Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1909 Punica granatum HOM05D005585 ORTHO05D006905 2.6e-203 711.8 357 100.0
Dinv20235 Davidia involucrata HOM05D005585 ORTHO05D006905 1.6e-128 463.4 359 65.7
Manes.06G004600 Manihot esculenta HOM05D005585 ORTHO05D006905 1.6e-125 453.4 364 64.6
Prupe.5G234900 Prunus persica HOM05D005585 ORTHO05D006905 3.8e-122 442.2 360 62.8
QL10p030702 Quercus lobata HOM05D005585 ORTHO05D006905 3.8e-122 442.2 353 62.9
Hma1.2p1_0163F.1_g072970 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 5.0e-122 441.8 355 63.7
Eucgr.B00886 Eucalyptus grandis HOM05D005585 ORTHO05D006905 8.5e-122 441.0 367 64.9
Thecc.03G059000 Theobroma cacao HOM05D005585 ORTHO05D006905 8.5e-122 441.0 356 64.6
Potri.012G045200 Populus trichocarpa HOM05D005585 ORTHO05D006905 4.2e-121 438.7 359 63.0
TAR628G0421 Trochodendron aralioides HOM05D005585 ORTHO05D006905 4.2e-121 438.7 330 66.4
CSS0043300 Camellia sinensis var. sinensis HOM05D005585 ORTHO05D006905 3.6e-120 435.6 363 61.7
GSVIVG01008457001 Vitis vinifera HOM05D005585 ORTHO05D006905 7.9e-120 434.5 294 70.7
CiPaw.15G144600 Carya illinoinensis HOM05D005585 ORTHO05D006905 1.0e-119 434.1 363 64.7
Duzib068G1453 Durio zibethinus HOM05D005585 ORTHO05D006905 1.4e-119 433.7 352 63.9
Lj2g0015776 Lotus japonicus HOM05D005585 ORTHO05D006905 7.4e-118 427.9 316 65.5
Cc04_g06090 Coffea canephora HOM05D005585 ORTHO05D006905 9.7e-118 427.6 359 64.3
MD06G1228400 Malus domestica HOM05D005585 ORTHO05D006905 9.7e-118 427.6 360 62.2
Glyma.07G103200 Glycine max HOM05D005585 ORTHO05D006905 2.2e-117 426.4 315 65.4
RcHm_v2.0_Chr7g0178161 Rosa chinensis HOM05D005585 ORTHO05D006905 2.2e-117 426.4 322 65.8
Phvul.004G149700 Phaseolus vulgaris HOM05D005585 ORTHO05D006905 3.7e-117 425.6 314 66.2
COL.COLO4_28892 Corchorus olitorius HOM05D005585 ORTHO05D006905 4.8e-117 425.2 287 71.8
Gohir.A09G175000 Gossypium hirsutum HOM05D005585 ORTHO05D006905 1.1e-116 424.1 361 61.8
Lalb_Chr22g0353511 Lupinus albus HOM05D005585 ORTHO05D006905 1.8e-116 423.3 317 66.9
Lalb_Chr14g0370621 Lupinus albus HOM05D005585 ORTHO05D006905 2.4e-116 422.9 318 65.7
PGSC0003DMG400005757 Solanum tuberosum HOM05D005585 ORTHO05D006905 4.1e-116 422.2 354 61.3
TWI60G0738 Tripterygium wilfordii HOM05D005585 ORTHO05D006905 4.1e-116 422.2 357 61.9
Hund22311 Selenicereus undatus HOM05D005585 ORTHO05D006905 6.9e-116 421.4 356 61.8
FvH4_5g17500 Fragaria vesca HOM05D005585 ORTHO05D006905 1.5e-115 420.2 358 60.3
Ciclev10015784m.g Citrus clementina HOM05D005585 ORTHO05D006905 2.0e-115 419.9 301 69.4
FAN08G0665 Fragaria x ananassa HOM05D005585 ORTHO05D006905 5.9e-115 418.3 306 65.4
CANSAT80G2587 Cannabis sativa HOM05D005585 ORTHO05D006905 1.7e-114 416.8 344 61.9
Haze_18886 Corylus avellana HOM05D005585 ORTHO05D006905 1.7e-114 416.8 342 62.0
MSTRG.6190 Avicennia marina HOM05D005585 ORTHO05D006905 2.2e-114 416.4 354 62.7
