Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1778 Punica granatum HOM05D007262 ORTHO05D008524 2.4e-119 432.2 218 100.0
Potri.018G091900 Populus trichocarpa HOM05D007262 ORTHO05D008524 2.6e-28 129.8 219 43.8
Haze_22091 Corylus avellana HOM05D007262 ORTHO05D008524 6.3e-27 125.2 204 43.6
Thecc.09G176800 Theobroma cacao HOM05D007262 ORTHO05D008524 4.1e-26 122.5 212 44.3
Cfa013501 Carpinus fangiana HOM05D007262 ORTHO05D008524 4.5e-25 119.0 203 43.3
Sabra18G0079000 Salix brachista HOM05D007262 ORTHO05D008524 5.0e-24 115.5 216 43.5
Manes.14G154200 Manihot esculenta HOM05D007262 ORTHO05D008524 1.4e-23 114.0 217 40.1
Atru.chr7.612 Acer truncatum HOM05D007262 ORTHO05D008524 1.9e-23 113.6 219 41.6
CiPaw.08G035900 Carya illinoinensis HOM05D007262 ORTHO05D008524 7.2e-23 111.7 218 40.8
RcHm_v2.0_Chr4g0402361 Rosa chinensis HOM05D007262 ORTHO05D008524 9.4e-23 111.3 209 42.6
TWI34G1693 Tripterygium wilfordii HOM05D007262 ORTHO05D008524 1.6e-22 110.5 218 38.5
Sabra06G0129200 Salix brachista HOM05D007262 ORTHO05D008524 2.1e-22 110.2 211 40.8
COL.COLO4_37717 Corchorus olitorius HOM05D007262 ORTHO05D008524 2.7e-22 109.8 206 40.8
Prupe.1G085200 Prunus persica HOM05D007262 ORTHO05D008524 2.7e-22 109.8 216 43.1
Hma1.2p1_1025F.1_g249350 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 7.9e-22 108.2 217 42.4
MD13G1252900 Malus domestica HOM05D007262 ORTHO05D008524 7.9e-22 108.2 210 42.9
Ciclev10010707m.g Citrus clementina HOM05D007262 ORTHO05D008524 8.8e-21 104.8 156 42.9
VMungo1215G2644 Vigna mungo HOM05D007262 ORTHO05D008524 5.7e-20 102.1 198 40.9
Potri.006G167300 Populus trichocarpa HOM05D007262 ORTHO05D008524 9.7e-20 101.3 220 37.3
Glyma.13G096700 Glycine max HOM05D007262 ORTHO05D008524 6.3e-19 98.6 203 38.4
Glyma.17G062800 Glycine max HOM05D007262 ORTHO05D008524 1.1e-18 97.8 200 40.5
Gohir.A13G212100 Gossypium hirsutum HOM05D007262 ORTHO05D008524 1.1e-18 97.8 199 39.7
Gorai.013G246500 Gossypium raimondii HOM05D007262 ORTHO05D008524 1.1e-18 97.8 199 36.7
MD16G1257400 Malus domestica HOM05D007262 ORTHO05D008524 1.4e-18 97.4 165 44.2
Phvul.003G145250 Phaseolus vulgaris HOM05D007262 ORTHO05D008524 1.4e-18 97.4 199 38.7
Sed0015293 Sechium edule HOM05D007262 ORTHO05D008524 1.4e-18 97.4 196 43.9
Lj4g0007156 Lotus japonicus HOM05D007262 ORTHO05D008524 5.3e-18 95.5 214 36.9
Gohir.D13G216200 Gossypium hirsutum HOM05D007262 ORTHO05D008524 7.0e-18 95.1 200 37.0
Hma1.2p1_0900F.1_g234550 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 7.0e-18 95.1 209 36.8
Sed0023592 Sechium edule HOM05D007262 ORTHO05D008524 9.1e-18 94.7 197 38.1
CiPaw.07G192600 Carya illinoinensis HOM05D007262 ORTHO05D008524 2.0e-17 93.6 151 47.0
Ah.14g083780 Amaranthus hybridus HOM05D007262 ORTHO05D008524 1.7e-16 90.5 209 34.4
ClCG11G012130 Citrullus lanatus HOM05D007262 ORTHO05D008524 1.7e-16 90.5 193 38.9
TAR383G0997 Trochodendron aralioides HOM05D007262 ORTHO05D008524 5.0e-16 89.0 230 36.5
Ca_21230_v3 Cicer arietinum L. HOM05D007262 ORTHO05D008524 6.5e-16 88.6 205 36.1
CsaV3_2G008430 Cucumis sativus L. HOM05D007262 ORTHO05D008524 6.5e-16 88.6 154 44.2
