Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1750 Punica granatum HOM05D005120 ORTHO05D006174 9.5e-87 323.6 172 100.0
PGR042G0860 Punica granatum HOM05D005120 ORTHO05D006174 2.9e-59 232.3 145 89.0
Eucgr.E01259 Eucalyptus grandis HOM05D005120 ORTHO05D006174 3.3e-47 192.2 144 72.9
Haze_08107 Corylus avellana HOM05D005120 ORTHO05D006174 2.8e-46 189.1 144 72.9
Cfa012552 Carpinus fangiana HOM05D005120 ORTHO05D006174 8.1e-46 187.6 144 72.2
Duzib205G1724 Durio zibethinus HOM05D005120 ORTHO05D006174 9.9e-44 180.6 146 68.5
SGA_v2.0_scaffold42G16013 Striga asiatica HOM05D005120 ORTHO05D006174 2.9e-43 179.1 138 68.8
CiPaw.11G101100 Carya illinoinensis HOM05D005120 ORTHO05D006174 6.4e-43 177.9 144 70.1
Sp1g27750 Schrenkiella parvula HOM05D005120 ORTHO05D006174 6.4e-43 177.9 141 69.5
Prupe.5G024500 Prunus persica HOM05D005120 ORTHO05D006174 1.9e-42 176.4 143 68.5
Thecc.03G314000 Theobroma cacao HOM05D005120 ORTHO05D006174 2.4e-42 176.0 146 66.4
BcaC05g27233 Brassica carinata HOM05D005120 ORTHO05D006174 3.2e-42 175.6 145 68.3
Gohir.D03G177466 Gossypium hirsutum HOM05D005120 ORTHO05D006174 3.2e-42 175.6 146 65.8
Gorai.003G186700 Gossypium raimondii HOM05D005120 ORTHO05D006174 3.2e-42 175.6 146 65.8
CANSAT21G0750 Cannabis sativa HOM05D005120 ORTHO05D006174 4.2e-42 175.3 140 70.0
Manes.17G006500 Manihot esculenta HOM05D005120 ORTHO05D006174 9.3e-42 174.1 142 69.0
C05p31470 Brassica napus HOM05D005120 ORTHO05D006174 1.2e-41 173.7 145 67.6
BolC5t31871H Brassica oleracea HOM05D005120 ORTHO05D006174 1.2e-41 173.7 145 67.6
Sabra03G0067700 Salix brachista HOM05D005120 ORTHO05D006174 1.2e-41 173.7 141 70.2
CARHR031430 Cardamine hirsuta HOM05D005120 ORTHO05D006174 1.6e-41 173.3 140 67.9
Gohir.A03G000018 Gossypium hirsutum HOM05D005120 ORTHO05D006174 1.6e-41 173.3 146 65.1
THA.LOC104798500 Tarenaya hassleriana HOM05D005120 ORTHO05D006174 1.6e-41 173.3 144 66.7
Lj4g0011317 Lotus japonicus HOM05D005120 ORTHO05D006174 2.1e-41 172.9 139 69.8
Carub.0001s3040 Capsella rubella HOM05D005120 ORTHO05D006174 2.7e-41 172.6 145 66.9
MD06G1023600 Malus domestica HOM05D005120 ORTHO05D006174 2.7e-41 172.6 139 70.5
Potri.003G099600 Populus trichocarpa HOM05D005120 ORTHO05D006174 2.7e-41 172.6 142 69.0
BcaC05g27930 Brassica carinata HOM05D005120 ORTHO05D006174 3.5e-41 172.2 144 66.7
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 3.5e-41 172.2 144 66.7
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 3.5e-41 172.2 144 66.7
BraA09t38958Z Brassica rapa HOM05D005120 ORTHO05D006174 4.6e-41 171.8 141 68.1
Lj8A318T44 Lonicera japonica HOM05D005120 ORTHO05D006174 4.6e-41 171.8 141 65.2
QL12p000342 Quercus lobata HOM05D005120 ORTHO05D006174 4.6e-41 171.8 136 69.9
BcaB03g13768 Brassica carinata HOM05D005120 ORTHO05D006174 6.0e-41 171.4 144 66.7
Thhalv10007389m.g Eutrema salsugineum HOM05D005120 ORTHO05D006174 6.0e-41 171.4 144 66.7
