Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 0.0e+00 1798.1 902 100.0
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 0.0e+00 1286.2 892 74.1
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 0.0e+00 1280.0 906 73.5
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 0.0e+00 1267.7 904 71.7
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 0.0e+00 1256.1 900 71.1
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 0.0e+00 1254.6 897 71.9
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1244.6 896 70.5
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 0.0e+00 1243.8 944 67.9
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1242.6 920 70.7
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1241.1 898 71.0
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1236.9 901 70.8
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 0.0e+00 1234.6 849 73.5
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1233.0 901 70.5
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 0.0e+00 1232.6 896 70.2
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1232.6 901 70.7
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1229.9 896 69.8
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1228.4 839 73.1
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 0.0e+00 1228.0 897 70.3
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 0.0e+00 1226.1 911 68.7
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 0.0e+00 1221.5 908 69.7
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1220.3 905 70.2
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1219.1 927 68.5
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1217.6 905 70.4
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1207.2 900 69.3
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 0.0e+00 1195.6 891 69.6
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1194.9 900 68.8
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1194.9 919 68.3
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1190.3 905 68.5
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1189.1 918 68.1
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1188.3 901 68.6
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 0.0e+00 1187.9 908 68.1
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1187.6 899 69.0
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1185.2 904 68.0
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1184.5 886 68.3
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1183.7 903 68.1
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1181.8 901 68.0
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 0.0e+00 1181.0 908 68.0
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1181.0 900 67.6
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 0.0e+00 1179.5 892 68.9
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 0.0e+00 1178.7 906 66.9
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1177.5 898 67.4
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 0.0e+00 1177.2 903 67.8
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1176.8 901 68.0
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1176.0 905 67.7
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1174.1 919 66.6
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 0.0e+00 1173.3 900 67.2
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1172.5 885 68.8
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1169.8 895 67.4
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1167.5 925 65.5
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 0.0e+00 1162.5 896 67.2
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 0.0e+00 1162.1 900 67.1
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1161.7 924 66.0
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1159.4 895 67.3
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1156.7 920 65.3
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 0.0e+00 1156.4 899 66.7
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 0.0e+00 1156.4 802 72.6
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1155.2 897 67.3
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1152.5 905 67.0
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 0.0e+00 1152.1 894 66.6
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1149.0 897 67.1
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1147.5 899 66.6
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1147.5 901 64.5
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1145.6 923 65.3
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 0.0e+00 1143.6 897 66.4
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1141.3 922 65.1
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 0.0e+00 1140.2 897 65.7
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 0.0e+00 1139.4 818 70.5
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 0.0e+00 1138.6 905 64.8
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 0.0e+00 1138.6 818 70.5
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1135.2 891 65.5
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1133.6 902 65.5
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1133.2 896 65.7
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 0.0e+00 1132.9 911 64.8
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 0.0e+00 1130.5 807 71.0
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 0.0e+00 1130.2 903 65.3
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1126.3 900 65.4
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1122.8 898 66.0
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1121.3 896 65.6
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1117.8 909 65.8
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 0.0e+00 1116.3 921 64.6
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1114.0 902 63.4
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1111.3 894 65.0
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1108.6 898 65.3
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1104.0 906 64.9
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1103.2 741 74.6
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1102.8 894 65.0
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 0.0e+00 1100.9 904 64.3
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 0.0e+00 1100.5 930 62.2
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 0.0e+00 1099.0 900 63.3
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 0.0e+00 1097.0 895 64.7
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 0.0e+00 1096.3 906 64.8
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 0.0e+00 1094.0 904 64.9
