Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1826 Punica granatum HOM05D007010 ORTHO05D008591 7.6e-52 207.2 131 100.0
Eucgr.C02362 Eucalyptus grandis HOM05D007010 ORTHO05D008591 4.5e-20 101.7 132 48.5
CANSAT56G1710 Cannabis sativa HOM05D007010 ORTHO05D008591 5.1e-16 88.2 111 49.5
Hma1.2p1_0450F.1_g155640 Hydrangea macrophylla HOM05D007010 ORTHO05D008591 8.7e-16 87.4 133 42.9
Ciclev10009901m.g Citrus clementina HOM05D007010 ORTHO05D008591 1.9e-15 86.3 135 43.7
Sc09g0009690 Simmondsia chinensis HOM05D007010 ORTHO05D008591 1.9e-15 86.3 151 43.7
TPR.G16317 Trifolium pratense HOM05D007010 ORTHO05D008591 4.3e-15 85.1 134 44.8
Nn8g38932 Nelumbo nucifera HOM05D007010 ORTHO05D008591 7.4e-15 84.3 129 43.4
Nn8g38936 Nelumbo nucifera HOM05D007010 ORTHO05D008591 7.4e-15 84.3 129 43.4
Thecc.09G051700 Theobroma cacao HOM05D007010 ORTHO05D008591 7.4e-15 84.3 134 46.3
Sed0004842 Sechium edule HOM05D007010 ORTHO05D008591 9.6e-15 84.0 142 41.5
Hund03353 Selenicereus undatus HOM05D007010 ORTHO05D008591 2.8e-14 82.4 131 42.0
Haze_03853 Corylus avellana HOM05D007010 ORTHO05D008591 3.7e-14 82.0 92 48.9
Psat7g115760 Pisum sativum HOM05D007010 ORTHO05D008591 3.7e-14 82.0 133 40.6
Lsat_1_v5_gn_9_89520 Lactuca sativa HOM05D007010 ORTHO05D008591 4.8e-14 81.6 149 39.6
TAR383G0702 Trochodendron aralioides HOM05D007010 ORTHO05D008591 1.1e-13 80.5 132 48.5
QL05p000846 Quercus lobata HOM05D007010 ORTHO05D008591 1.4e-13 80.1 91 48.4
Atru.chr1.3280 Acer truncatum HOM05D007010 ORTHO05D008591 1.8e-13 79.7 140 41.4
FvH4_2g32140 Fragaria vesca HOM05D007010 ORTHO05D008591 1.8e-13 79.7 138 46.4
Lalb_Chr05g0218511 Lupinus albus HOM05D007010 ORTHO05D008591 1.8e-13 79.7 139 41.7
FAN24G3148 Fragaria x ananassa HOM05D007010 ORTHO05D008591 2.4e-13 79.3 138 46.4
Lj4g0022512 Lotus japonicus HOM05D007010 ORTHO05D008591 3.1e-13 79.0 138 47.1
Medtr4g088585 Medicago truncatula HOM05D007010 ORTHO05D008591 3.1e-13 79.0 131 41.2
Atru.chr7.2115 Acer truncatum HOM05D007010 ORTHO05D008591 4.1e-13 78.6 136 49.3
FAN27G2071 Fragaria x ananassa HOM05D007010 ORTHO05D008591 5.3e-13 78.2 132 48.5
Glyma.07G198700 Glycine max HOM05D007010 ORTHO05D008591 6.9e-13 77.8 136 41.2
Potri.018G056000 Populus trichocarpa HOM05D007010 ORTHO05D008591 6.9e-13 77.8 126 39.7
CAN.G208.75 Capsicum annuum HOM05D007010 ORTHO05D008591 9.0e-13 77.4 101 45.5
QL05p001142 Quercus lobata HOM05D007010 ORTHO05D008591 9.0e-13 77.4 91 48.4
CsaV3_4G035530 Cucumis sativus L. HOM05D007010 ORTHO05D008591 1.2e-12 77.0 141 39.0
Sp6g31840 Schrenkiella parvula HOM05D007010 ORTHO05D008591 1.5e-12 76.6 137 36.5