TPR.G6179 Trifolium pratense HOM05D005120 ORTHO05D006174 6.0e-41 171.4 143 67.8
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 7.9e-41 171.0 144 66.7
A09p34100 Brassica napus HOM05D005120 ORTHO05D006174 1.0e-40 170.6 141 67.4
BraA05t21413Z Brassica rapa HOM05D005120 ORTHO05D006174 1.0e-40 170.6 144 66.0
Atru.chr6.1567 Acer truncatum HOM05D005120 ORTHO05D006174 1.8e-40 169.9 140 66.4
Cpa.g.sc757.1 Carica papaya HOM05D005120 ORTHO05D006174 1.8e-40 169.9 138 68.8
Lalb_Chr16g0391911 Lupinus albus HOM05D005120 ORTHO05D006174 1.8e-40 169.9 142 67.6
Medtr8g070830 Medicago truncatula HOM05D005120 ORTHO05D006174 1.8e-40 169.9 143 66.4
Aa31LG2G13920 Aethionema arabicum HOM05D005120 ORTHO05D006174 3.0e-40 169.1 143 67.8
BcaB07g32869 Brassica carinata HOM05D005120 ORTHO05D006174 3.0e-40 169.1 144 66.0
AUR62018612 Chenopodium quinoa HOM05D005120 ORTHO05D006174 3.0e-40 169.1 137 67.9
Oeu042231.1 Olea europaea HOM05D005120 ORTHO05D006174 3.0e-40 169.1 144 64.6
COL.COLO4_16896 Corchorus olitorius HOM05D005120 ORTHO05D006174 5.1e-40 168.3 136 68.4
RcHm_v2.0_Chr7g0212851 Rosa chinensis HOM05D005120 ORTHO05D006174 5.1e-40 168.3 141 66.0
AL1G46150 Arabidopsis lyrata HOM05D005120 ORTHO05D006174 6.7e-40 167.9 141 68.1
Lsat_1_v5_gn_6_17781 Lactuca sativa HOM05D005120 ORTHO05D006174 6.7e-40 167.9 140 65.7
Solyc08g076290.3 Solanum lycopersicum HOM05D005120 ORTHO05D006174 6.7e-40 167.9 135 68.1
Sopen08g024900 Solanum pennellii HOM05D005120 ORTHO05D006174 6.7e-40 167.9 135 68.1
TWI60G0565 Tripterygium wilfordii HOM05D005120 ORTHO05D006174 8.7e-40 167.5 139 67.6
HanXRQChr02g0050021 Helianthus annuus HOM05D005120 ORTHO05D006174 1.1e-39 167.2 140 66.4
AT1G32080 Arabidopsis thaliana HOM05D005120 ORTHO05D006174 1.5e-39 166.8 141 67.4
Dinv06901 Davidia involucrata HOM05D005120 ORTHO05D006174 1.5e-39 166.8 145 64.8
Atru.chr6.1566 Acer truncatum HOM05D005120 ORTHO05D006174 1.9e-39 166.4 140 65.0
Nn3g19343 Nelumbo nucifera HOM05D005120 ORTHO05D006174 2.5e-39 166.0 144 65.3
vmacro00236 Vaccinium macrocarpon HOM05D005120 ORTHO05D006174 2.5e-39 166.0 141 66.7
MSTRG.11896 Avicennia marina HOM05D005120 ORTHO05D006174 3.3e-39 165.6 145 62.8
Nitab4.5_0000543g0120 Nicotiana tabacum HOM05D005120 ORTHO05D006174 4.3e-39 165.2 142 66.2
Ciclev10003461m.g Citrus clementina HOM05D005120 ORTHO05D006174 7.4e-39 164.5 145 60.7
Cc08_g03980 Coffea canephora HOM05D005120 ORTHO05D006174 1.6e-38 163.3 131 67.2
MELO3C026723.2 Cucumis melo HOM05D005120 ORTHO05D006174 1.6e-38 163.3 142 64.8
Nn1g01918 Nelumbo nucifera HOM05D005120 ORTHO05D006174 1.6e-38 163.3 145 64.8
Rhsim11G0027600 Rhododendron simsii HOM05D005120 ORTHO05D006174 1.6e-38 163.3 145 61.4
arahy.Tifrunner.gnm1.ann1.H9FFKJ Arachis hypogaea HOM05D005120 ORTHO05D006174 2.1e-38 162.9 134 65.7
ECA233G2235 Erigeron canadensis HOM05D005120 ORTHO05D006174 6.2e-38 161.4 141 63.8
FAN04G0205 Fragaria x ananassa HOM05D005120 ORTHO05D006174 6.2e-38 161.4 141 62.4
