Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1713 Punica granatum HOM05D006307 ORTHO05D008123 3.1e-182 641.7 336 100.0
Thecc.10G187500 Theobroma cacao HOM05D006307 ORTHO05D008123 1.1e-83 314.3 345 54.2
Duzib114G0239 Durio zibethinus HOM05D006307 ORTHO05D008123 8.1e-82 308.1 345 53.0
COL.COLO4_19496 Corchorus olitorius HOM05D006307 ORTHO05D008123 1.9e-78 297.0 347 54.8
TWI09G1245 Tripterygium wilfordii HOM05D006307 ORTHO05D008123 7.8e-77 291.6 347 49.9
Gorai.012G012900 Gossypium raimondii HOM05D006307 ORTHO05D008123 1.1e-75 287.7 341 51.9
Dinv34513 Davidia involucrata HOM05D006307 ORTHO05D008123 3.3e-75 286.2 345 51.9
Gohir.A05G404900 Gossypium hirsutum HOM05D006307 ORTHO05D008123 3.3e-75 286.2 341 51.9
Eucgr.J00096 Eucalyptus grandis HOM05D006307 ORTHO05D008123 5.6e-75 285.4 356 51.7
Dinv21870 Davidia involucrata HOM05D006307 ORTHO05D008123 7.3e-75 285.0 348 50.0
TAR633G2235 Trochodendron aralioides HOM05D006307 ORTHO05D008123 2.1e-74 283.5 355 50.4
Nitab4.5_0000103g0020 Nicotiana tabacum HOM05D006307 ORTHO05D008123 6.2e-74 282.0 344 48.5
Ciclev10033529m.g Citrus clementina HOM05D006307 ORTHO05D008123 3.1e-73 279.6 345 51.3
Manes.07G141400 Manihot esculenta HOM05D006307 ORTHO05D008123 4.0e-73 279.3 343 51.9
PGSC0003DMG400005260 Solanum tuberosum HOM05D006307 ORTHO05D008123 4.0e-73 279.3 343 49.3
Actinidia01018 Actinidia chinensis HOM05D006307 ORTHO05D008123 5.2e-73 278.9 344 53.5
Cfa001179 Carpinus fangiana HOM05D006307 ORTHO05D008123 1.5e-72 277.3 355 54.1
GSVIVG01032869001 Vitis vinifera HOM05D006307 ORTHO05D008123 2.0e-72 276.9 345 50.4
Sabra19G0079000 Salix brachista HOM05D006307 ORTHO05D008123 2.6e-72 276.6 349 50.1
Gohir.D04G010800 Gossypium hirsutum HOM05D006307 ORTHO05D008123 7.6e-72 275.0 341 50.7
Haze_17382 Corylus avellana HOM05D006307 ORTHO05D008123 1.3e-71 274.2 346 51.7
Nitab4.5_0001493g0020 Nicotiana tabacum HOM05D006307 ORTHO05D008123 1.7e-71 273.9 344 48.5
Sopen03g025310 Solanum pennellii HOM05D006307 ORTHO05D008123 2.2e-71 273.5 343 48.7
CiPaw.01G088900 Carya illinoinensis HOM05D006307 ORTHO05D008123 6.4e-71 271.9 347 51.0
Potri.019G065500 Populus trichocarpa HOM05D006307 ORTHO05D008123 1.1e-70 271.2 345 50.1
Atru.chr12.221 Acer truncatum HOM05D006307 ORTHO05D008123 2.4e-70 270.0 376 46.0
Glyma.14G187500 Glycine max HOM05D006307 ORTHO05D008123 5.4e-70 268.9 344 47.7
Prupe.2G267300 Prunus persica HOM05D006307 ORTHO05D008123 7.1e-70 268.5 365 47.7
Ca_05544_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 9.2e-70 268.1 346 46.2
QL08p065320 Quercus lobata HOM05D006307 ORTHO05D008123 1.2e-69 267.7 359 50.4
CAN.G77.11 Capsicum annuum HOM05D006307 ORTHO05D008123 2.7e-69 266.5 370 44.6
MD01G1172000 Malus domestica HOM05D006307 ORTHO05D008123 2.7e-69 266.5 385 47.5
CANSAT56G1764 Cannabis sativa HOM05D006307 ORTHO05D008123 3.0e-68 263.1 386 45.6
Cpa.g.sc65.81 Carica papaya HOM05D006307 ORTHO05D008123 7.3e-67 258.5 345 49.9
