Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 2.7e-253 878.2 456 100.0
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 4.1e-169 598.6 458 69.2
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 3.3e-147 525.8 477 62.1
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 9.7e-147 524.2 475 58.9
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 6.3e-146 521.5 470 60.0
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 1.4e-145 520.4 465 59.8
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 2.4e-145 519.6 470 60.2
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 1.6e-144 516.9 463 62.2
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 2.6e-144 516.2 465 61.9
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 5.9e-144 515.0 463 62.0
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 2.9e-143 512.7 470 59.4
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 2.5e-142 509.6 461 59.7
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 4.2e-142 508.8 475 56.6
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 4.7e-141 505.4 460 59.1
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 3.0e-140 502.7 460 60.4
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 5.2e-140 501.9 472 60.2
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 1.2e-139 500.7 462 59.3
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 3.3e-139 499.2 474 57.4
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 9.7e-139 497.7 472 58.7
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 1.7e-138 496.9 476 55.5
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 3.1e-137 492.7 476 60.7
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 7.0e-137 491.5 469 59.7
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 9.1e-137 491.1 462 60.0
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 3.8e-135 485.7 470 59.1
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 3.8e-135 485.7 472 56.6
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 5.0e-135 485.3 465 58.7
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 5.0e-135 485.3 465 58.7
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 5.0e-135 485.3 472 58.7
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 5.0e-135 485.3 478 57.1
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 1.5e-134 483.8 473 58.8
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 5.5e-134 481.9 474 58.6
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 7.2e-134 481.5 470 58.1
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 6.1e-133 478.4 465 54.0
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 2.3e-132 476.5 472 59.1
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 8.8e-132 474.6 472 58.1
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 1.5e-131 473.8 466 57.1
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 7.5e-131 471.5 465 57.4
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 1.3e-130 470.7 471 56.5
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 2.8e-130 469.5 479 54.9
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 6.3e-130 468.4 472 58.1
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 6.3e-130 468.4 472 57.6
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 4.1e-129 465.7 465 56.8
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 4.1e-129 465.7 467 57.0
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.6e-128 463.8 467 57.0
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 1.6e-128 463.8 469 55.9
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.7e-128 463.0 464 57.3
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 3.5e-128 462.6 467 55.0
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.0e-127 461.1 477 55.6
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 5.0e-127 458.8 480 55.4
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 5.0e-127 458.8 460 57.4
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 6.5e-127 458.4 465 55.7
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 8.6e-127 458.0 474 53.8
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 1.5e-126 457.2 473 56.0
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 2.5e-126 456.4 471 54.4
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 6.8e-124 448.4 596 46.0
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.2e-123 447.6 466 55.4
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 2.8e-122 443.0 460 55.9
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 6.3e-122 441.8 460 55.7
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 3.1e-121 439.5 467 53.3
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 4.1e-121 439.1 460 56.1
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.3e-119 434.1 428 58.2
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 3.8e-119 432.6 466 53.9
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 3.4e-115 419.5 471 53.7
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 2.9e-114 416.4 541 47.3
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 4.9e-114 415.6 462 54.1
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 8.3e-114 414.8 467 52.7
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 1.1e-113 414.5 500 50.0
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 3.2e-113 412.9 481 50.7
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 5.4e-113 412.1 481 51.1
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 2.0e-112 410.2 479 51.1
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 2.7e-112 409.8 477 52.0
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 4.3e-110 402.5 478 52.5
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 6.2e-109 398.7 481 51.1
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 1.4e-108 397.5 478 50.2
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 2.3e-108 396.7 469 48.4
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 2.0e-107 393.7 502 46.4
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 3.4e-107 392.9 469 50.3
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 7.5e-107 391.7 473 50.3
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 1.3e-106 391.0 453 50.1
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 1.7e-106 390.6 454 50.4
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 1.7e-106 390.6 348 57.5
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 2.9e-106 389.8 487 48.0
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 3.7e-106 389.4 472 49.6
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 3.7e-106 389.4 471 48.8
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 4.9e-106 389.0 468 51.7
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 1.4e-105 387.5 479 50.1
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 1.9e-105 387.1 473 49.3
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 7.0e-105 385.2 471 49.7
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 9.2e-105 384.8 471 49.7
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 1.2e-104 384.4 455 49.2
