Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 4.8e-140 501.1 251 100.0
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 6.0e-82 308.1 235 66.8
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 3.7e-79 298.9 243 63.4
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 8.1e-79 297.7 240 65.4
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 7.6e-77 291.2 243 63.0
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 1.0e-76 290.8 243 62.1
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 2.2e-76 289.7 243 62.1
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 6.5e-76 288.1 243 61.7
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 8.4e-76 287.7 239 62.3
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 8.4e-76 287.7 224 65.2
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 5.5e-75 285.0 235 65.1
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 5.5e-75 285.0 234 64.5
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 9.3e-75 284.3 250 60.0
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 1.0e-73 280.8 230 64.3
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 2.3e-73 279.6 225 65.8
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 8.7e-73 277.7 231 65.4
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 1.1e-72 277.3 234 61.5
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 1.1e-72 277.3 225 64.0
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 3.3e-72 275.8 227 64.8
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 5.7e-72 275.0 226 63.7
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 3.7e-71 272.3 226 63.3
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 3.7e-71 272.3 215 63.7
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 1.1e-70 270.8 259 56.4
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 1.4e-70 270.4 233 60.9
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 6.9e-70 268.1 230 61.3
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 6.9e-70 268.1 222 63.1
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 1.2e-69 267.3 227 62.1
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 1.2e-69 267.3 237 59.1
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 2.0e-69 266.5 223 62.3
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 1.7e-68 263.5 230 60.0
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 1.7e-68 263.5 260 57.3
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 2.2e-68 263.1 241 60.6
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 2.9e-68 262.7 220 62.3
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 3.8e-68 262.3 231 61.5
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 6.5e-68 261.5 248 57.7
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 8.4e-68 261.2 229 58.1
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 8.4e-68 261.2 239 59.4
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 8.4e-68 261.2 225 61.3
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 1.1e-67 260.8 225 60.9
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 1.4e-67 260.4 237 59.5
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 1.9e-67 260.0 235 60.0
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 3.2e-67 259.2 222 62.6
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 4.2e-67 258.8 231 61.0
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 4.2e-67 258.8 231 61.0
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 4.2e-67 258.8 229 57.6
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 4.2e-67 258.8 242 57.4
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 5.5e-67 258.5 231 60.6
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 5.5e-67 258.5 227 59.5
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 5.5e-67 258.5 254 56.7
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 9.3e-67 257.7 237 59.5
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 1.2e-66 257.3 233 59.7
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 1.2e-66 257.3 231 61.0
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 1.6e-66 256.9 221 62.4
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 1.6e-66 256.9 231 60.6
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 2.1e-66 256.5 228 61.0
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 2.1e-66 256.5 223 61.0
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 3.5e-66 255.8 231 60.6
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 3.5e-66 255.8 231 60.6
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 4.6e-66 255.4 229 60.3
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 4.6e-66 255.4 226 60.2
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 7.9e-66 254.6 228 61.4
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 1.0e-65 254.2 231 60.2
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 1.0e-65 254.2 227 57.7
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 1.3e-65 253.8 231 58.9
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 1.3e-65 253.8 242 57.4
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 1.8e-65 253.4 234 56.0
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 3.0e-65 252.7 228 58.8
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 6.7e-65 251.5 224 58.5
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 8.7e-65 251.1 238 57.6
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 2.5e-64 249.6 252 53.6
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 7.4e-64 248.1 231 57.1
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 9.7e-64 247.7 269 50.6
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 1.3e-63 247.3 232 58.2
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 1.6e-63 246.9 290 50.3
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 1.6e-63 246.9 221 59.3
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 1.6e-63 246.9 227 56.4
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 2.8e-63 246.1 151 76.2
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 3.7e-63 245.7 231 56.7
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 3.7e-63 245.7 231 56.7
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 4.8e-63 245.4 223 56.5
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 4.8e-63 245.4 216 60.2
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 8.2e-63 244.6 210 60.0
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 1.4e-62 243.8 237 56.1
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 2.4e-62 243.0 213 58.2
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 3.1e-62 242.7 237 55.3
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 5.3e-62 241.9 222 59.0
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 5.3e-62 241.9 216 55.6
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 6.9e-62 241.5 230 58.7
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 2.0e-61 240.0 252 50.4
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 2.6e-61 239.6 234 57.3
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 3.4e-61 239.2 231 53.7
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 5.9e-61 238.4 146 77.4
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 1.7e-60 236.9 238 56.3
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 1.7e-60 236.9 217 57.1
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 1.1e-59 234.2 207 62.3
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 1.4e-59 233.8 247 53.8
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 2.7e-58 229.6 205 60.0
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 6.1e-58 228.4 176 63.6
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 1.0e-57 227.6 162 66.7
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 5.7e-56 221.9 210 57.1
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 7.4e-56 221.5 221 54.8
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 2.8e-55 219.5 254 49.6
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 3.2e-51 206.1 150 65.3
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 4.7e-50 202.2 145 66.9
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 3.3e-48 196.1 147 63.3
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 4.4e-48 195.7 225 49.8
Mapoly0003s0025 Marchantia polymorpha HOM05D005904 ORTHO05D007074 1.6e-45 187.2 220 48.2
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 1.6e-45 187.2 188 51.6
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 1.3e-44 184.1 148 59.5
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 1.7e-44 183.7 193 52.8
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 5.5e-43 178.7 232 47.8
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 1.8e-41 173.7 167 58.1
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 8.8e-41 171.4 142 59.2
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 3.3e-40 169.5 172 55.2
CBR_g18726 Chara braunii HOM05D005904 ORTHO05D007074 1.3e-39 167.5 136 56.6
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 1.3e-39 167.5 113 69.9
SMO134G0002 Selaginella moellendorffii HOM05D005904 ORTHO05D007074 1.4e-38 164.1 132 57.6
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 7.0e-38 161.8 145 60.0
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 4.5e-37 159.1 185 49.2
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 3.1e-30 136.3 137 54.7
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 3.5e-29 132.9 68 83.8
Sopen03g040340 Solanum pennellii HOM05D005904 ORTHO05D007074 6.5e-28 128.6 97 67.0
FAN17G1021 Fragaria x ananassa HOM05D005904 ORTHO05D007074 1.1e-27 127.9 87 67.8
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 1.2e-26 124.4 57 96.5
CSS0024966 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 8.6e-20 101.7 128 46.1
MCO11G030 Micromonas commoda HOM05D005904 ORTHO05D007074 4.0e-17 92.8 176 34.7
TPR.G6604 Trifolium pratense HOM05D005904 ORTHO05D007074 4.4e-16 89.4 75 58.7
CSS0026651 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 1.8e-14 84.0 55 70.9
Potri.003G038400 Populus trichocarpa HOM05D005904 ORTHO05D007074 3.2e-14 83.2 100 47.0
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 6.2e-10 68.9 36 86.1
SGA_v2.0_scaffold71G23779 Striga asiatica HOM05D005904 ORTHO05D007074 8.3e-07 58.5 224 28.6
MCO01G154 Micromonas commoda HOM05D005904 ORTHO05D268674 7.0e-06 55.5 128 29.7


User provided reference genes

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