Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1862 Punica granatum HOM05D005289 ORTHO05D006346 3.0e-91 338.6 178 100.0
MBI03_g11910_MAGBIO Magnolia biondii HOM05D005289 ORTHO05D006346 8.8e-27 124.4 122 54.9
CiPaw.16G000100 Carya illinoinensis HOM05D005289 ORTHO05D006346 1.7e-25 120.2 178 44.9
Manes.16G000200 Manihot esculenta HOM05D005289 ORTHO05D006346 1.7e-25 120.2 117 55.6
Dinv09331 Davidia involucrata HOM05D005289 ORTHO05D006346 2.8e-25 119.4 125 52.8
Eucgr.G02623 Eucalyptus grandis HOM05D005289 ORTHO05D006346 2.8e-25 119.4 171 48.5
THA.LOC104800596 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 2.8e-25 119.4 120 51.7
Ciclev10017019m.g Citrus clementina HOM05D005289 ORTHO05D006346 4.8e-25 118.6 172 43.6
Gohir.D02G191500 Gossypium hirsutum HOM05D005289 ORTHO05D006346 4.8e-25 118.6 121 56.2
Gorai.005G214300 Gossypium raimondii HOM05D005289 ORTHO05D006346 4.8e-25 118.6 121 56.2
Manes.16G039900 Manihot esculenta HOM05D005289 ORTHO05D006346 2.4e-24 116.3 121 55.4
Duzib248G0326 Durio zibethinus HOM05D005289 ORTHO05D006346 3.1e-24 115.9 84 65.5
Gohir.A03G168400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 3.1e-24 115.9 121 55.4
TAR376G0259 Trochodendron aralioides HOM05D005289 ORTHO05D006346 5.3e-24 115.2 127 48.0
PGR142G2143 Punica granatum HOM05D005289 ORTHO05D006346 9.1e-24 114.4 120 52.5
Oeu049492.1 Olea europaea HOM05D005289 ORTHO05D006346 1.2e-23 114.0 83 63.9
Prupe.1G352600 Prunus persica HOM05D005289 ORTHO05D006346 1.2e-23 114.0 137 47.4
BcaB01g05597 Brassica carinata HOM05D005289 ORTHO05D006346 1.5e-23 113.6 151 45.0
C03p04320 Brassica napus HOM05D005289 ORTHO05D006346 1.5e-23 113.6 124 50.0
BolC3t12965H Brassica oleracea HOM05D005289 ORTHO05D006346 1.5e-23 113.6 124 50.0
DCAR_006352 Daucus carota HOM05D005289 ORTHO05D006346 1.5e-23 113.6 172 40.7
Dinv43423 Davidia involucrata HOM05D005289 ORTHO05D006346 1.5e-23 113.6 80 68.8
C02p60860 Brassica napus HOM05D005289 ORTHO05D006346 2.0e-23 113.2 165 44.2
Cpa.g.sc248.7 Carica papaya HOM05D005289 ORTHO05D006346 2.6e-23 112.8 152 46.7
Cfa018663 Carpinus fangiana HOM05D005289 ORTHO05D006346 2.6e-23 112.8 87 65.5
A02p40970 Brassica napus HOM05D005289 ORTHO05D006346 3.4e-23 112.5 165 44.2
FvH4_4g37381 Fragaria vesca HOM05D005289 ORTHO05D006346 3.4e-23 112.5 117 52.1
FAN17G1203 Fragaria x ananassa HOM05D005289 ORTHO05D006346 3.4e-23 112.5 117 52.1
Lj9P634T19 Lonicera japonica HOM05D005289 ORTHO05D006346 3.4e-23 112.5 80 66.2
PSO782G1364 Papaver somniferum HOM05D005289 ORTHO05D006346 3.4e-23 112.5 120 51.7
SalBow6G0941 Salvia bowleyana HOM05D005289 ORTHO05D006346 3.4e-23 112.5 83 61.4
Rhsim07G0056900 Rhododendron simsii HOM05D005289 ORTHO05D006346 4.5e-23 112.1 80 67.5
arahy.Tifrunner.gnm1.ann1.CPCZ9R Arachis hypogaea HOM05D005289 ORTHO05D006346 5.9e-23 111.7 182 44.5
Manes.16G040000 Manihot esculenta HOM05D005289 ORTHO05D006346 5.9e-23 111.7 123 54.5
PSO063G1455 Papaver somniferum HOM05D005289 ORTHO05D006346 5.9e-23 111.7 120 54.2
RhsimUnG0144200 Rhododendron simsii HOM05D005289 ORTHO05D006346 5.9e-23 111.7 80 66.2
