Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1758 Punica granatum HOM05D003899 ORTHO05D003655 2.9e-75 285.8 227 100.0
PGR002G0007 Punica granatum HOM05D003899 ORTHO05D003655 1.1e-55 220.7 227 85.9
PGR044G0858 Punica granatum HOM05D003899 ORTHO05D003655 4.1e-29 132.5 110 80.0
FvH4_2g14670 Fragaria vesca HOM05D003899 ORTHO05D003655 1.5e-18 97.4 73 67.1
FAN24G0119 Fragaria x ananassa HOM05D003899 ORTHO05D003655 1.5e-18 97.4 73 67.1
CANSAT25G0207 Cannabis sativa HOM05D003899 ORTHO05D003655 4.3e-18 95.9 73 65.8
FAN15G3500 Fragaria x ananassa HOM05D003899 ORTHO05D003655 5.6e-18 95.5 73 65.8
Thecc.08G144600 Theobroma cacao HOM05D003899 ORTHO05D003655 1.2e-17 94.4 72 66.7
Haze_17704 Corylus avellana HOM05D003899 ORTHO05D003655 1.6e-17 94.0 134 44.0
FAN20G0153 Fragaria x ananassa HOM05D003899 ORTHO05D003655 3.6e-17 92.8 71 66.2
RcHm_v2.0_Chr6g0277141 Rosa chinensis HOM05D003899 ORTHO05D003655 4.7e-17 92.4 74 64.9
Gohir.A02G066500 Gossypium hirsutum HOM05D003899 ORTHO05D003655 8.0e-17 91.7 73 64.4
Gorai.005G081600 Gossypium raimondii HOM05D003899 ORTHO05D003655 3.0e-16 89.7 73 67.1
Cfa018365 Carpinus fangiana HOM05D003899 ORTHO05D003655 6.8e-16 88.6 134 44.8
Prupe.8G018800 Prunus persica HOM05D003899 ORTHO05D003655 1.2e-15 87.8 71 60.6
PGR002G0009 Punica granatum HOM05D003899 ORTHO05D003655 2.0e-15 87.0 83 77.1
Gohir.A11G224804 Gossypium hirsutum HOM05D003899 ORTHO05D003655 5.7e-15 85.5 83 57.8
Actinidia06640 Actinidia chinensis HOM05D003899 ORTHO05D003655 9.8e-15 84.7 73 57.5
CsaV3_6G030980 Cucumis sativus L. HOM05D003899 ORTHO05D003655 2.2e-14 83.6 68 61.8
MD05G1014900 Malus domestica HOM05D003899 ORTHO05D003655 2.9e-14 83.2 73 56.2
MELO3C027328.2 Cucumis melo HOM05D003899 ORTHO05D003655 4.9e-14 82.4 67 62.7
Duzib041G0166 Durio zibethinus HOM05D003899 ORTHO05D003655 4.9e-14 82.4 71 60.6
QL06p029227 Quercus lobata HOM05D003899 ORTHO05D003655 4.9e-14 82.4 73 56.2
AUR62017911 Chenopodium quinoa HOM05D003899 ORTHO05D003655 6.4e-14 82.0 73 53.4
ClCG08G006450 Citrullus lanatus HOM05D000058 ORTHO05D000077 6.4e-14 82.0 127 43.3
HanXRQChr04g0125201 Helianthus annuus HOM05D003899 ORTHO05D003655 6.4e-14 82.0 118 44.1
Sed0026893 Sechium edule HOM05D003899 ORTHO05D003655 6.4e-14 82.0 67 62.7
Dinv24330 Davidia involucrata HOM05D003899 ORTHO05D003655 1.1e-13 81.3 73 54.8
TWI32G0122 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 1.1e-13 81.3 73 56.2
CiPaw.16G017800 Carya illinoinensis HOM05D003899 ORTHO05D003655 1.4e-13 80.9 73 63.0
QL02p025320 Quercus lobata HOM05D003899 ORTHO05D003655 1.8e-13 80.5 64 60.9
Ciclev10003780m.g Citrus clementina HOM05D003899 ORTHO05D003655 3.2e-13 79.7 73 53.4
PSO017G4320 Papaver somniferum HOM05D003899 ORTHO05D003655 3.2e-13 79.7 73 57.5
Manes.12G153900 Manihot esculenta HOM05D003899 ORTHO05D003655 5.4e-13 79.0 73 50.7