Peaxi162Scf00231g00727 Petunia axillaris HOM05D007262 ORTHO05D008524 8.5e-16 88.2 83 55.4
CANSAT11G0589 Cannabis sativa HOM05D007262 ORTHO05D008524 1.5e-15 87.4 207 38.2
MELO3C004021.2 Cucumis melo HOM05D007262 ORTHO05D008524 2.5e-15 86.7 172 39.0
Dinv41243 Davidia involucrata HOM05D007262 ORTHO05D008524 2.5e-15 86.7 100 51.0
Nitab4.5_0007075g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 1.2e-14 84.3 110 48.2
Nitab4.5_0012916g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 2.7e-14 83.2 130 41.5
CSS0001479 Camellia sinensis var. sinensis HOM05D007262 ORTHO05D008524 1.8e-13 80.5 166 40.4
EL10Ac8g18288 Beta vulgaris HOM05D023972 ORTHO05D008524 4.0e-13 79.3 81 50.6
Medtr4g127960 Medicago truncatula HOM05D007262 ORTHO05D008524 6.7e-13 78.6 152 40.8
HanXRQChr11g0322411 Helianthus annuus HOM05D007262 ORTHO05D008524 1.2e-12 77.8 170 35.3
Sc08g0005310 Simmondsia chinensis HOM05D007262 ORTHO05D008524 1.2e-12 77.8 183 37.7
Lsat_1_v5_gn_7_54640 Lactuca sativa HOM05D007262 ORTHO05D008524 1.5e-12 77.4 163 37.4
THA.LOC104811785 Tarenaya hassleriana HOM05D007262 ORTHO05D008524 1.5e-12 77.4 190 35.3
Lalb_Chr07g0180511 Lupinus albus HOM05D007262 ORTHO05D008524 5.7e-12 75.5 212 33.5
DCAR_009916 Daucus carota HOM05D007262 ORTHO05D008524 7.5e-12 75.1 121 45.5
Aa31LG3G13290 Aethionema arabicum HOM05D007262 ORTHO05D008524 3.7e-11 72.8 94 46.8
AL8G33380 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 3.7e-11 72.8 95 49.5
Nn8g40468 Nelumbo nucifera HOM05D007262 ORTHO05D008524 6.3e-11 72.0 226 34.5
CsaV3_1G031620 Cucumis sativus L. HOM05D007262 ORTHO05D008524 8.2e-11 71.6 73 60.3
BcaB05g22344 Brassica carinata HOM05D007262 ORTHO05D008524 1.1e-10 71.2 94 48.9
BcaC03g14155 Brassica carinata HOM05D007262 ORTHO05D008524 1.8e-10 70.5 94 47.9
A01p17120 Brassica napus HOM05D003168 ORTHO05D003590 2.4e-10 70.1 82 50.0
BraA01t01667Z Brassica rapa HOM05D003168 ORTHO05D003590 2.4e-10 70.1 82 50.0
AT5G57400 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 4.1e-10 69.3 192 33.3
BcaC09g50739 Brassica carinata HOM05D007262 ORTHO05D008524 4.1e-10 69.3 75 50.7
BolC1t02064H Brassica oleracea HOM05D003168 ORTHO05D003590 5.3e-10 68.9 82 48.8
arahy.Tifrunner.gnm1.ann1.7KD434 Arachis hypogaea HOM05D007262 ORTHO05D008524 7.0e-10 68.6 161 37.3
BcaB08g36097 Brassica carinata HOM05D007262 ORTHO05D008524 1.2e-09 67.8 93 47.3
CARHR271200 Cardamine hirsuta HOM05D007262 ORTHO05D008524 1.2e-09 67.8 92 42.4
ClCG06G013370 Citrullus lanatus HOM05D007262 ORTHO05D008524 1.6e-09 67.4 79 53.2
AT4G25845 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 2.0e-09 67.0 83 53.0
AT4G25850 Arabidopsis thaliana HOM05D003168 ORTHO05D003590 2.0e-09 67.0 83 53.0
C08p09700 Brassica napus HOM05D007262 ORTHO05D008524 2.7e-09 66.6 93 46.2
Lsat_1_v5_gn_8_67760 Lactuca sativa HOM05D007262 ORTHO05D008524 2.7e-09 66.6 93 47.3
Sp6g19120 Schrenkiella parvula HOM05D007262 ORTHO05D008524 2.7e-09 66.6 166 34.3
BcaNung04103 Brassica carinata HOM05D007262 ORTHO05D008524 4.5e-09 65.9 82 48.8
C02p14260 Brassica napus HOM05D007262 ORTHO05D008524 4.5e-09 65.9 174 34.5
