 6.5e-48 195.3 232 55.2
CDE06G1446 Ceratophyllum demersum HOM05D003583 ORTHO05D004169 1.8e-45 187.2 125 75.2
Lalb_Chr03g0041461 Lupinus albus HOM05D003583 ORTHO05D004169 9.7e-44 181.4 268 41.8
PGR044G2612 Punica granatum HOM05D003583 ORTHO05D004169 2.8e-43 179.9 137 87.6
Psat3g148960 Pisum sativum HOM05D003583 ORTHO05D004169 1.8e-42 177.2 201 63.7
Os11g0463600 Oryza sativa ssp. japonica HOM05D003583 ORTHO05D004169 3.5e-41 172.9 244 42.2
Atru.chr6.1424 Acer truncatum HOM05D003583 ORTHO05D004169 5.0e-40 169.1 192 56.2
Gorai.004G226900 Gossypium raimondii HOM05D003583 ORTHO05D004169 1.1e-39 167.9 213 48.8
HPP92_008214 Vanilla planifolia HOM05D003583 ORTHO05D004169 1.0e-37 161.4 243 42.4
Zm00001eb169940 Zea mays HOM05D003583 ORTHO05D004169 1.8e-37 160.6 244 45.1
Lalb_Chr19g0125851 Lupinus albus HOM05D003583 ORTHO05D004169 7.0e-34 148.7 109 62.4
Mapoly0037s0072 Marchantia polymorpha HOM05D003583 ORTHO05D004169 5.9e-33 145.6 260 43.8
Os09g0505200 Oryza sativa ssp. japonica HOM05D003583 ORTHO05D004169 1.2e-22 111.3 248 34.3
SMO166G0009 Selaginella moellendorffii HOM05D003583 ORTHO05D004169 6.1e-22 109.0 265 32.1
Pp3c23_3920 Physcomitrium patens HOM05D003583 ORTHO05D004169 8.0e-22 108.6 261 32.6
AT3G07260 Arabidopsis thaliana HOM05D003583 ORTHO05D004169 3.0e-21 106.7 160 51.2
BcaB08g36000 Brassica carinata HOM05D003583 ORTHO05D004169 3.0e-21 106.7 62 71.0
Ca_03475_v3 Cicer arietinum L. HOM05D003583 ORTHO05D004169 1.2e-20 104.8 128 53.1
Zm00001eb115380 Zea mays HOM05D003583 ORTHO05D004169 3.4e-20 103.2 114 41.2
Rhsim01G0253000 Rhododendron simsii HOM05D003583 ORTHO05D004169 1.3e-19 101.3 60 80.0
Oeu057861.1 Olea europaea HOM05D003583 ORTHO05D004169 1.7e-19 100.9 89 65.2
SMO115G0166 Selaginella moellendorffii HOM05D003583 ORTHO05D004169 3.7e-19 99.8 260 42.3
AL4G16370 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 8.3e-19 98.6 157 44.6
Pp3c24_8070 Physcomitrium patens HOM05D003583 ORTHO05D004169 1.4e-18 97.8 258 37.2
Pp3c23_9360 Physcomitrium patens HOM05D003583 ORTHO05D004169 1.8e-18 97.4 266 30.5
unitig_60.g25602 Utricularia gibba HOM05D003583 ORTHO05D004169 2.4e-18 97.1 181 42.5
Pp3c20_16530 Physcomitrium patens HOM05D003583 ORTHO05D004169 5.9e-17 92.4 265 28.7
Medtr7g055873 Medicago truncatula HOM05D003583 ORTHO05D004169 1.5e-15 87.8 126 49.2
Gohir.A04G076300 Gossypium hirsutum HOM05D003583 ORTHO05D004169 2.5e-15 87.0 53 77.4
MBI11_g07419_MAGBIO Magnolia biondii HOM05D003583 ORTHO05D004169 5.6e-15 85.9 60 75.0
Nn7g37781 Nelumbo nucifera HOM05D003583 ORTHO05D004169 7.3e-15 85.5 249 32.1
Nn6g33306 Nelumbo nucifera HOM05D003583 ORTHO05D004169 1.6e-14 84.3 235 37.0
SHI46266 Sapria himalayana HOM05D003583 ORTHO05D004169 3.6e-14 83.2 49 77.6
SHI46763 Sapria himalayana HOM05D003583 ORTHO05D004169 3.6e-14 83.2 49 77.6
Oeu009710.1 Olea europaea HOM05D003583 ORTHO05D004169 8.9e-13 78.6 95 50.5
Nn2g10533 Nelumbo nucifera HOM05D003583 ORTHO05D004169 2.9e-11 73.6 183 32.8
unitig_749.g13590 Utricularia gibba HOM05D003583 ORTHO05D004169 1.1e-10 71.6 47 70.2
RcHm_v2.0_Chr5g0045161 Rosa chinensis HOM05D003583 ORTHO05D004169 5.4e-10 69.3 47 63.8
RcHm_v2.0_Chr5g0045171 Rosa chinensis HOM05D003583 ORTHO05D004169 5.4e-10 69.3 47 63.8
RcHm_v2.0_Chr1g0319631 Rosa chinensis HOM05D003583 ORTHO05D004169 4.6e-09 66.2 47 63.8
Lalb_Chr19g0125841 Lupinus albus HOM05D003583 ORTHO05D004169 1.7e-08 64.3 52 53.8
Nn5g31016 Nelumbo nucifera HOM05D003583 ORTHO05D004169 2.3e-08 63.9 83 49.4
Oeu029228.1 Olea europaea HOM05D001181 ORTHO05D001678 2.3e-08 63.9 40 72.5
RcHm_v2.0_Chr6g0245631 Rosa chinensis HOM05D003583 ORTHO05D004169 3.9e-08 63.2 47 59.6
SEGI_31438 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 5.0e-08 62.8 38 73.7
Lalb_Chr07g0194191 Lupinus albus HOM05D003583 ORTHO05D004169 1.5e-07 61.2 37 73.0
CBR_g31665 Chara braunii HOM05D003583 ORTHO05D004169 1.9e-07 60.8 353 23.2
Nn2g10235 Nelumbo nucifera HOM05D003583 ORTHO05D004169 9.5e-07 58.5 88 46.6
AagrBONN_evm.TU.Sc2ySwM_362.2525 Anthoceros agrestis HOM05D003583 ORTHO05D004169 2.1e-06 57.4 200 27.5
Nn8g40493 Nelumbo nucifera HOM05D003583 ORTHO05D004169 2.1e-06 57.4 88 45.5


User provided reference genes

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