Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1600 Punica granatum HOM05D008057 ORTHO05D003476 6.6e-174 614.0 323 100.0
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 2.5e-32 143.7 356 35.4
Sabra18G0127300 Salix brachista HOM05D008057 ORTHO05D003476 4.3e-32 142.9 336 34.2
Eucgr.K02337 Eucalyptus grandis HOM05D008057 ORTHO05D003476 4.8e-31 139.4 318 35.8
Dinv22201 Davidia involucrata HOM05D008057 ORTHO05D003476 2.4e-30 137.1 326 36.2
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 4.5e-29 132.9 353 34.6
Potri.018G151900 Populus trichocarpa HOM05D008057 ORTHO05D003476 2.4e-27 127.1 297 35.4
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 1.3e-25 121.3 291 31.6
TAR311G0002 Trochodendron aralioides HOM05D008057 ORTHO05D003476 1.1e-24 118.2 312 32.4
Atru.chr9.28 Acer truncatum HOM05D008057 ORTHO05D003476 1.9e-24 117.5 305 33.1
TWI81G0899 Tripterygium wilfordii HOM05D008057 ORTHO05D003476 2.5e-24 117.1 345 33.9
TAR629G2050 Trochodendron aralioides HOM05D008057 ORTHO05D003476 2.5e-24 117.1 310 31.6
CiPaw.16G075800 Carya illinoinensis HOM05D008057 ORTHO05D003476 1.6e-23 114.4 354 30.8
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 2.1e-23 114.0 308 32.1
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 6.9e-22 109.0 328 31.7
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 1.5e-21 107.8 344 30.8
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 2.6e-21 107.1 293 32.1
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 3.4e-21 106.7 293 31.4
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 3.4e-21 106.7 358 30.7
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 4.5e-21 106.3 344 30.5
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 1.3e-20 104.8 169 41.4
Sed0002498 Sechium edule HOM05D008057 ORTHO05D003476 1.1e-19 101.7 313 31.6
QL10p035701 Quercus lobata HOM05D008057 ORTHO05D003476 1.4e-19 101.3 307 31.9
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 1.9e-19 100.9 93 53.8
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 3.2e-19 100.1 337 30.6
MELO3C020667.2 Cucumis melo HOM05D008057 ORTHO05D003476 5.5e-19 99.4 297 32.7
COL.COLO4_33681 Corchorus olitorius HOM05D002656 ORTHO05D003062 9.3e-19 98.6 351 28.5
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 2.1e-18 97.4 300 31.3
Nn3g18533 Nelumbo nucifera HOM05D008057 ORTHO05D003476 2.7e-18 97.1 375 27.7
Lj2g0026608 Lotus japonicus HOM05D008057 ORTHO05D003476 3.5e-18 96.7 351 28.2
Ciclev10020800m.g Citrus clementina HOM05D008057 ORTHO05D003476 7.9e-18 95.5 337 31.8
Rhsim10G0138900 Rhododendron simsii HOM05D008057 ORTHO05D003476 1.3e-17 94.7 302 30.1
Aqoxy3G04343 Aquilegia oxysepala HOM05D008057 ORTHO05D003476 3.0e-17 93.6 276 34.1
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 6.7e-17 92.4 320 29.4
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 1.5e-16 91.3 322 31.1
SGA_v2.0_scaffold14G06996 Striga asiatica HOM05D008057 ORTHO05D003476 2.5e-16 90.5 307 26.4
Migut.N02713 Erythranthe guttata HOM05D008057 ORTHO05D003476 3.3e-16 90.1 296 27.4
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 7.4e-16 89.0 352 28.7
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 9.7e-16 88.6 322 28.6
Nitab4.5_0008182g0020 Nicotiana tabacum HOM05D008057 ORTHO05D003476 1.3e-15 88.2 306 29.1
Sopen03g029780 Solanum pennellii HOM05D008057 ORTHO05D003476 2.8e-15 87.0 293 27.6
Lalb_Chr14g0370111 Lupinus albus HOM05D008057 ORTHO05D003476 2.4e-14 84.0 247 27.5
Psat1g117960 Pisum sativum HOM05D008057 ORTHO05D003476 3.1e-14 83.6 428 25.5
unitig_746.g26880 Utricularia gibba HOM05D008057 ORTHO05D003476 3.1e-14 83.6 322 29.2
DCAR_014755 Daucus carota HOM05D008057 ORTHO05D003476 6.9e-14 82.4 88 47.7
FvH4_5g27110 Fragaria vesca HOM05D015681 ORTHO05D003476 6.9e-14 82.4 341 28.2
arahy.Tifrunner.gnm1.ann1.1W7ASM Arachis hypogaea HOM05D008057 ORTHO05D003476 9.0e-14 82.0 333 28.5
Haze_18401 Corylus avellana HOM05D008057 ORTHO05D003476 9.0e-14 82.0 280 27.5
Solyc03g019840.4 Solanum lycopersicum HOM05D008057 ORTHO05D003476 2.0e-13 80.9 293 26.6
ECA233G4523 Erigeron canadensis HOM05D008057 ORTHO05D003476 2.6e-13 80.5 123 42.3