Duzib132G0443 Durio zibethinus HOM05D005289 ORTHO05D006346 7.7e-23 111.3 155 41.9
Oeu049005.1 Olea europaea HOM05D005289 ORTHO05D006346 1.0e-22 110.9 83 61.4
BolC2t12138H Brassica oleracea HOM05D005289 ORTHO05D006346 1.3e-22 110.5 165 43.6
BraA02t09045Z Brassica rapa HOM05D005289 ORTHO05D006346 1.3e-22 110.5 165 44.2
QL01p000104 Quercus lobata HOM05D005289 ORTHO05D006346 1.3e-22 110.5 127 49.6
vmacro13683 Vaccinium macrocarpon HOM05D005289 ORTHO05D006346 1.3e-22 110.5 80 66.2
CANSAT78G0451 Cannabis sativa HOM05D005289 ORTHO05D006346 1.7e-22 110.2 83 61.4
Ca_04131_v3 Cicer arietinum L. HOM05D005289 ORTHO05D006346 1.7e-22 110.2 116 50.9
FAN07G0133 Fragaria x ananassa HOM05D005289 ORTHO05D006346 1.7e-22 110.2 117 51.3
FAN07G0378 Fragaria x ananassa HOM05D005289 ORTHO05D006346 1.7e-22 110.2 117 51.3
MD16G1005600 Malus domestica HOM05D005289 ORTHO05D006346 1.7e-22 110.2 117 52.1
AT5G08410 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 2.2e-22 109.8 126 49.2
A03p03840 Brassica napus HOM05D002331 ORTHO05D002624 2.2e-22 109.8 183 39.3
RcHm_v2.0_Chr4g0447301 Rosa chinensis HOM05D005289 ORTHO05D006346 2.2e-22 109.8 117 50.4
AL6G18870 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 2.9e-22 109.4 125 49.6
Hund08591 Selenicereus undatus HOM05D005289 ORTHO05D006346 2.9e-22 109.4 147 46.9
CARHR204630 Cardamine hirsuta HOM05D005289 ORTHO05D006346 3.8e-22 109.0 126 49.2
BcaB01g05599 Brassica carinata HOM05D005289 ORTHO05D006346 5.0e-22 108.6 151 47.0
Nn7g38127 Nelumbo nucifera HOM05D005289 ORTHO05D006346 5.0e-22 108.6 189 42.3
BraA03t09731Z Brassica rapa HOM05D002331 ORTHO05D002624 6.5e-22 108.2 186 39.8
Carub.0006s0732 Capsella rubella HOM05D005289 ORTHO05D006346 6.5e-22 108.2 126 48.4
CAN.G219.47 Capsicum annuum HOM05D005289 ORTHO05D006346 6.5e-22 108.2 80 62.5
Hma1.2p1_2160F.1_g315560 Hydrangea macrophylla HOM05D005289 ORTHO05D006346 8.5e-22 107.8 177 40.1
Aa31LG3G18150 Aethionema arabicum HOM05D005289 ORTHO05D006346 1.1e-21 107.5 82 61.0
Eucgr.J00323 Eucalyptus grandis HOM05D005289 ORTHO05D006346 1.1e-21 107.5 121 51.2
Manes.14G174500 Manihot esculenta HOM05D005289 ORTHO05D006346 2.5e-21 106.3 80 63.8
Nitab4.5_0000707g0260 Nicotiana tabacum HOM05D005289 ORTHO05D006346 2.5e-21 106.3 80 61.2
Sc06g0007700 Simmondsia chinensis HOM05D005289 ORTHO05D006346 2.5e-21 106.3 126 48.4
VMungo0464G1452 Vigna mungo HOM05D005289 ORTHO05D006346 2.5e-21 106.3 172 41.9
Thhalv10005472m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 3.2e-21 105.9 185 41.1
TWI77G0922 Tripterygium wilfordii HOM05D005289 ORTHO05D006346 3.2e-21 105.9 162 45.1
PGSC0003DMG400006858 Solanum tuberosum HOM05D005289 ORTHO05D006346 4.2e-21 105.5 178 42.1
Migut.N01609 Erythranthe guttata HOM05D005289 ORTHO05D006346 7.2e-21 104.8 83 54.2
Sp2g23720 Schrenkiella parvula HOM05D005289 ORTHO05D006346 7.2e-21 104.8 142 44.4
THA.LOC104819368 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 7.2e-21 104.8 75 68.0
Sopen01g034490 Solanum pennellii HOM05D005289 ORTHO05D006346 9.4e-21 104.4 178 42.1