TAR497G0007 Trochodendron aralioides HOM05D007010 ORTHO05D008591 2.0e-12 76.3 132 40.2
TWI63G1421 Tripterygium wilfordii HOM05D007010 ORTHO05D008591 2.6e-12 75.9 133 38.3
Lj5g0011556 Lotus japonicus HOM05D007010 ORTHO05D008591 3.4e-12 75.5 135 43.0
Nn8g38933 Nelumbo nucifera HOM05D007010 ORTHO05D008591 3.4e-12 75.5 125 41.6
Lj7P280T30 Lonicera japonica HOM05D007010 ORTHO05D008591 4.5e-12 75.1 136 42.6
RcHm_v2.0_Chr6g0310541 Rosa chinensis HOM05D007010 ORTHO05D008591 4.5e-12 75.1 35 91.4
MD08G1044600 Malus domestica HOM05D007010 ORTHO05D008591 5.9e-12 74.7 161 36.0
Sp7g31830 Schrenkiella parvula HOM05D007010 ORTHO05D008591 5.9e-12 74.7 131 38.2
MD15G1061800 Malus domestica HOM05D007010 ORTHO05D008591 7.6e-12 74.3 162 35.2
Solyc12g095940.1 Solanum lycopersicum HOM05D007010 ORTHO05D008591 1.3e-11 73.6 136 39.7
Cfa017938 Carpinus fangiana HOM05D007010 ORTHO05D008591 1.7e-11 73.2 33 93.9
Manes.03G046700 Manihot esculenta HOM05D007010 ORTHO05D008591 1.7e-11 73.2 146 44.5
VMungo0251G3434 Vigna mungo HOM05D007010 ORTHO05D008591 1.7e-11 73.2 131 38.2
Aa31LG3G15440 Aethionema arabicum HOM05D007010 ORTHO05D008591 2.2e-11 72.8 135 37.8
Phvul.002G230000 Phaseolus vulgaris HOM05D007010 ORTHO05D008591 2.2e-11 72.8 134 38.1
Sopen12g031840 Solanum pennellii HOM05D007010 ORTHO05D008591 2.9e-11 72.4 136 39.7
Ca_18571_v3 Cicer arietinum L. HOM05D007010 ORTHO05D008591 3.8e-11 72.0 135 39.3
SalBow2G0398 Salvia bowleyana HOM05D007010 ORTHO05D008591 3.8e-11 72.0 133 38.3
SalBow2G1284 Salvia bowleyana HOM05D007010 ORTHO05D008591 3.8e-11 72.0 133 38.3
SalBow7G3522 Salvia bowleyana HOM05D007010 ORTHO05D008591 6.5e-11 71.2 135 37.8
SGA_v2.0_scaffold52G19071 Striga asiatica HOM05D007010 ORTHO05D008591 6.5e-11 71.2 132 37.1
Gohir.D06G088700 Gossypium hirsutum HOM05D007010 ORTHO05D008591 8.4e-11 70.9 136 40.4
Cpa.g.sc7.196 Carica papaya HOM05D007010 ORTHO05D008591 1.9e-10 69.7 143 39.9
PSO478G3947 Papaver somniferum HOM05D007010 ORTHO05D008591 3.2e-10 68.9 106 50.0
FAN10G4050 Fragaria x ananassa HOM05D007010 ORTHO05D008591 5.5e-10 68.2 35 80.0
Gohir.A06G087901 Gossypium hirsutum HOM05D007010 ORTHO05D008591 5.5e-10 68.2 136 39.7
Prupe.1G414500 Prunus persica HOM05D007010 ORTHO05D008591 7.2e-10 67.8 175 33.1
PGSC0003DMG400029388 Solanum tuberosum HOM05D007010 ORTHO05D008591 1.2e-09 67.0 150 36.7
ClCG05G017750 Citrullus lanatus HOM05D007010 ORTHO05D008591 1.6e-09 66.6 94 43.6
Dinv23425 Davidia involucrata HOM05D000575 ORTHO05D004448 1.6e-09 66.6 118 41.5
Oeu037327.1 Olea europaea HOM05D007010 ORTHO05D008591 1.6e-09 66.6 141 35.5