Actinidia27272 Actinidia chinensis HOM05D005120 ORTHO05D006174 8.2e-38 161.0 145 62.1
arahy.Tifrunner.gnm1.ann1.PMQ83Q Arachis hypogaea HOM05D005120 ORTHO05D006174 1.1e-37 160.6 134 64.9
FAN08G2640 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.1e-37 160.6 141 62.4
ClCG07G002270 Citrullus lanatus HOM05D005120 ORTHO05D006174 1.4e-37 160.2 127 69.3
TAR374G0846 Trochodendron aralioides HOM05D005120 ORTHO05D006174 1.8e-37 159.8 144 63.2
GSVIVG01029984001 Vitis vinifera HOM05D005120 ORTHO05D006174 3.1e-37 159.1 127 70.9
Migut.A00586 Erythranthe guttata HOM05D005120 ORTHO05D006174 4.0e-37 158.7 146 63.0
MBI04_g36023_MAGBIO Magnolia biondii HOM05D005120 ORTHO05D006174 4.0e-37 158.7 140 65.7
CsaV3_3G030430 Cucumis sativus L. HOM05D005120 ORTHO05D006174 5.3e-37 158.3 142 64.1
Glyma.16G095100 Glycine max HOM05D005120 ORTHO05D006174 5.3e-37 158.3 127 69.3
Aqoxy7G00879 Aquilegia oxysepala HOM05D005120 ORTHO05D006174 6.9e-37 157.9 141 65.2
EL10Ac5g11981 Beta vulgaris HOM05D005120 ORTHO05D006174 6.9e-37 157.9 146 62.3
FvH4_5g23540 Fragaria vesca HOM05D005120 ORTHO05D006174 9.0e-37 157.5 141 62.4
Sed0007636 Sechium edule HOM05D005120 ORTHO05D006174 9.0e-37 157.5 122 69.7
FAN18G1216 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.2e-36 157.1 141 62.4
PGSC0003DMG402009291 Solanum tuberosum HOM05D005120 ORTHO05D006174 2.0e-36 156.4 119 72.3
FAN18G2593 Fragaria x ananassa HOM05D005120 ORTHO05D006174 2.6e-36 156.0 141 61.7
Sed0003941 Sechium edule HOM05D005120 ORTHO05D006174 2.6e-36 156.0 143 62.2
Atru.chr6.1569 Acer truncatum HOM05D005120 ORTHO05D006174 7.6e-36 154.5 139 60.4
DCAR_004262 Daucus carota HOM05D005120 ORTHO05D006174 7.6e-36 154.5 144 66.0
Psat4g111760 Pisum sativum HOM05D005120 ORTHO05D006174 2.2e-35 152.9 143 60.1
VMungo0251G1066 Vigna mungo HOM05D005120 ORTHO05D006174 2.2e-35 152.9 132 65.9
Aa31LG2G11060 Aethionema arabicum HOM05D005120 ORTHO05D006174 2.9e-35 152.5 113 73.5
Hund14388 Selenicereus undatus HOM05D005120 ORTHO05D006174 2.9e-35 152.5 153 58.8
CAN.G773.16 Capsicum annuum HOM05D005120 ORTHO05D006174 8.4e-35 151.0 105 79.0
Phvul.003G274000 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 3.2e-34 149.1 144 61.1
SGA_v2.0_scaffold89G27426 Striga asiatica HOM05D005120 ORTHO05D006174 4.2e-34 148.7 126 65.1
Ah.07g201110 Amaranthus hybridus HOM05D005120 ORTHO05D006174 5.5e-34 148.3 146 58.2
Dinv29029 Davidia involucrata HOM05D005120 ORTHO05D006174 7.1e-34 147.9 116 69.8
Nitab4.5_0006395g0010 Nicotiana tabacum HOM05D005120 ORTHO05D006174 7.1e-34 147.9 105 77.1
Sc07g0008440 Simmondsia chinensis HOM05D005120 ORTHO05D006174 7.1e-34 147.9 138 60.1
unitig_747.g21935 Utricularia gibba HOM05D005120 ORTHO05D006174 1.6e-33 146.7 144 58.3
SalBow1G1967 Salvia bowleyana HOM05D005120 ORTHO05D006174 2.7e-33 146.0 125 67.2
PSO717G0011 Papaver somniferum HOM05D005120 ORTHO05D006174 7.9e-33 144.4 149 57.7