SGA_v2.0_scaffold24G10667 Striga asiatica HOM05D005289 ORTHO05D006346 9.4e-21 104.4 83 53.0
MSTRG.5030 Avicennia marina HOM05D005289 ORTHO05D006346 1.2e-20 104.0 83 55.4
Solyc01g087520.3 Solanum lycopersicum HOM05D005289 ORTHO05D006346 1.2e-20 104.0 179 41.3
CSS0022575 Camellia sinensis var. sinensis HOM05D005289 ORTHO05D006346 1.6e-20 103.6 161 40.4
CARHR190070 Cardamine hirsuta HOM05D005289 ORTHO05D006346 1.6e-20 103.6 141 46.8
Glyma.19G000200 Glycine max HOM05D005289 ORTHO05D006346 1.6e-20 103.6 118 48.3
AL6G34730 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 2.1e-20 103.2 182 39.0
Cc02_g28180 Coffea canephora HOM05D005289 ORTHO05D006346 2.1e-20 103.2 183 38.8
Lsat_1_v5_gn_4_31381 Lactuca sativa HOM05D005289 ORTHO05D006346 2.1e-20 103.2 82 57.3
MD13G1000200 Malus domestica HOM05D005289 ORTHO05D006346 2.1e-20 103.2 179 41.3
Thhalv10014787m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 2.7e-20 102.8 187 40.6
HanXRQChr17g0563021 Helianthus annuus HOM05D005289 ORTHO05D006346 2.7e-20 102.8 82 58.5
Oeu006561.1 Olea europaea HOM05D005289 ORTHO05D006346 2.7e-20 102.8 79 58.2
Thecc.02G151000 Theobroma cacao HOM05D005289 ORTHO05D006346 3.6e-20 102.4 87 56.3
Nitab4.5_0006228g0010 Nicotiana tabacum HOM05D005289 ORTHO05D006346 4.7e-20 102.1 80 60.0
Lj2g0002318 Lotus japonicus HOM05D005289 ORTHO05D006346 6.1e-20 101.7 176 40.3
Atru.chr11.6 Acer truncatum HOM05D005289 ORTHO05D006346 7.9e-20 101.3 121 47.1
Sp6g34530 Schrenkiella parvula HOM05D005289 ORTHO05D006346 7.9e-20 101.3 114 49.1
Sed0008094 Sechium edule HOM05D005289 ORTHO05D006346 7.9e-20 101.3 81 61.7
Glyma.05G000300 Glycine max HOM05D005289 ORTHO05D006346 1.0e-19 100.9 132 46.2
ATR0124G002 Amborella trichopoda HOM05D005289 ORTHO05D006346 1.4e-19 100.5 85 54.1
AT5G23440 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 2.3e-19 99.8 183 37.7
CsaV3_5G029240 Cucumis sativus L. HOM05D005289 ORTHO05D006346 3.0e-19 99.4 83 60.2
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 3.0e-19 99.4 82 57.3
Phvul.004G000400 Phaseolus vulgaris HOM05D005289 ORTHO05D006346 3.0e-19 99.4 171 39.2
CDE05G2330 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 3.9e-19 99.0 167 38.3
MELO3C011776.2 Cucumis melo HOM05D004444 ORTHO05D005246 3.9e-19 99.0 83 59.0
Aqoxy3G04359 Aquilegia oxysepala HOM05D005289 ORTHO05D006346 5.1e-19 98.6 144 41.0
CDE11G0284 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 5.1e-19 98.6 172 38.4
ClCG11G012840 Citrullus lanatus HOM05D005289 ORTHO05D006346 6.7e-19 98.2 83 59.0
Carub.0006s2124 Capsella rubella HOM05D005289 ORTHO05D006346 8.8e-19 97.8 180 37.8
Gohir.A12G011400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 1.5e-18 97.1 71 63.4
Gohir.D12G011800 Gossypium hirsutum HOM05D005289 ORTHO05D006346 2.0e-18 96.7 69 65.2
Gorai.008G011800 Gossypium raimondii HOM05D005289 ORTHO05D006346 2.0e-18 96.7 69 65.2
Medtr6g004100 Medicago truncatula HOM05D005289 ORTHO05D006346 2.0e-18 96.7 83 59.0
unitig_699.g19828 Utricularia gibba HOM05D005289 ORTHO05D006346 2.0e-18 96.7 78 57.7