BolC2t07550H Brassica oleracea HOM05D007262 ORTHO05D008524 4.5e-09 65.9 174 34.5
Thhalv10026951m.g Eutrema salsugineum HOM05D007262 ORTHO05D008524 4.5e-09 65.9 95 43.2
Carub.0007s1510 Capsella rubella HOM05D007262 ORTHO05D008524 5.9e-09 65.5 84 51.2
Sopen07g007460 Solanum pennellii HOM05D007262 ORTHO05D008524 5.9e-09 65.5 129 39.5
AL7G27180 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 1.0e-08 64.7 83 48.2
BraA02t05922Z Brassica rapa HOM05D007262 ORTHO05D008524 1.0e-08 64.7 173 34.1
A02p08490 Brassica napus HOM05D007262 ORTHO05D008524 1.7e-08 63.9 175 33.7
Aa31LG3G240 Aethionema arabicum HOM05D007262 ORTHO05D008524 2.2e-08 63.5 83 48.2
Nitab4.5_0007075g0020 Nicotiana tabacum HOM05D007262 ORTHO05D008524 2.9e-08 63.2 87 46.0
PGSC0003DMG400013783 Solanum tuberosum HOM05D007262 ORTHO05D008524 3.8e-08 62.8 76 47.4
SalBow6G4300 Salvia bowleyana HOM05D007262 ORTHO05D008524 5.0e-08 62.4 77 48.1
CARHR233310 Cardamine hirsuta HOM05D007262 ORTHO05D008524 6.5e-08 62.0 87 47.1
AUR62021304 Chenopodium quinoa HOM05D007262 ORTHO05D008524 8.5e-08 61.6 203 31.0
Solyc07g018310.4 Solanum lycopersicum HOM05D007262 ORTHO05D008524 8.5e-08 61.6 96 41.7
MELO3C017460.2 Cucumis melo HOM05D007262 ORTHO05D008524 1.5e-07 60.8 48 64.6
C01p21440 Brassica napus HOM05D007262 ORTHO05D008524 2.5e-07 60.1 170 34.1
ECA236G2076 Erigeron canadensis HOM05D007262 ORTHO05D008524 2.5e-07 60.1 91 42.9
Carub.0008s1792 Capsella rubella HOM05D007262 ORTHO05D008524 3.2e-07 59.7 72 50.0
DCAR_017972 Daucus carota HOM05D007262 ORTHO05D008524 3.2e-07 59.7 199 34.7
Oeu042172.1 Olea europaea HOM05D007262 ORTHO05D008524 4.2e-07 59.3 133 33.8
CiPaw.08G035800 Carya illinoinensis HOM05D007262 ORTHO05D008524 1.2e-06 57.8 116 39.7
Potri.013G083101 Populus trichocarpa HOM05D002277 ORTHO05D001770 2.7e-06 56.6 67 49.3
AUR62033222 Chenopodium quinoa HOM05D007262 ORTHO05D008524 3.6e-06 56.2 200 29.5
Glyma.02G259200 Glycine max HOM05D002277 ORTHO05D001770 3.6e-06 56.2 71 46.5
Sabra13G0072000 Salix brachista HOM05D002277 ORTHO05D001770 4.7e-06 55.8 79 43.0
SEGI_15643 Sequoiadendron giganteum HOM05D039678 ORTHO05D037599 4.7e-06 55.8 77 46.8
Cpa.g.sc233.5 Carica papaya HOM05D018436 ORTHO05D008524 6.1e-06 55.5 70 47.1
CiPaw.01G304400 Carya illinoinensis HOM05D002277 ORTHO05D001770 6.1e-06 55.5 98 38.8
COL.COLO4_03891 Corchorus olitorius HOM05D002277 ORTHO05D001770 6.1e-06 55.5 77 40.3
Duzib128G0618 Durio zibethinus HOM05D002277 ORTHO05D001770 8.0e-06 55.1 62 46.8
Migut.J01486 Erythranthe guttata HOM05D007262 ORTHO05D008524 8.0e-06 55.1 129 36.4
Glyma.14G053500 Glycine max HOM05D002277 ORTHO05D001770 8.0e-06 55.1 71 46.5
Gohir.A05G402100 Gossypium hirsutum HOM05D002277 ORTHO05D001770 8.0e-06 55.1 65 46.2
Gohir.D04G013500 Gossypium hirsutum HOM05D002277 ORTHO05D001770 8.0e-06 55.1 65 46.2
Gorai.012G015800 Gossypium raimondii HOM05D002277 ORTHO05D001770 8.0e-06 55.1 65 46.2
Lalb_Chr04g0250281 Lupinus albus HOM05D002277 ORTHO05D001770 8.0e-06 55.1 68 45.6


User provided reference genes

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