Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 1.8e-168 595.9 309 100.0
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 6.6e-131 471.1 309 75.7
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 5.2e-128 461.5 306 74.8
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 6.8e-128 461.1 309 74.1
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 8.9e-128 460.7 309 72.8
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 3.4e-127 458.8 308 72.7
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 5.8e-127 458.0 309 72.8
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 4.2e-125 451.8 307 71.7
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 9.3e-125 450.7 299 71.6
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 1.2e-124 450.3 309 71.5
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 1.6e-124 449.9 309 70.9
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 2.1e-124 449.5 309 72.2
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 2.7e-124 449.1 301 71.1
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 7.8e-124 447.6 309 70.2
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 7.8e-124 447.6 301 71.4
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 7.8e-124 447.6 301 71.4
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 1.0e-123 447.2 307 71.3
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 1.0e-123 447.2 309 70.9
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.3e-123 446.0 309 70.2
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 3.0e-123 445.7 309 70.2
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 3.0e-123 445.7 309 70.2
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 5.1e-123 444.9 309 72.8
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 2.5e-122 442.6 310 71.3
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 2.5e-122 442.6 312 69.6
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 7.3e-122 441.0 301 70.4
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 7.3e-122 441.0 309 70.9
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 1.3e-121 440.3 310 69.4
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 1.6e-121 439.9 307 70.4
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 2.8e-121 439.1 301 71.4
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 3.6e-121 438.7 309 70.6
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 6.2e-121 438.0 306 70.6
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.4e-120 436.8 301 69.1
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 1.4e-120 436.8 309 70.9
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.8e-120 436.4 301 69.4
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 2.4e-120 436.0 309 68.3
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 3.1e-120 435.6 303 69.6
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 3.1e-120 435.6 302 71.2
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 9.0e-120 434.1 301 69.1
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 1.2e-119 433.7 301 71.8
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.5e-119 433.3 312 69.6
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 1.5e-119 433.3 312 69.2
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 2.6e-119 432.6 308 70.8
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 3.4e-119 432.2 309 70.6
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 5.8e-119 431.4 301 70.8
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 5.8e-119 431.4 344 65.1
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 7.6e-119 431.0 313 70.0
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 7.6e-119 431.0 309 69.9
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 9.9e-119 430.6 305 70.5
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 1.3e-118 430.3 299 70.6
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 1.7e-118 429.9 309 70.9
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 1.7e-118 429.9 301 70.1
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 3.8e-118 428.7 311 69.8
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 8.4e-118 427.6 309 67.6
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 7.1e-117 424.5 308 68.8
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 9.3e-117 424.1 309 68.9
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 1.6e-116 423.3 302 69.2
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 1.6e-116 423.3 340 65.6
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.3e-115 420.2 310 67.7
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.7e-115 419.9 304 69.4
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 1.7e-115 419.9 301 69.8
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 2.3e-115 419.5 313 67.7
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 2.5e-114 416.0 301 68.8
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 2.5e-114 416.0 303 68.3
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 3.3e-114 415.6 308 66.9
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 4.3e-114 415.2 311 67.5
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 5.6e-114 414.8 285 71.9
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 5.6e-114 414.8 308 68.2
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 1.3e-113 413.7 299 68.2
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 1.3e-113 413.7 301 69.1
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 1.3e-113 413.7 309 68.6
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 1.6e-113 413.3 297 69.0
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 1.6e-113 413.3 298 70.1
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 2.1e-113 412.9 301 68.4
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 2.1e-113 412.9 299 67.9
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 3.6e-113 412.1 309 68.3
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 3.6e-113 412.1 357 60.5
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 3.6e-113 412.1 311 67.5
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 4.8e-113 411.8 301 67.8
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 8.1e-113 411.0 305 68.2
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 8.1e-113 411.0 382 56.0
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 1.1e-112 410.6 311 66.6
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 2.4e-112 409.5 298 68.8
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 3.1e-112 409.1 296 67.6
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 3.1e-112 409.1 299 67.2