Gorai.006G191400 Gossypium raimondii HOM05D005585 ORTHO05D006905 2.9e-114 416.0 361 60.9
Nn5g30598 Nelumbo nucifera HOM05D005585 ORTHO05D006905 2.9e-114 416.0 347 63.4
Psat1g030240 Pisum sativum HOM05D005585 ORTHO05D006905 2.9e-114 416.0 308 66.9
TPR.G8624 Trifolium pratense HOM05D005585 ORTHO05D006905 3.8e-114 415.6 314 65.0
CANSAT80G1087 Cannabis sativa HOM05D005585 ORTHO05D006905 5.0e-114 415.2 344 62.2
Medtr6g069850 Medicago truncatula HOM05D005585 ORTHO05D006905 8.5e-114 414.5 333 62.8
Nitab4.5_0001264g0050 Nicotiana tabacum HOM05D005585 ORTHO05D006905 1.4e-113 413.7 354 59.9
arahy.Tifrunner.gnm1.ann1.8TLB5V Arachis hypogaea HOM05D005585 ORTHO05D006905 4.2e-113 412.1 285 68.8
Rhsim08G0150200 Rhododendron simsii HOM05D005585 ORTHO05D006905 4.2e-113 412.1 330 63.0
HanXRQChr06g0178071 Helianthus annuus HOM05D005585 ORTHO05D006905 5.5e-113 411.8 338 63.9
Thhalv10021015m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 7.2e-113 411.4 318 61.6
MD14G1237600 Malus domestica HOM05D005585 ORTHO05D006905 7.2e-113 411.4 295 66.1
Ca_25346_v3 Cicer arietinum L. HOM05D005585 ORTHO05D006905 2.7e-112 409.5 314 64.6
Migut.I00267 Erythranthe guttata HOM05D005585 ORTHO05D006905 1.0e-111 407.5 320 63.1
ECA236G2254 Erigeron canadensis HOM05D005585 ORTHO05D006905 1.8e-111 406.8 330 61.5
ClCG04G010560 Citrullus lanatus HOM05D005585 ORTHO05D006905 2.3e-111 406.4 318 64.8
Sed0009200 Sechium edule HOM05D005585 ORTHO05D006905 1.1e-110 404.1 287 68.6
CsaV3_1G007220 Cucumis sativus L. HOM05D005585 ORTHO05D006905 4.4e-110 402.1 327 63.0
Lsat_1_v5_gn_8_83620 Lactuca sativa HOM05D005585 ORTHO05D006905 7.4e-110 401.4 292 66.4
MELO3C002139.2 Cucumis melo HOM05D005585 ORTHO05D006905 1.3e-109 400.6 327 62.7
DCAR_003540 Daucus carota HOM05D005585 ORTHO05D006905 1.3e-109 400.6 306 63.4
BcaB06g25853 Brassica carinata HOM05D005585 ORTHO05D006905 3.7e-109 399.1 354 55.9
AUR62001019 Chenopodium quinoa HOM05D005585 ORTHO05D006905 3.7e-109 399.1 285 68.1
BcaC05g28739 Brassica carinata HOM05D005585 ORTHO05D006905 4.8e-109 398.7 318 61.3
BolC5t33576H Brassica oleracea HOM05D005585 ORTHO05D006905 4.8e-109 398.7 318 61.3
THA.LOC104821828 Tarenaya hassleriana HOM05D005585 ORTHO05D006905 4.8e-109 398.7 337 60.8
A05p31890 Brassica napus HOM05D005585 ORTHO05D006905 1.1e-108 397.5 321 61.7
C05p48400 Brassica napus HOM05D005585 ORTHO05D006905 1.1e-108 397.5 322 61.5
BraA05t22021Z Brassica rapa HOM05D005585 ORTHO05D006905 1.1e-108 397.5 321 61.7
Aqoxy5G00867 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 1.8e-108 396.7 286 65.7
Aa31LG8G4780 Aethionema arabicum HOM05D005585 ORTHO05D006905 9.1e-108 394.4 319 60.8
Oeu026263.1 Olea europaea HOM05D005585 ORTHO05D006905 9.1e-108 394.4 301 64.5
Solyc03g118610.4 Solanum lycopersicum HOM05D005585 ORTHO05D006905 3.5e-107 392.5 360 59.7
ATR1153G069 Amborella trichopoda HOM05D005585 ORTHO05D006905 1.3e-106 390.6 326 59.5
Sp3g16030 Schrenkiella parvula HOM05D005585 ORTHO05D006905 1.3e-106 390.6 319 59.9
