Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1944 Punica granatum HOM05D006499 ORTHO05D007874 8.1e-77 290.4 156 100.0
GSVIVG01026240001 Vitis vinifera HOM05D006499 ORTHO05D007874 6.7e-23 111.3 114 57.0
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 1.5e-22 110.2 159 45.9
SHI02178 Sapria himalayana HOM05D006499 ORTHO05D007874 5.7e-22 108.2 100 59.0
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 7.4e-22 107.8 145 46.9
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 1.7e-21 106.7 159 45.3
FAN07G1092 Fragaria x ananassa HOM05D006499 ORTHO05D007874 2.2e-21 106.3 161 45.3
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 2.8e-21 105.9 159 44.7
Potri.003G003300 Populus trichocarpa HOM05D006499 ORTHO05D007874 4.8e-21 105.1 160 44.4
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 6.3e-21 104.8 159 44.7
Lj6P712T24 Lonicera japonica HOM05D006499 ORTHO05D007874 6.3e-21 104.8 159 42.8
Lj6P717T75 Lonicera japonica HOM05D006499 ORTHO05D007874 6.3e-21 104.8 159 42.8
RcHm_v2.0_Chr4g0446811 Rosa chinensis HOM05D006499 ORTHO05D007874 8.2e-21 104.4 160 43.8
Psat6g099520 Pisum sativum HOM05D006499 ORTHO05D007874 1.1e-20 104.0 159 44.0
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 1.8e-20 103.2 159 42.8
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 3.1e-20 102.4 159 42.8
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 3.1e-20 102.4 158 41.8
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 3.1e-20 102.4 158 43.7
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 4.1e-20 102.1 160 42.5
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 4.1e-20 102.1 147 42.2
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 4.1e-20 102.1 145 44.8
Lalb_Chr04g0258971 Lupinus albus HOM05D006499 ORTHO05D007874 5.3e-20 101.7 159 43.4
MD16G1003500 Malus domestica HOM05D006499 ORTHO05D007874 5.3e-20 101.7 161 42.2
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 5.3e-20 101.7 158 43.7
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 7.0e-20 101.3 158 43.0
COL.COLO4_06169 Corchorus olitorius HOM05D006499 ORTHO05D007874 9.1e-20 100.9 147 42.2
FAN12G4256 Fragaria x ananassa HOM05D006499 ORTHO05D007874 1.2e-19 100.5 161 42.9
Medtr1g038530 Medicago truncatula HOM05D006499 ORTHO05D007874 1.2e-19 100.5 159 43.4
Rhsim05G0006600 Rhododendron simsii HOM05D006499 ORTHO05D007874 1.5e-19 100.1 145 42.8
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 1.5e-19 100.1 158 42.4
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 1.5e-19 100.1 159 42.8
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 2.0e-19 99.8 160 41.9
Glyma.09G283200 Glycine max HOM05D006499 ORTHO05D007874 2.0e-19 99.8 145 44.8
Oeu012342.1 Olea europaea HOM05D006499 ORTHO05D007874 2.0e-19 99.8 144 44.4
CARHR190310 Cardamine hirsuta HOM05D006499 ORTHO05D007874 2.6e-19 99.4 160 41.2
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 2.6e-19 99.4 144 45.1
arahy.Tifrunner.gnm1.ann1.U0P7JC Arachis hypogaea HOM05D000717 ORTHO05D000555 3.5e-19 99.0 160 42.5
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 3.5e-19 99.0 159 41.5
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 3.5e-19 99.0 158 43.0
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 3.5e-19 99.0 159 41.5
Lalb_Chr10g0094911 Lupinus albus HOM05D006499 ORTHO05D007874 4.5e-19 98.6 145 42.8
Nitab4.5_0000069g0350 Nicotiana tabacum HOM05D006499 ORTHO05D007874 4.5e-19 98.6 158 43.0
Cpa.g.sc92.93 Carica papaya HOM05D006499 ORTHO05D007874 5.9e-19 98.2 160 41.2
THA.LOC104800852 Tarenaya hassleriana HOM05D006499 ORTHO05D007874 5.9e-19 98.2 162 42.6
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 1.0e-18 97.4 147 43.5
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 1.0e-18 97.4 161 42.2
Medtr1g037830 Medicago truncatula HOM05D006499 ORTHO05D007874 1.3e-18 97.1 159 42.8
Thecc.02G158700 Theobroma cacao HOM05D006499 ORTHO05D007874 1.3e-18 97.1 160 41.9
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 1.7e-18 96.7 158 42.4
Ciclev10032745m.g Citrus clementina HOM05D006499 ORTHO05D007874 1.7e-18 96.7 161 41.6
Aa31LG11G2680 Aethionema arabicum HOM05D006499 ORTHO05D007874 2.9e-18 95.9 161 41.6