arahy.Tifrunner.gnm1.ann1.UE47UQ Arachis hypogaea HOM05D003899 ORTHO05D003655 9.2e-13 78.2 73 54.8
EL10Ac7g17632 Beta vulgaris HOM05D003899 ORTHO05D003655 9.2e-13 78.2 73 54.8
AUR62003600 Chenopodium quinoa HOM05D003899 ORTHO05D003655 9.2e-13 78.2 73 52.1
Glyma.14G121800 Glycine max HOM05D003899 ORTHO05D003655 1.2e-12 77.8 144 41.0
EL10Ac6g15278 Beta vulgaris HOM05D003899 ORTHO05D003655 1.6e-12 77.4 73 54.8
Lj1g0026176 Lotus japonicus HOM05D003899 ORTHO05D003655 1.6e-12 77.4 143 35.0
Nn5g28623 Nelumbo nucifera HOM05D003899 ORTHO05D003655 1.6e-12 77.4 73 58.9
CAN.G375.87 Capsicum annuum HOM05D003899 ORTHO05D003655 2.0e-12 77.0 73 49.3
Gohir.D11G228940 Gossypium hirsutum HOM05D003899 ORTHO05D003655 1.7e-11 73.9 64 56.2
Gorai.003G068900 Gossypium raimondii HOM05D003899 ORTHO05D003655 1.7e-11 73.9 64 56.2
Duzib264G1053 Durio zibethinus HOM05D003899 ORTHO05D003655 3.0e-11 73.2 125 40.8
Thhalv10012251m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 3.9e-11 72.8 71 59.2
AUR62043709 Chenopodium quinoa HOM05D003899 ORTHO05D003655 6.6e-11 72.0 64 54.7
Thhalv10012331m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 8.6e-11 71.6 71 49.3
Medtr1g029140 Medicago truncatula HOM05D003899 ORTHO05D003655 1.1e-10 71.2 134 33.6
Atru.chr4.839 Acer truncatum HOM05D003899 ORTHO05D003655 1.5e-10 70.9 73 52.1
AT5G48920 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 3.3e-10 69.7 83 56.6
A10p07750 Brassica napus HOM05D003899 ORTHO05D003655 5.6e-10 68.9 71 47.9
BolC6t35162H Brassica oleracea HOM05D003899 ORTHO05D003655 5.6e-10 68.9 71 47.9
BraSC36t46027Z Brassica rapa HOM05D003899 ORTHO05D003655 5.6e-10 68.9 71 47.9
PSO126G0001 Papaver somniferum HOM05D003899 ORTHO05D003655 5.6e-10 68.9 68 55.9
Psat6g033720 Pisum sativum HOM05D003899 ORTHO05D003655 5.6e-10 68.9 118 37.3
Psat6g039960 Pisum sativum HOM05D003899 ORTHO05D003655 5.6e-10 68.9 123 32.5
COL.COLO4_08943 Corchorus olitorius HOM05D003899 ORTHO05D003655 7.3e-10 68.6 53 62.3
Potri.005G060700 Populus trichocarpa HOM05D003899 ORTHO05D003655 7.3e-10 68.6 73 52.1
Thecc.01G128000 Theobroma cacao HOM05D003899 ORTHO05D003655 7.3e-10 68.6 73 49.3
DCAR_007049 Daucus carota HOM05D003899 ORTHO05D003655 9.5e-10 68.2 71 52.1
Oeu030532.1 Olea europaea HOM05D003899 ORTHO05D003655 9.5e-10 68.2 67 56.7
AT1G43790 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 1.2e-09 67.8 71 47.9
MSTRG.1375 Avicennia marina HOM05D003899 ORTHO05D003655 1.2e-09 67.8 70 54.3
Medtr1g008620 Medicago truncatula HOM05D003899 ORTHO05D003655 1.2e-09 67.8 69 52.2
PSO170G2020 Papaver somniferum HOM05D003899 ORTHO05D003655 1.2e-09 67.8 74 54.1
BcaB07g33974 Brassica carinata HOM05D003899 ORTHO05D003655 1.6e-09 67.4 71 46.5
CARHR046070 Cardamine hirsuta HOM05D003899 ORTHO05D003655 1.6e-09 67.4 63 58.7
Lalb_Chr25g0281721 Lupinus albus HOM05D003899 ORTHO05D003655 1.6e-09 67.4 120 40.0