Zm00001eb025160 Zea mays HOM05D005120 ORTHO05D006174 5.1e-32 141.7 140 56.4
PSO675G2578 Papaver somniferum HOM05D005120 ORTHO05D006174 6.7e-32 141.4 149 57.0
CDE06G0533 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 1.1e-31 140.6 144 56.9
Os01g0511600 Oryza sativa ssp. japonica HOM05D005120 ORTHO05D006174 1.1e-31 140.6 102 72.5
Peaxi162Scf00408g00023 Petunia axillaris HOM05D005120 ORTHO05D006174 7.4e-31 137.9 97 76.3
Glyma.09G211200 Glycine max HOM05D005120 ORTHO05D006174 1.6e-30 136.7 143 53.8
ATR0829G037 Amborella trichopoda HOM05D005120 ORTHO05D006174 2.8e-30 136.0 120 65.8
Zm00001eb025140 Zea mays HOM05D005120 ORTHO05D006174 1.1e-29 134.0 141 56.0
Ca_22546_v3 Cicer arietinum L. HOM05D005120 ORTHO05D006174 1.4e-29 133.7 90 81.1
Glyma.01G009900 Glycine max HOM05D005120 ORTHO05D006174 1.8e-29 133.3 143 52.4
SEGI_28661 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 1.2e-28 130.6 141 57.4
Phvul.002G132800 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 2.0e-28 129.8 115 61.7
Hund11160 Selenicereus undatus HOM05D005120 ORTHO05D006174 5.9e-28 128.3 107 66.4
CSS0018999 Camellia sinensis var. sinensis HOM05D005120 ORTHO05D006174 1.1e-26 124.0 90 72.2
AUR62007376 Chenopodium quinoa HOM05D005120 ORTHO05D006174 4.2e-26 122.1 84 76.2
CBR_g23153 Chara braunii HOM05D005120 ORTHO05D006174 4.6e-25 118.6 111 60.4
Mapoly0008s0007 Marchantia polymorpha HOM05D005120 ORTHO05D006174 6.1e-25 118.2 139 48.9
CARHR291910 Cardamine hirsuta HOM05D005120 ORTHO05D006174 1.9e-23 113.2 86 69.8
Lalb_Chr16g0380871 Lupinus albus HOM05D005120 ORTHO05D006174 1.9e-23 113.2 107 57.9
SMO347G0341 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 2.5e-23 112.8 100 62.0
AagrBONN_evm.TU.Sc2ySwM_117.3701 Anthoceros agrestis HOM05D005120 ORTHO05D006174 3.7e-22 109.0 102 56.9
arahy.Tifrunner.gnm1.ann1.B01XES Arachis hypogaea HOM05D005120 ORTHO05D006174 3.7e-22 109.0 130 50.8
Pp3c1_16500 Physcomitrium patens HOM05D005120 ORTHO05D006174 3.4e-20 102.4 123 51.2
Oeu023967.3 Olea europaea HOM05D005120 ORTHO05D006174 3.8e-19 99.0 98 57.1
arahy.Tifrunner.gnm1.ann1.1W9K9Y Arachis hypogaea HOM05D005120 ORTHO05D006174 6.5e-19 98.2 105 52.4
arahy.Tifrunner.gnm1.ann1.5B6WJ4 Arachis hypogaea HOM05D005120 ORTHO05D006174 6.5e-19 98.2 105 52.4
FAN13G2921 Fragaria x ananassa HOM05D005120 ORTHO05D006174 6.9e-13 78.2 75 60.0
Cre09.g394850 Chlamydomonas reinhardtii HOM05D005120 ORTHO05D006174 4.5e-12 75.5 119 42.9
Lalb_Chr16g0380881 Lupinus albus HOM05D005120 ORTHO05D006174 4.2e-10 68.9 110 38.2
PRCOL_00000663 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 6.1e-09 65.1 98 38.8
SMO367G1009 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 8.8e-08 61.2 78 39.7
PRCOL_00006607 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 2.0e-07 60.1 118 37.3


User provided reference genes

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