Sopen03g037560 Solanum pennellii HOM05D005585 ORTHO05D006905 2.2e-106 389.8 357 59.9
SalBow7G1179 Salvia bowleyana HOM05D005585 ORTHO05D006905 6.5e-106 388.3 321 61.1
vmacro08951 Vaccinium macrocarpon HOM05D005585 ORTHO05D006905 3.2e-105 386.0 376 54.5
AL3G31080 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 5.5e-105 385.2 353 58.1
EL10Ac4g09125 Beta vulgaris HOM05D005585 ORTHO05D006905 5.5e-105 385.2 334 60.2
BraA01t03712Z Brassica rapa HOM05D005585 ORTHO05D006905 9.4e-105 384.4 315 59.7
A01p36480 Brassica napus HOM05D005585 ORTHO05D006905 1.2e-104 384.0 318 59.1
AT3G17910 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 1.6e-104 383.6 294 62.2
arahy.Tifrunner.gnm1.ann1.E1YKD2 Arachis hypogaea HOM05D005585 ORTHO05D006905 8.0e-104 381.3 262 67.6
PSO170G1171 Papaver somniferum HOM05D005585 ORTHO05D006905 1.4e-103 380.6 336 60.4
BcaC09g48755 Brassica carinata HOM05D005585 ORTHO05D006905 4.0e-103 379.0 319 59.2
C01p46240 Brassica napus HOM05D005585 ORTHO05D006905 5.2e-103 378.6 319 59.2
BolC1t04585H Brassica oleracea HOM05D005585 ORTHO05D006905 5.2e-103 378.6 319 59.2
CARHR093240 Cardamine hirsuta HOM05D005585 ORTHO05D006905 6.7e-103 378.3 362 56.9
PSO017G0826 Papaver somniferum HOM05D005585 ORTHO05D006905 1.5e-102 377.1 325 61.2
Carub.0003s1764 Capsella rubella HOM05D005585 ORTHO05D006905 2.6e-102 376.3 285 61.8
FAN04G2668 Fragaria x ananassa HOM05D005585 ORTHO05D006905 1.3e-101 374.0 334 56.9
FAN18G2151 Fragaria x ananassa HOM05D005585 ORTHO05D006905 1.3e-101 374.0 282 62.8
Sabra12G0031400 Salix brachista HOM05D005585 ORTHO05D006905 1.7e-101 373.6 289 63.7
Nitab4.5_0010397g0010 Nicotiana tabacum HOM05D005585 ORTHO05D006905 3.1e-100 369.4 347 56.5
BcaB04g20808 Brassica carinata HOM05D005585 ORTHO05D006905 1.6e-99 367.1 366 54.6
Sc12g0007980 Simmondsia chinensis HOM05D005585 ORTHO05D006905 2.0e-99 366.7 264 65.5
Peaxi162Scf00314g00335 Petunia axillaris HOM05D005585 ORTHO05D006905 1.7e-98 363.6 259 69.5
CDE04G0750 Ceratophyllum demersum HOM05D001130 ORTHO05D006905 2.1e-96 356.7 325 58.5
Lj5C159G17 Lonicera japonica HOM05D005585 ORTHO05D006905 2.7e-96 356.3 247 70.4
Glyma.09G174400 Glycine max HOM05D005585 ORTHO05D006905 3.6e-96 355.9 257 66.5
Os03g0200700 Oryza sativa ssp. japonica HOM05D005585 ORTHO05D006905 1.8e-95 353.6 289 59.9
Aqoxy5G00865 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 4.0e-95 352.4 261 65.1
VMungo0464G1491 Vigna mungo HOM05D005585 ORTHO05D006905 6.8e-95 351.7 247 68.8
TAR628G1367 Trochodendron aralioides HOM05D005585 ORTHO05D006905 2.0e-94 350.1 258 68.2
HPP92_019169 Vanilla planifolia HOM05D005585 ORTHO05D006905 9.8e-94 347.8 354 53.1
Ah.06g192310 Amaranthus hybridus HOM05D005585 ORTHO05D008527 3.5e-91 339.3 240 66.7
unitig_27.g25108 Utricularia gibba HOM05D005585 ORTHO05D006905 2.2e-90 336.7 320 55.0
CAN.G843.48 Capsicum annuum HOM05D005585 ORTHO05D006905 6.5e-90 335.1 294 59.9