AL1G51910 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 2.1e-09 67.0 71 46.5
Rhsim10G0136200 Rhododendron simsii HOM05D003899 ORTHO05D003655 2.8e-09 66.6 66 51.5
RhsimUnG0132700 Rhododendron simsii HOM05D003899 ORTHO05D003655 2.8e-09 66.6 66 51.5
Aqoxy5G02188 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 4.7e-09 65.9 131 35.1
SGA_v2.0_scaffold73G24343 Striga asiatica HOM05D003899 ORTHO05D003655 6.2e-09 65.5 73 52.1
THA.LOC104806849 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 1.0e-08 64.7 72 52.8
AL1G64600 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 1.4e-08 64.3 63 57.1
C06p00330 Brassica napus HOM05D003899 ORTHO05D003655 1.8e-08 63.9 73 42.5
CARHR035480 Cardamine hirsuta HOM05D003899 ORTHO05D003655 1.8e-08 63.9 71 45.1
Gohir.D02G072400 Gossypium hirsutum HOM05D003899 ORTHO05D003655 2.3e-08 63.5 74 54.1
Sp1g32910 Schrenkiella parvula HOM05D003899 ORTHO05D003655 3.1e-08 63.2 66 48.5
BcaB03g16849 Brassica carinata HOM05D003899 ORTHO05D003655 5.2e-08 62.4 61 55.7
Ca_12820_v3 Cicer arietinum L. HOM05D003899 ORTHO05D003655 5.2e-08 62.4 132 35.6
Potri.007G108100 Populus trichocarpa HOM05D003899 ORTHO05D003655 5.2e-08 62.4 134 36.6
Carub.0001s4477 Capsella rubella HOM05D003899 ORTHO05D003655 6.8e-08 62.0 61 55.7
Medtr1g008675 Medicago truncatula HOM05D003899 ORTHO05D003655 6.8e-08 62.0 61 49.2
Migut.N03236 Erythranthe guttata HOM05D003899 ORTHO05D003655 8.9e-08 61.6 70 51.4
Sed0020885 Sechium edule HOM05D003899 ORTHO05D003655 1.2e-07 61.2 68 50.0
MBI06_g43012_MAGBIO Magnolia biondii HOM05D003899 ORTHO05D003655 2.0e-07 60.5 73 50.7
ECA246G5022 Erigeron canadensis HOM05D003899 ORTHO05D003655 2.6e-07 60.1 71 43.7
BcaC08g42822 Brassica carinata HOM05D003899 ORTHO05D003655 3.4e-07 59.7 63 46.0
Lsat_1_v5_gn_5_108780 Lactuca sativa HOM05D003899 ORTHO05D003655 3.4e-07 59.7 72 44.4
TPR.G12083 Trifolium pratense HOM05D003899 ORTHO05D003655 3.4e-07 59.7 59 47.5
MELO3C023688.2 Cucumis melo HOM05D003899 ORTHO05D003655 4.4e-07 59.3 76 43.4
MD10G1014900 Malus domestica HOM05D003899 ORTHO05D003655 5.8e-07 58.9 63 52.4
Sp1g41920 Schrenkiella parvula HOM05D003899 ORTHO05D003655 9.8e-07 58.2 55 58.2
Dinv25809 Davidia involucrata HOM05D003899 ORTHO05D003655 1.7e-06 57.4 38 76.3
PGSC0003DMG400027629 Solanum tuberosum HOM05D003899 ORTHO05D003655 1.7e-06 57.4 73 45.2
COL.COLO4_14024 Corchorus olitorius HOM05D003899 ORTHO05D003655 2.2e-06 57.0 112 33.9
Sc02g0004420 Simmondsia chinensis HOM05D003899 ORTHO05D003655 2.2e-06 57.0 64 50.0
Solyc03g033290.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 2.9e-06 56.6 77 46.8
Carub.0001s3477 Capsella rubella HOM05D003899 ORTHO05D003655 3.7e-06 56.2 66 42.4
Psat6g033800 Pisum sativum HOM05D003899 ORTHO05D003655 3.7e-06 56.2 70 44.3


User provided reference genes

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