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 0.0e+00 1085.5 912 61.7
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 0.0e+00 1085.1 860 65.7
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 0.0e+00 1084.7 907 64.5
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 0.0e+00 1083.9 906 64.1
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 0.0e+00 1081.6 920 63.2
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 0.0e+00 1081.2 904 64.2
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 0.0e+00 1079.3 903 64.6
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 0.0e+00 1077.8 907 64.1
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 0.0e+00 1077.4 904 63.9
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1077.0 898 63.6
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 0.0e+00 1075.1 904 63.9
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 1.2e-311 1072.8 847 64.7
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 1.9e-311 1072.4 898 62.8
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 2.7e-310 1068.5 914 62.1
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 2.0e-308 1062.4 904 65.2
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 2.0e-308 1062.4 819 67.8
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 4.4e-308 1061.2 905 63.4
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 1.4e-306 1056.2 976 57.5
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 7.0e-306 1053.9 895 62.3
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 1.2e-305 1053.1 854 64.3
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 5.9e-305 1050.8 905 61.0
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 1.0e-304 1050.0 901 62.5
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 2.7e-302 1042.0 851 64.3
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 2.6e-300 1035.4 791 68.1
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 2.8e-299 1031.9 895 62.0
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 1.6e-294 1016.1 924 60.6
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 1.7e-291 1006.1 895 59.3
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 2.5e-287 992.3 849 63.3
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 3.3e-287 991.9 914 59.0
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 1.7e-283 979.5 831 61.5
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 3.2e-282 975.3 635 76.4
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 2.7e-281 972.2 884 60.5
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 1.3e-280 969.9 839 61.0
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 2.8e-278 962.2 933 56.7
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 3.1e-277 958.7 931 55.7
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 6.4e-275 951.0 587 79.0
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 3.3e-271 938.7 985 54.2
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 3.7e-267 925.2 856 58.1
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 1.4e-258 896.7 938 53.9
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 8.1e-254 880.9 806 57.2
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 4.0e-253 878.6 817 58.1
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 8.4e-251 870.9 875 53.0
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 9.6e-247 857.4 900 52.3
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 4.8e-246 855.1 824 55.5
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 3.4e-244 849.0 849 54.5
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 1.7e-243 846.7 814 53.9
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 5.6e-239 831.6 826 54.5
Ah.02g111890 Amaranthus hybridus HOM05D003973 ORTHO05D004679 1.4e-234 817.0 803 54.7
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 1.1e-229 800.8 620 64.8
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 3.4e-212 742.7 791 49.1
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 5.9e-212 741.9 600 65.3
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 3.7e-206 722.6 828 47.0
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 1.5e-204 717.2 574 61.7
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 6.3e-198 695.3 589 56.0
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 5.5e-194 682.2 634 59.5
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 6.3e-190 668.7 634 58.5
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 1.8e-184 650.6 611 53.2
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 3.6e-169 599.7 580 56.7
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 4.6e-164 582.8 798 43.4
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 1.6e-145 521.2 569 47.8
MBI18_g15332_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 7.6e-143 512.3 530 57.7
AUR62024729 Chenopodium quinoa HOM05D003973 ORTHO05D004679 4.3e-138 496.5 431 60.1
MCO05G121 Micromonas commoda HOM05D003973 ORTHO05D004679 5.5e-117 426.4 599 38.7
CDE02G3928 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 7.6e-111 406.0 514 45.3
BcaB06g28438 Brassica carinata HOM05D003973 ORTHO05D004679 8.5e-102 375.9 424 53.1
CDE06G1379 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 2.0e-95 354.8 442 47.1
BolC4t23456H Brassica oleracea HOM05D003973 ORTHO05D004679 3.4e-95 354.0 264 66.7
Cre09.g391500 Chlamydomonas reinhardtii HOM05D003973 ORTHO05D004679 3.6e-92 344.0 700 31.6
CDE06G1301 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 3.0e-83 314.3 225 67.6
C04p19230 Brassica napus HOM05D003973 ORTHO05D004679 1.0e-78 299.3 264 59.8
Cfa025050 Carpinus fangiana HOM05D003973 ORTHO05D004679 7.2e-69 266.5 520 32.3
BcaC02g11207 Brassica carinata HOM05D003973 ORTHO05D004679 1.6e-68 265.4 175 73.1
PRCOL_00006952 Prasinoderma coloniale HOM05D003973 ORTHO05D004679 2.0e-63 248.4 503 31.0
Hund02908 Selenicereus undatus HOM05D003973 ORTHO05D004679 4.5e-55 220.7 157 70.7
Psat2g015440 Pisum sativum HOM05D003973 ORTHO05D004679 1.3e-33 149.4 186 51.6
Sc17g0000730 Simmondsia chinensis HOM05D003973 ORTHO05D004679 2.1e-28 132.1 217 41.9
BcaB06g28437 Brassica carinata HOM05D003973 ORTHO05D004679 7.3e-21 107.1 66 77.3
AagrBONN_evm.TU.Sc2ySwM_344.134 Anthoceros agrestis HOM05D003973 ORTHO05D004679 2.4e-19 102.1 78 62.8
CSS0024912 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 1.2e-18 99.8 74 66.2
Hund02909 Selenicereus undatus HOM05D003973 ORTHO05D004679 7.1e-16 90.5 118 46.6
VMungo0720G0978 Vigna mungo HOM05D003973 ORTHO05D435101 1.6e-15 89.4 184 33.7
VMungo0251G0786 Vigna mungo HOM05D003973 ORTHO05D432747 6.6e-14 84.0 78 59.0


User provided reference genes

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