THA.LOC104811249 Tarenaya hassleriana HOM05D007010 ORTHO05D008591 2.1e-09 66.2 141 36.2
Aqoxy3G02885 Aquilegia oxysepala HOM05D007010 ORTHO05D008591 3.5e-09 65.5 35 71.4
Duzib168G1521 Durio zibethinus HOM05D007010 ORTHO05D008591 3.5e-09 65.5 116 39.7
ECA240G3686 Erigeron canadensis HOM05D007010 ORTHO05D008591 4.6e-09 65.1 151 35.8
Zm00001eb054150 Zea mays HOM05D007010 ORTHO05D008591 4.6e-09 65.1 35 74.3
ATR0697G019 Amborella trichopoda HOM05D007010 ORTHO05D008591 7.9e-09 64.3 35 74.3
BcaC01g00931 Brassica carinata HOM05D007010 ORTHO05D008591 7.9e-09 64.3 35 71.4
C03p86090 Brassica napus HOM05D007010 ORTHO05D008591 7.9e-09 64.3 35 71.4
BolC3t20897H Brassica oleracea HOM05D007010 ORTHO05D008591 7.9e-09 64.3 35 71.4
BraA08t33674Z Brassica rapa HOM05D007010 ORTHO05D008591 7.9e-09 64.3 35 71.4
Oeu018653.1 Olea europaea HOM05D007010 ORTHO05D008591 7.9e-09 64.3 131 38.2
Potri.006G232200 Populus trichocarpa HOM05D007010 ORTHO05D008591 7.9e-09 64.3 125 35.2
Thhalv10014970m.g Eutrema salsugineum HOM05D007010 ORTHO05D008591 1.0e-08 63.9 144 38.2
Pp3c2_14930 Physcomitrium patens HOM05D007010 ORTHO05D008591 1.3e-08 63.5 155 34.2
AUR62009172 Chenopodium quinoa HOM05D007010 ORTHO05D008591 2.3e-08 62.8 176 33.5
Glyma.13G177700 Glycine max HOM05D007010 ORTHO05D008591 3.0e-08 62.4 128 39.1
BcaB03g11855 Brassica carinata HOM05D007010 ORTHO05D008591 3.9e-08 62.0 69 43.5
SEGI_19332 Sequoiadendron giganteum HOM05D007010 ORTHO05D008591 6.7e-08 61.2 118 41.5
Migut.L00284 Erythranthe guttata HOM05D007010 ORTHO05D008591 2.5e-07 59.3 145 35.2
Rhsim11G0045900 Rhododendron simsii HOM05D007010 ORTHO05D008591 2.5e-07 59.3 119 37.0
AT5G11760 Arabidopsis thaliana HOM05D007010 ORTHO05D008591 3.3e-07 58.9 35 65.7
Thhalv10027214m.g Eutrema salsugineum HOM05D007010 ORTHO05D008591 3.3e-07 58.9 118 37.3
FAN20G1932 Fragaria x ananassa HOM05D007010 ORTHO05D008591 3.3e-07 58.9 112 40.2
A08p17130 Brassica napus HOM05D007010 ORTHO05D008591 4.3e-07 58.5 165 32.7
CARHR201450 Cardamine hirsuta HOM05D007010 ORTHO05D008591 5.7e-07 58.2 35 62.9
HanXRQChr13g0410661 Helianthus annuus HOM05D007010 ORTHO05D008591 1.3e-06 57.0 139 41.0
MBI06_g20720_MAGBIO Magnolia biondii HOM05D007010 ORTHO05D008591 2.2e-06 56.2 161 32.3
Dinv27969 Davidia involucrata HOM05D007010 ORTHO05D008591 3.7e-06 55.5 119 38.7
Mapoly0094s0032 Marchantia polymorpha HOM05D007010 ORTHO05D008591 3.7e-06 55.5 144 31.9
vmacro00158 Vaccinium macrocarpon HOM05D007010 ORTHO05D008591 4.8e-06 55.1 118 35.6


User provided reference genes

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