SGA_v2.0_scaffold28G11776 Striga asiatica HOM05D008057 ORTHO05D003476 2.6e-13 80.5 89 47.2
EL10Ac9g22929 Beta vulgaris HOM05D008057 ORTHO05D003476 3.4e-13 80.1 324 28.1
VMungo0464G0225 Vigna mungo HOM05D008057 ORTHO05D003476 4.5e-13 79.7 67 56.7
PGSC0003DMG401015209 Solanum tuberosum HOM05D008057 ORTHO05D003476 7.7e-13 79.0 291 27.1
arahy.Tifrunner.gnm1.ann1.RQNS35 Arachis hypogaea HOM05D008057 ORTHO05D003476 1.0e-12 78.6 333 28.2
FAN18G3766 Fragaria x ananassa HOM05D015681 ORTHO05D003476 1.0e-12 78.6 331 27.8
Lsat_1_v5_gn_8_540 Lactuca sativa HOM05D008057 ORTHO05D003476 1.0e-12 78.6 290 26.2
Ah.09g232210 Amaranthus hybridus HOM05D002613 ORTHO05D003140 1.7e-12 77.8 93 46.2
FAN08G2522 Fragaria x ananassa HOM05D015681 ORTHO05D003476 2.2e-12 77.4 340 26.8
Glyma.09G160700 Glycine max HOM05D008057 ORTHO05D003476 2.9e-12 77.0 216 29.6
Sed0004109 Sechium edule HOM05D008057 ORTHO05D003476 2.9e-12 77.0 296 29.4
HPP92_025600 Vanilla planifolia HOM05D061565 ORTHO05D003476 2.9e-12 77.0 326 27.3
Phvul.004G136200 Phaseolus vulgaris HOM05D008057 ORTHO05D003476 3.8e-12 76.6 79 48.1
Prupe.8G056400 Prunus persica HOM05D015681 ORTHO05D003476 3.8e-12 76.6 377 25.7
Hund06726 Selenicereus undatus HOM05D008057 ORTHO05D003476 1.9e-11 74.3 145 33.1
MD10G1047400 Malus domestica HOM05D015681 ORTHO05D003476 4.2e-11 73.2 288 27.1
Oeu050291.1 Olea europaea HOM05D008057 ORTHO05D003476 5.5e-11 72.8 193 32.6
Duzib084G1007 Durio zibethinus HOM05D008057 ORTHO05D003476 3.6e-10 70.1 344 26.7
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 6.1e-10 69.3 59 55.9
BcaB01g04549 Brassica carinata HOM05D012436 ORTHO05D003476 6.1e-10 69.3 186 32.8
BolC3t13894H Brassica oleracea HOM05D012436 ORTHO05D003476 6.1e-10 69.3 186 32.8
Zm00001eb248340 Zea mays HOM05D046263 ORTHO05D003476 7.9e-10 68.9 81 40.7
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 1.4e-09 68.2 59 55.9
FAN04G2538 Fragaria x ananassa HOM05D015681 ORTHO05D003476 1.8e-09 67.8 328 25.0
C03p14510 Brassica napus HOM05D012436 ORTHO05D003476 2.3e-09 67.4 76 50.0
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 3.0e-09 67.0 77 41.6
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 3.0e-09 67.0 55 60.0
Glyma.16G210200 Glycine max HOM05D008057 ORTHO05D003476 3.0e-09 67.0 294 28.2
Sc12g0007990 Simmondsia chinensis HOM05D008057 ORTHO05D003476 3.0e-09 67.0 125 35.2
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 3.9e-09 66.6 56 55.4
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 3.9e-09 66.6 81 33.3
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 6.7e-09 65.9 77 39.0
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 6.7e-09 65.9 101 34.7
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 6.7e-09 65.9 317 23.0
HanXRQChr08g0226101 Helianthus annuus HOM05D008057 ORTHO05D003476 8.8e-09 65.5 294 26.5
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 8.8e-09 65.5 77 39.0
vmacro12841 Vaccinium macrocarpon HOM05D008057 ORTHO05D003476 8.8e-09 65.5 262 27.5
Os02g0638000 Oryza sativa ssp. japonica HOM05D008057 ORTHO05D003476 1.1e-08 65.1 341 22.6
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 1.1e-08 65.1 192 27.1
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 1.5e-08 64.7 77 37.7
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 1.5e-08 64.7 77 39.0
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 1.5e-08 64.7 102 34.3
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 1.9e-08 64.3 77 39.0
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 1.9e-08 64.3 77 39.0
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 2.5e-08 63.9 77 40.3
A03p12360 Brassica napus HOM05D012436 ORTHO05D003476 3.3e-08 63.5 152 33.6
Carub.0008s1875 Capsella rubella HOM05D012436 ORTHO05D003476 3.3e-08 63.5 54 53.7
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 3.3e-08 63.5 77 40.3
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 3.3e-08 63.5 77 39.0
Gohir.D01G118500 Gossypium hirsutum HOM05D006793 ORTHO05D003476 3.3e-08 63.5 77 39.0
Gorai.002G144500 Gossypium raimondii HOM05D006793 ORTHO05D003476 3.3e-08 63.5 77 39.0