Psat2g060080 Pisum sativum HOM05D006307 ORTHO05D008123 3.6e-66 256.1 338 45.9
Nn2g10220 Nelumbo nucifera HOM05D006307 ORTHO05D008123 6.2e-66 255.4 344 46.5
Glyma.02G220300 Glycine max HOM05D006307 ORTHO05D008123 9.0e-65 251.5 347 48.1
TWI73G0583 Tripterygium wilfordii HOM05D006307 ORTHO05D008123 2.0e-64 250.4 347 45.0
Rhsim09G0187400 Rhododendron simsii HOM05D006307 ORTHO05D008123 5.8e-64 248.8 363 45.2
FAN01G0868 Fragaria x ananassa HOM05D006307 ORTHO05D008123 3.8e-63 246.1 372 45.2
Phvul.008G187400 Phaseolus vulgaris HOM05D006307 ORTHO05D008123 3.8e-63 246.1 348 44.8
FvH4_7g26311 Fragaria vesca HOM05D006307 ORTHO05D008123 4.9e-63 245.7 372 45.2
arahy.Tifrunner.gnm1.ann1.8Y6D9P Arachis hypogaea HOM05D006307 ORTHO05D008123 2.4e-62 243.4 347 44.4
arahy.Tifrunner.gnm1.ann1.78S8ZN Arachis hypogaea HOM05D006307 ORTHO05D008123 3.2e-62 243.0 347 44.4
ECA233G0944 Erigeron canadensis HOM05D006307 ORTHO05D008123 2.7e-61 240.0 348 44.3
Eucgr.G03171 Eucalyptus grandis HOM05D006307 ORTHO05D008123 2.7e-61 240.0 346 49.1
HanXRQChr14g0441281 Helianthus annuus HOM05D006307 ORTHO05D008123 1.0e-60 238.0 346 44.8
Ah.12g064690 Amaranthus hybridus HOM05D006307 ORTHO05D008123 1.7e-60 237.3 367 45.2
LjContig00155g0000391 Lotus japonicus HOM05D006307 ORTHO05D008123 1.7e-60 237.3 345 45.2
RcHm_v2.0_Chr1g0372771 Rosa chinensis HOM05D006307 ORTHO05D008123 5.1e-60 235.7 388 43.6
EL10Ac2g02693 Beta vulgaris HOM05D006307 ORTHO05D008123 8.7e-60 235.0 350 48.0
THA.LOC104824373 Tarenaya hassleriana HOM05D006307 ORTHO05D008123 8.7e-60 235.0 357 45.4
Cc02_g05030 Coffea canephora HOM05D006307 ORTHO05D008123 5.6e-59 232.3 351 45.9
MSTRG.27248 Avicennia marina HOM05D006307 ORTHO05D008123 7.3e-59 231.9 348 47.7
AUR62032552 Chenopodium quinoa HOM05D006307 ORTHO05D008123 7.3e-59 231.9 366 43.2
Lalb_Chr08g0239321 Lupinus albus HOM05D006307 ORTHO05D008123 1.6e-58 230.7 345 43.8
VMungo0647G2347 Vigna mungo HOM05D006307 ORTHO05D008123 3.1e-57 226.5 355 43.4
Lsat_1_v5_gn_8_11140 Lactuca sativa HOM05D006307 ORTHO05D008123 6.9e-57 225.3 351 44.7
Ah.10g029650 Amaranthus hybridus HOM05D006307 ORTHO05D008123 1.5e-56 224.2 350 45.4
Lj1g0008062 Lotus japonicus HOM05D006307 ORTHO05D008123 5.8e-56 222.2 343 42.9
vmacro09945 Vaccinium macrocarpon HOM05D006307 ORTHO05D008123 2.4e-54 216.9 381 43.8
Medtr5g068530 Medicago truncatula HOM05D006307 ORTHO05D008123 1.2e-53 214.5 327 42.5
AL4G38760 Arabidopsis lyrata HOM05D006307 ORTHO05D008123 1.0e-52 211.5 356 44.4
Glyma.06G140100 Glycine max HOM05D006307 ORTHO05D008123 1.0e-52 211.5 348 43.1
PGR142G3034 Punica granatum HOM05D006307 ORTHO05D008123 1.8e-52 210.7 369 40.9
CDE04G1875 Ceratophyllum demersum HOM05D006307 ORTHO05D008123 8.7e-52 208.4 359 41.8
Carub.0004s2313 Capsella rubella HOM05D006307 ORTHO05D008123 4.3e-51 206.1 358 45.8
Sc11g0006110 Simmondsia chinensis HOM05D006307 ORTHO05D008123 4.3e-51 206.1 349 43.3
AUR62031669 Chenopodium quinoa HOM05D006307 ORTHO05D008123 7.4e-51 205.3 346 39.6