Hma1.2p1_0163F.1_g072980 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 1.0e-87 327.8 228 66.7
Zm00001eb007820 Zea mays HOM05D005585 ORTHO05D006905 1.8e-84 317.0 257 59.9
QL12p007232 Quercus lobata HOM05D005585 ORTHO05D006905 5.9e-83 312.0 403 44.7
Cpa.g.c34889 Carica papaya HOM05D005585 ORTHO05D006905 2.9e-82 309.7 223 67.3
AUR62004935 Chenopodium quinoa HOM05D005585 ORTHO05D006905 4.3e-81 305.8 225 66.7
Eucgr.B00986 Eucalyptus grandis HOM05D005585 ORTHO05D006905 8.9e-79 298.1 201 74.1
Mapoly0094s0071 Marchantia polymorpha HOM05D005585 ORTHO05D006905 1.2e-67 261.2 300 46.7
Gohir.D09G170128 Gossypium hirsutum HOM05D005585 ORTHO05D006905 1.6e-64 250.8 181 70.2
SMO147G0391 Selaginella moellendorffii HOM05D005585 ORTHO05D006905 4.7e-64 249.2 287 44.3
Pp3c5_4480 Physcomitrium patens HOM05D005585 ORTHO05D006905 1.2e-62 244.6 362 39.2
Cpa.g.sc3.377 Carica papaya HOM05D005585 ORTHO05D006905 3.2e-60 236.5 304 45.7
CARHR038140 Cardamine hirsuta HOM05D005585 ORTHO05D006905 1.3e-58 231.1 337 40.1
SGA_v2.0_scaffold58G20371 Striga asiatica HOM05D005585 ORTHO05D006905 3.8e-53 213.0 213 53.1
AL1G55160 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 1.1e-52 211.5 271 41.3
Thhalv10011732m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 2.7e-51 206.8 247 43.3
CBR_g50834 Chara braunii HOM05D002601 ORTHO05D002884 1.9e-49 200.7 388 35.1
AagrBONN_evm.TU.Sc2ySwM_340.176 Anthoceros agrestis HOM05D005585 ORTHO05D006905 4.7e-48 196.1 258 42.6
AT1G48510 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 6.2e-48 195.7 271 39.9
SEGI_34948 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 1.2e-46 191.4 156 59.6
Carub.0001s3764 Capsella rubella HOM05D005585 ORTHO05D006905 2.9e-45 186.8 267 38.2
BcaB04g20806 Brassica carinata HOM05D005585 ORTHO05D006905 1.6e-43 181.0 183 51.4
TAR628G1286 Trochodendron aralioides HOM05D005585 ORTHO05D006905 2.7e-43 180.3 134 65.7
Carub.0001s3763 Capsella rubella HOM05D005585 ORTHO05D006905 5.1e-42 176.0 257 38.1
FAN13G1174 Fragaria x ananassa HOM05D005585 ORTHO05D006905 2.2e-37 160.6 133 60.9
Zm00001eb338430 Zea mays HOM05D005585 ORTHO05D006905 6.4e-37 159.1 92 75.0
Gohir.D09G170071 Gossypium hirsutum HOM05D005585 ORTHO05D006905 2.4e-36 157.1 161 53.4
BcaB08g34867 Brassica carinata HOM05D005585 ORTHO05D006905 4.2e-36 156.4 242 37.2
PRCOL_00002102 Prasinoderma coloniale HOM05D005585 ORTHO05D006905 6.7e-34 149.1 301 31.6
Zm00001eb099110 Zea mays HOM05D005585 ORTHO05D006905 1.1e-31 141.7 123 53.7
SEGI_19570 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 2.0e-30 137.5 107 59.8
Cre16.g664700 Chlamydomonas reinhardtii HOM05D005585 ORTHO05D006905 1.7e-21 107.8 309 27.2
CBR_g629 Chara braunii HOM05D005585 ORTHO05D006905 2.9e-21 107.1 220 34.5
CDE07G0810 Ceratophyllum demersum HOM05D005585 ORTHO05D006905 1.3e-08 65.1 79 46.8


User provided reference genes

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