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 3.8e-18 95.5 161 40.4
ECA236G1709 Erigeron canadensis HOM05D006499 ORTHO05D007874 3.8e-18 95.5 158 41.1
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 3.8e-18 95.5 146 43.2
Actinidia13714 Actinidia chinensis HOM05D006499 ORTHO05D007874 5.0e-18 95.1 159 41.5
arahy.Tifrunner.gnm1.ann1.BULB93 Arachis hypogaea HOM05D006499 ORTHO05D007874 5.0e-18 95.1 160 41.2
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 5.0e-18 95.1 159 43.4
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 5.0e-18 95.1 159 43.4
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 8.5e-18 94.4 159 41.5
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 1.9e-17 93.2 158 38.6
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 2.5e-17 92.8 159 40.3
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 5.5e-17 91.7 145 41.4
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 5.5e-17 91.7 144 41.0
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 5.5e-17 91.7 158 41.8
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 7.2e-17 91.3 159 39.6
Duzib132G0016 Durio zibethinus HOM05D006499 ORTHO05D007874 7.2e-17 91.3 147 41.5
TPR.G29797 Trifolium pratense HOM05D006499 ORTHO05D007874 7.2e-17 91.3 165 40.0
Pp3c12_9010 Physcomitrium patens HOM05D006499 ORTHO05D007874 2.7e-16 89.4 142 39.4
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 3.6e-16 89.0 160 40.6
Thhalv10005281m.g Eutrema salsugineum HOM05D006499 ORTHO05D007874 3.6e-16 89.0 162 40.7
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 4.7e-16 88.6 162 40.1
Sp2g23920 Schrenkiella parvula HOM05D006499 ORTHO05D007874 4.7e-16 88.6 162 40.1
Gohir.D02G188400 Gossypium hirsutum HOM05D006499 ORTHO05D007874 8.0e-16 87.8 146 37.7
Gorai.005G211100 Gossypium raimondii HOM05D006499 ORTHO05D007874 8.0e-16 87.8 146 37.7
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 1.0e-15 87.4 162 40.1
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 1.0e-15 87.4 162 40.1
Gohir.A03G165200 Gossypium hirsutum HOM05D006499 ORTHO05D007874 1.0e-15 87.4 146 37.7
BcaB07g29862 Brassica carinata HOM05D006499 ORTHO05D007874 1.4e-15 87.0 162 40.1
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 1.4e-15 87.0 162 40.1
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 1.4e-15 87.0 162 40.1
AUR62032973 Chenopodium quinoa HOM05D006499 ORTHO05D007874 1.4e-15 87.0 169 37.3
AUR62017708 Chenopodium quinoa HOM05D006499 ORTHO05D007874 1.8e-15 86.7 169 36.7
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 3.9e-15 85.5 159 39.0
EL10Ac9g22960 Beta vulgaris HOM05D006499 ORTHO05D007874 6.7e-15 84.7 168 36.9
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 1.5e-14 83.6 158 37.3
CAN.G2.1 Capsicum annuum HOM05D006499 ORTHO05D007874 7.4e-14 81.3 70 67.1
TAR622G0494 Trochodendron aralioides HOM05D006499 ORTHO05D007874 1.3e-13 80.5 150 39.3
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 4.8e-13 78.6 146 38.4
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 4.8e-13 78.6 146 37.7
Sc06g0006830 Simmondsia chinensis HOM05D006499 ORTHO05D007874 6.3e-13 78.2 127 40.2
Mapoly0180s0008 Marchantia polymorpha HOM05D006499 ORTHO05D007874 1.8e-12 76.6 154 34.4
CSS0024171 Camellia sinensis var. sinensis HOM05D006499 ORTHO05D007874 2.4e-12 76.3 68 63.2
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 3.1e-12 75.9 66 60.6
Zm00001eb076800 Zea mays HOM05D006499 ORTHO05D007874 5.3e-12 75.1 144 34.0
SEGI_40434 Sequoiadendron giganteum HOM05D006499 ORTHO05D007874 1.6e-11 73.6 57 66.7
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 3.5e-11 72.4 66 57.6
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 1.0e-10 70.9 47 76.6
arahy.Tifrunner.gnm1.ann1.YHJY2A Arachis hypogaea HOM05D006499 ORTHO05D007874 1.3e-10 70.5 54 70.4
QL04p029592 Quercus lobata HOM05D006499 ORTHO05D007874 2.2e-10 69.7 61 65.6
QL05p044270 Quercus lobata HOM05D000125 ORTHO05D007874 2.2e-10 69.7 61 65.6
CBR_g16977 Chara braunii HOM05D006499 ORTHO05D007874 6.5e-10 68.2 53 62.3
Nn5g28518 Nelumbo nucifera HOM05D006499 ORTHO05D007874 1.9e-09 66.6 48 68.8


User provided reference genes

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