Lalb_Chr10g0102911 Lupinus albus HOM05D006307 ORTHO05D008123 7.4e-51 205.3 351 39.0
TPR.G27912 Trifolium pratense HOM05D006307 ORTHO05D008123 9.6e-51 204.9 359 43.7
A03p22960 Brassica napus HOM05D006307 ORTHO05D008123 1.6e-50 204.1 367 43.9
MD07G1238500 Malus domestica HOM05D006307 ORTHO05D008123 4.8e-50 202.6 154 65.6
Glyma.04G224600 Glycine max HOM05D006307 ORTHO05D008123 1.1e-49 201.4 348 42.8
Aa31LG3G1290 Aethionema arabicum HOM05D006307 ORTHO05D008123 2.0e-48 197.2 372 40.1
arahy.Tifrunner.gnm1.ann1.RI9J7M Arachis hypogaea HOM05D006307 ORTHO05D008123 3.4e-48 196.4 353 41.4
CARHR135930 Cardamine hirsuta HOM05D006307 ORTHO05D008123 3.4e-48 196.4 356 44.1
Thhalv10016922m.g Eutrema salsugineum HOM05D006307 ORTHO05D008123 1.3e-47 194.5 352 42.6
arahy.Tifrunner.gnm1.ann1.SS94V0 Arachis hypogaea HOM05D006307 ORTHO05D008123 4.9e-47 192.6 353 41.1
BolC3t15106H Brassica oleracea HOM05D006307 ORTHO05D008123 2.5e-46 190.3 376 41.5
C03p27240 Brassica napus HOM05D006307 ORTHO05D008123 3.2e-46 189.9 376 42.0
AT2G40815 Arabidopsis thaliana HOM05D006307 ORTHO05D008123 5.5e-46 189.1 373 41.6
Migut.F00561 Erythranthe guttata HOM05D006307 ORTHO05D008123 1.2e-45 188.0 344 41.3
Cc02_g04860 Coffea canephora HOM05D006307 ORTHO05D008123 3.5e-45 186.4 171 58.5
Phvul.009G041400 Phaseolus vulgaris HOM05D006307 ORTHO05D008123 3.5e-45 186.4 381 36.5
CSS0034849 Camellia sinensis var. sinensis HOM05D006307 ORTHO05D008123 4.6e-45 186.0 150 64.7
Medtr5g069320 Medicago truncatula HOM05D006307 ORTHO05D008123 1.0e-44 184.9 155 61.3
BraA03t11519Z Brassica rapa HOM05D006307 ORTHO05D008123 1.3e-44 184.5 365 41.4
Sp4g23140 Schrenkiella parvula HOM05D006307 ORTHO05D008123 6.7e-44 182.2 357 41.2
PSO339G5993 Papaver somniferum HOM05D006307 ORTHO05D008123 7.4e-43 178.7 172 54.1
Aqoxy4G03315 Aquilegia oxysepala HOM05D006307 ORTHO05D008123 1.3e-42 177.9 147 63.3
VMungo1309G1947 Vigna mungo HOM05D006307 ORTHO05D008123 1.3e-42 177.9 380 37.6
PSO384G0230 Papaver somniferum HOM05D006307 ORTHO05D008123 6.2e-42 175.6 173 53.2
Ca_16847_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 8.2e-42 175.3 322 38.5
SalBow3G4635 Salvia bowleyana HOM05D006307 ORTHO05D008123 1.4e-41 174.5 146 61.0
TPR.G13964 Trifolium pratense HOM05D006307 ORTHO05D008123 1.8e-41 174.1 332 38.3
BcaB01g03513 Brassica carinata HOM05D006307 ORTHO05D008123 4.0e-41 172.9 362 40.3
SGA_v2.0_scaffold60G20871 Striga asiatica HOM05D006307 ORTHO05D008123 4.0e-41 172.9 325 37.8
BraA03t11518Z Brassica rapa HOM05D006307 ORTHO05D008123 5.3e-41 172.6 253 45.1
Medtr3g093560 Medicago truncatula HOM05D006307 ORTHO05D008123 6.9e-41 172.2 327 37.0
A03p22950 Brassica napus HOM05D006307 ORTHO05D008123 9.0e-41 171.8 253 45.1
Os01g0818100 Oryza sativa ssp. japonica HOM05D006307 ORTHO05D008123 9.0e-41 171.8 354 36.7
BcaC01g05375 Brassica carinata HOM05D006307 ORTHO05D008123 6.5e-39 165.6 170 56.5
Zm00001eb149710 Zea mays HOM05D006307 ORTHO05D008123 6.5e-39 165.6 362 34.8