Sed0001576 Sechium edule HOM05D005289 ORTHO05D006346 2.6e-18 96.3 178 41.6
Actinidia31077 Actinidia chinensis HOM05D005289 ORTHO05D006346 3.3e-18 95.9 78 61.5
ECA234G0076 Erigeron canadensis HOM05D005289 ORTHO05D006346 4.4e-18 95.5 80 57.5
Potri.010G255500 Populus trichocarpa HOM05D005289 ORTHO05D006346 7.4e-18 94.7 81 58.0
TPR.G25213 Trifolium pratense HOM05D005289 ORTHO05D006346 7.4e-18 94.7 86 54.7
HPP92_004266 Vanilla planifolia HOM05D005289 ORTHO05D006346 7.4e-18 94.7 177 37.9
AUR62028426 Chenopodium quinoa HOM05D005289 ORTHO05D006346 1.3e-17 94.0 82 57.3
Os02g0638300 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 2.8e-17 92.8 80 52.5
Ah.15g093460 Amaranthus hybridus HOM05D005289 ORTHO05D006346 3.7e-17 92.4 177 42.4
Sabra08G0000100 Salix brachista HOM05D005289 ORTHO05D006346 6.3e-17 91.7 81 56.8
Sabra10G0198900 Salix brachista HOM05D005289 ORTHO05D006346 6.3e-17 91.7 121 46.3
Os04g0528800 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 1.1e-16 90.9 155 38.1
Potri.008G002200 Populus trichocarpa HOM05D005289 ORTHO05D006346 1.1e-16 90.9 81 56.8
CDE01G0630 Ceratophyllum demersum HOM05D000556 ORTHO05D006346 2.4e-16 89.7 125 41.6
SEGI_30396 Sequoiadendron giganteum HOM05D005289 ORTHO05D006346 4.1e-16 89.0 164 37.2
Zm00001eb185670 Zea mays HOM05D005289 ORTHO05D006346 4.1e-16 89.0 80 51.2
AUR62038497 Chenopodium quinoa HOM05D005289 ORTHO05D006346 9.1e-16 87.8 131 42.7
MD10G1109200 Malus domestica HOM05D005289 ORTHO05D006346 1.2e-15 87.4 75 58.7
Peaxi162Scf00019g00006 Petunia axillaris HOM05D005289 ORTHO05D006346 2.0e-15 86.7 69 60.9
Zm00001eb248360 Zea mays HOM05D005289 ORTHO05D006346 2.0e-15 86.7 122 41.0
Zm00001eb075910 Zea mays HOM05D005289 ORTHO05D006346 3.4e-15 85.9 173 35.8
MSTRG.28061 Avicennia marina HOM05D005289 ORTHO05D006346 1.0e-14 84.3 73 54.8
AagrBONN_evm.TU.Sc2ySwM_344.750 Anthoceros agrestis HOM05D005289 ORTHO05D006346 1.3e-14 84.0 80 51.2
AagrBONN_evm.TU.Sc2ySwM_368.462 Anthoceros agrestis HOM05D000595 ORTHO05D006346 1.1e-13 80.9 90 45.6
Pp3c4_31020 Physcomitrium patens HOM05D005289 ORTHO05D006346 4.2e-13 79.0 90 45.6
Pp3c26_13800 Physcomitrium patens HOM05D005289 ORTHO05D006346 2.1e-12 76.6 92 43.5
Pp3c26_13840 Physcomitrium patens HOM05D005289 ORTHO05D006346 2.1e-12 76.6 92 43.5
Pp3c4_29510 Physcomitrium patens HOM05D005289 ORTHO05D006346 3.6e-12 75.9 89 42.7
SMO367G0363 Selaginella moellendorffii HOM05D005289 ORTHO05D006346 1.0e-11 74.3 80 45.0
EL10Ac1g01282 Beta vulgaris HOM05D005289 ORTHO05D006346 1.4e-11 73.9 95 43.2
Mapoly0005s0050 Marchantia polymorpha HOM05D005289 ORTHO05D006346 1.4e-11 73.9 139 35.3
A06p34430 Brassica napus HOM05D005289 ORTHO05D006346 2.3e-11 73.2 81 51.9
BraA06t26372Z Brassica rapa HOM05D005289 ORTHO05D006346 2.3e-11 73.2 81 51.9
CBR_g32063 Chara braunii HOM05D005289 ORTHO05D006346 6.7e-11 71.6 148 36.5
Cre16.g687294 Chlamydomonas reinhardtii HOM05D005289 ORTHO05D006346 3.5e-07 59.3 82 45.1
Psat1g053320 Pisum sativum HOM05D005289 ORTHO05D006346 7.7e-07 58.2 85 41.2


User provided reference genes

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