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 1.2e-104 384.4 399 53.4
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 2.7e-104 383.3 475 50.1
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 6.0e-104 382.1 455 49.0
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 7.8e-104 381.7 464 47.6
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 7.8e-104 381.7 445 49.4
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 3.9e-103 379.4 530 46.4
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 3.9e-103 379.4 472 47.9
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 6.6e-103 378.6 462 48.5
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 8.6e-103 378.3 462 48.1
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 4.3e-102 375.9 463 48.8
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 9.5e-102 374.8 447 48.5
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 2.8e-101 373.2 471 48.4
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 1.1e-100 371.3 461 47.9
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 1.4e-100 370.9 470 47.7
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 1.8e-100 370.5 458 48.7
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 1.8e-100 370.5 471 48.6
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 3.1e-100 369.8 456 48.5
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 5.2e-100 369.0 483 47.2
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 6.8e-100 368.6 430 50.5
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.2e-99 367.9 451 47.9
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 1.5e-99 367.5 363 58.7
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 2.6e-99 366.7 456 48.9
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 3.4e-99 366.3 460 48.0
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 2.9e-98 363.2 462 48.5
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 1.1e-97 361.3 485 44.7
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 1.1e-97 361.3 459 48.4
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 3.5e-96 356.3 467 48.0
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.7e-95 354.0 465 46.9
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 1.1e-94 351.3 462 47.2
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 2.5e-94 350.1 371 56.9
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 3.6e-93 346.3 466 45.7
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 8.1e-93 345.1 463 47.3
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 1.1e-92 344.7 451 47.2
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 4.0e-92 342.8 436 47.2
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 2.0e-91 340.5 454 46.9
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 2.3e-87 327.0 315 56.5
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 5.6e-86 322.4 369 47.2
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 7.3e-86 322.0 360 49.4
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 2.1e-85 320.5 280 58.6
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 2.4e-84 317.0 480 43.1
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 3.1e-84 316.6 357 48.7
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 2.6e-83 313.5 375 51.7
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.9e-81 307.4 444 47.5
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 2.7e-80 303.5 422 45.5
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 3.5e-80 303.1 348 50.6
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 1.1e-78 298.1 438 44.1
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 9.9e-75 285.0 356 46.1
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 1.2e-72 278.1 359 43.5
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 1.6e-72 277.7 363 43.8
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 1.3e-71 274.6 423 41.8
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 3.9e-71 273.1 309 49.2
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 2.5e-70 270.4 371 46.1
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 3.4e-67 260.0 237 59.1
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 4.5e-67 259.6 207 63.3
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 1.2e-64 251.5 452 36.3
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 5.6e-62 242.7 387 38.5
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.4e-60 237.3 314 41.7
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 3.1e-60 236.9 309 43.0
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 4.0e-60 236.5 314 41.7
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 7.1e-57 225.7 336 43.2
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 9.3e-57 225.3 387 39.5
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 1.6e-56 224.6 458 35.4
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.0e-55 221.9 301 40.9
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 5.7e-54 216.1 341 38.4
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 5.7e-54 216.1 145 69.7
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 9.7e-54 215.3 354 42.7
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 6.1e-48 196.1 271 43.5
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 3.9e-47 193.4 195 53.8
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 5.1e-47 193.0 322 38.2
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 3.3e-46 190.3 238 45.8
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 4.3e-46 189.9 259 45.6
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 9.7e-46 188.7 312 39.1
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 1.8e-44 184.5 229 46.3
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 3.5e-35 153.7 137 54.7
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 1.3e-34 151.8 103 69.9
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 1.4e-28 131.7 213 40.8
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 4.2e-25 120.2 191 42.9
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 1.6e-24 118.2 77 72.7
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 1.6e-24 118.2 107 56.1
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.2e-22 112.1 81 66.7
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 3.3e-22 110.5 197 36.5
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.3e-21 108.6 183 40.4
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 1.4e-20 105.1 194 36.1
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 2.5e-17 94.4 129 43.4
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 3.2e-17 94.0 135 42.2
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 2.3e-15 87.8 87 52.9
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 9.8e-14 82.4 62 64.5
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 2.3e-07 61.2 53 56.6
BcaC01g00775 Brassica carinata HOM05D056010 ORTHO05D039557 5.7e-06 56.6 34 76.5


User provided reference genes

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