BolC3t15104H Brassica oleracea HOM05D006307 ORTHO05D008123 1.1e-38 164.9 351 41.0
C03p27220 Brassica napus HOM05D006307 ORTHO05D008123 3.2e-38 163.3 326 42.6
HPP92_019043 Vanilla planifolia HOM05D006307 ORTHO05D008123 7.4e-35 152.1 192 46.9
Solyc03g095300.4 Solanum lycopersicum HOM05D006307 ORTHO05D008123 9.7e-35 151.8 128 59.4
Psat5g070080 Pisum sativum HOM05D006307 ORTHO05D008123 4.1e-33 146.4 350 34.6
Actinidia31756 Actinidia chinensis HOM05D006307 ORTHO05D008123 2.0e-32 144.1 275 40.4
DCAR_018052 Daucus carota HOM05D006307 ORTHO05D009387 3.8e-31 139.8 316 36.7
ATR1127G014 Amborella trichopoda HOM05D006307 ORTHO05D008123 1.4e-30 137.9 149 51.7
Actinidia07776 Actinidia chinensis HOM05D006307 ORTHO05D008123 7.2e-30 135.6 148 54.1
C03p27230 Brassica napus HOM05D006307 ORTHO05D008123 6.3e-26 122.5 153 47.7
BolC3t15105H Brassica oleracea HOM05D006307 ORTHO05D008123 6.3e-26 122.5 153 47.7
BcaB01g03514 Brassica carinata HOM05D006307 ORTHO05D008123 1.2e-24 118.2 226 36.7
BcaC01g05374 Brassica carinata HOM05D006307 ORTHO05D008123 1.5e-24 117.9 171 44.4
SEGI_32602 Sequoiadendron giganteum HOM05D006307 ORTHO05D008123 1.0e-20 105.1 312 32.4
CAN.G70.11 Capsicum annuum HOM05D006307 ORTHO05D008123 8.2e-18 95.5 105 51.4
Lj4g0001384 Lotus japonicus HOM05D006307 ORTHO05D008123 9.7e-11 72.0 154 34.4
C09p00760 Brassica napus HOM05D001977 ORTHO05D002246 7.7e-08 62.4 141 32.6
BolC9t53010H Brassica oleracea HOM05D001977 ORTHO05D002246 7.7e-08 62.4 141 32.6
BraA09t35742Z Brassica rapa HOM05D001977 ORTHO05D002246 7.7e-08 62.4 141 32.6
Phvul.006G104400 Phaseolus vulgaris HOM05D001109 ORTHO05D001051 1.0e-07 62.0 170 27.6
Ciclev10021815m.g Citrus clementina HOM05D001109 ORTHO05D001051 2.2e-07 60.8 143 30.1
Medtr5g068540 Medicago truncatula HOM05D000512 ORTHO05D000861 2.2e-07 60.8 122 44.3
Aa31LG5G800 Aethionema arabicum HOM05D001977 ORTHO05D002246 3.8e-07 60.1 142 31.7
Nn6g34872 Nelumbo nucifera HOM05D001109 ORTHO05D001051 5.0e-07 59.7 77 39.0
VMungo0540G1223 Vigna mungo HOM05D001109 ORTHO05D001051 5.0e-07 59.7 128 31.2
CSS0037764 Camellia sinensis var. sinensis HOM05D006307 ORTHO05D008123 6.5e-07 59.3 181 32.0
COL.COLO4_15517 Corchorus olitorius HOM05D001109 ORTHO05D001051 1.1e-06 58.5 135 27.4
SEGI_27303 Sequoiadendron giganteum HOM05D002301 ORTHO05D002316 1.5e-06 58.2 132 28.0
Thhalv10028892m.g Eutrema salsugineum HOM05D001109 ORTHO05D001051 1.9e-06 57.8 141 29.8
CARHR249100 Cardamine hirsuta HOM05D001109 ORTHO05D001051 4.2e-06 56.6 141 29.8
Dinv24656 Davidia involucrata HOM05D001109 ORTHO05D001051 5.5e-06 56.2 173 26.0
Cpa.g.sc107.88 Carica papaya HOM05D002301 ORTHO05D002316 7.2e-06 55.8 132 29.5
PGR031G2213 Punica granatum HOM05D001109 ORTHO05D001051 7.2e-06 55.8 140 30.0
PGR031G3366 Punica granatum HOM05D001109 ORTHO05D001051 7.2e-06 55.8 140 30.0
SMO351G0155 Selaginella moellendorffii HOM05D001109 ORTHO05D002316 9.4e-06 55.5 85 37.6


User provided reference genes

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