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 4.0e-112 408.7 301 68.1
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 4.0e-112 408.7 289 69.9
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 5.3e-112 408.3 306 68.0
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 6.9e-112 407.9 305 67.2
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 9.0e-112 407.5 311 65.9
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 9.0e-112 407.5 298 67.4
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 9.0e-112 407.5 301 67.8
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 9.0e-112 407.5 295 67.5
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 1.2e-111 407.1 301 67.4
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 1.5e-111 406.8 301 66.8
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 1.5e-111 406.8 308 64.9
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 2.6e-111 406.0 267 70.8
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 3.4e-111 405.6 347 60.2
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 4.5e-111 405.2 307 66.4
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 4.5e-111 405.2 309 66.0
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 7.6e-111 404.4 307 66.1
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 7.6e-111 404.4 295 67.1
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 3.8e-110 402.1 302 65.2
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 3.8e-110 402.1 300 66.0
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 1.1e-109 400.6 289 68.2
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 2.4e-109 399.4 346 60.4
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.2e-108 397.1 302 65.9
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 1.2e-108 397.1 295 65.4
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 3.5e-108 395.6 315 66.3
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 6.0e-108 394.8 312 64.1
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 1.8e-107 393.3 275 69.5
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 5.1e-107 391.7 293 65.5
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 3.3e-106 389.0 301 65.1
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 1.6e-105 386.7 310 63.5
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 1.6e-105 386.7 295 65.1
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 2.8e-105 386.0 306 63.4
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 4.8e-105 385.2 315 64.4
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 4.0e-104 382.1 265 69.8
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 6.9e-104 381.3 259 72.2
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 2.6e-103 379.4 313 61.0
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 4.5e-103 378.6 299 63.9
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.0e-102 377.5 257 69.3
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 1.7e-102 376.7 274 67.5
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 1.6e-100 370.2 298 62.1
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 2.1e-100 369.8 304 62.5
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 2.1e-100 369.8 306 63.7
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 2.7e-100 369.4 305 59.0
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 3.7e-97 359.0 286 63.6
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 2.2e-94 349.7 229 73.4
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 4.3e-90 335.5 271 62.0
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 2.6e-87 326.2 292 55.5
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 3.0e-83 312.8 230 66.5
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 5.7e-82 308.5 290 53.4
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 7.4e-82 308.1 294 53.4
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 6.9e-80 301.6 277 54.2
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 1.0e-78 297.7 301 51.8
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 2.7e-76 289.7 277 52.3
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 6.1e-76 288.5 280 51.4
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 3.9e-75 285.8 266 54.9
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 3.3e-74 282.7 296 54.7
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 9.7e-74 281.2 277 49.8
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 6.3e-73 278.5 294 48.0
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 8.2e-73 278.1 277 53.1
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 2.5e-69 266.5 227 59.5
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 2.7e-68 263.1 203 65.5
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 3.7e-65 252.7 327 49.8
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.1e-64 251.1 231 51.9
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 2.1e-60 236.9 195 64.1
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 3.1e-56 223.0 214 57.0
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 7.7e-55 218.4 210 51.4
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 1.0e-54 218.0 183 59.6
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 6.5e-54 215.3 188 58.0
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 2.5e-53 213.4 216 49.1
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 1.4e-51 207.6 148 65.5
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 1.3e-46 191.0 296 36.5
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 8.6e-46 188.3 149 61.1
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 8.6e-38 161.8 150 54.7
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 1.3e-33 147.9 302 33.8
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 4.6e-31 139.4 312 29.5
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 3.6e-28 129.8 108 63.9
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 3.7e-25 119.8 210 35.2
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 4.6e-23 112.8 112 50.9
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 7.8e-23 112.1 76 69.7
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 1.0e-22 111.7 214 29.0
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 2.3e-22 110.5 129 49.6
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 7.3e-21 105.5 296 29.7
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.1e-13 81.6 184 37.0
unitig_747.g21459 Utricularia gibba HOM05D001952 ORTHO05D005047 4.9e-09 66.2 52 59.6
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 8.4e-09 65.5 58 51.7


User provided reference genes

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