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 4.3e-08 63.2 77 40.3
Cfa001770 Carpinus fangiana HOM05D006793 ORTHO05D003476 4.3e-08 63.2 71 39.4
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 4.3e-08 63.2 71 39.4
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 4.3e-08 63.2 71 40.8
RcHm_v2.0_Chr7g0218101 Rosa chinensis HOM05D015681 ORTHO05D003476 4.3e-08 63.2 405 24.4
BraA03t10548Z Brassica rapa HOM05D012436 ORTHO05D003476 5.7e-08 62.8 231 30.7
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 5.7e-08 62.8 77 41.6
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 5.7e-08 62.8 77 39.0
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 5.7e-08 62.8 71 42.3
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 5.7e-08 62.8 71 42.3
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 5.7e-08 62.8 77 39.0
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 7.4e-08 62.4 91 36.3
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 7.4e-08 62.4 71 39.4
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 7.4e-08 62.4 152 30.3
CsaV3_2G032770 Cucumis sativus L. HOM05D006793 ORTHO05D003476 7.4e-08 62.4 77 39.0
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 7.4e-08 62.4 71 40.8
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 7.4e-08 62.4 71 43.7
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 7.4e-08 62.4 77 39.0
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 9.7e-08 62.0 77 40.3
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 9.7e-08 62.0 76 38.2
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 9.7e-08 62.0 83 37.3
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 9.7e-08 62.0 83 37.3
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 1.3e-07 61.6 77 37.7
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 1.3e-07 61.6 77 40.3
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 1.7e-07 61.2 77 40.3
CDE03G0520 Ceratophyllum demersum HOM05D048142 ORTHO05D003476 2.2e-07 60.8 80 35.0
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 2.2e-07 60.8 80 37.5
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 2.2e-07 60.8 77 39.0
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 2.2e-07 60.8 77 36.4
SGA_v2.0_scaffold62G21362 Striga asiatica HOM05D006793 ORTHO05D003476 2.2e-07 60.8 77 39.0
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 2.2e-07 60.8 77 39.0
Duzib128G0427 Durio zibethinus HOM05D006793 ORTHO05D003476 2.8e-07 60.5 77 37.7
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 2.8e-07 60.5 81 40.7
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 2.8e-07 60.5 70 42.9
AagrBONN_evm.TU.Sc2ySwM_369.432 Anthoceros agrestis HOM05D008307 ORTHO05D010374 3.7e-07 60.1 91 38.5
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 3.7e-07 60.1 77 40.3
Sp6g19870 Schrenkiella parvula HOM05D012436 ORTHO05D003476 3.7e-07 60.1 311 27.3
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 4.8e-07 59.7 71 39.4
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 4.8e-07 59.7 77 40.3
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 4.8e-07 59.7 98 36.7
PSO063G6649 Papaver somniferum HOM05D045975 ORTHO05D003476 4.8e-07 59.7 80 36.2
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 6.3e-07 59.3 55 49.1
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 8.2e-07 58.9 71 38.0
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 8.2e-07 58.9 71 39.4
HPP92_027826 Vanilla planifolia HOM05D006793 ORTHO05D003476 8.2e-07 58.9 100 34.0
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 1.1e-06 58.5 71 38.0
BcaB01g04480 Brassica carinata HOM05D012436 ORTHO05D003476 1.1e-06 58.5 198 29.3
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 1.1e-06 58.5 71 39.4
SMO165G0083 Selaginella moellendorffii HOM05D008307 ORTHO05D010374 1.1e-06 58.5 106 35.8
TWI38G2135 Tripterygium wilfordii HOM05D006793 ORTHO05D003476 1.1e-06 58.5 77 37.7
Glyma.10G199900 Glycine max HOM05D006793 ORTHO05D003476 1.4e-06 58.2 69 42.0
PSO782G0732 Papaver somniferum HOM05D045975 ORTHO05D003476 1.4e-06 58.2 132 25.8
TPR.G37771 Trifolium pratense HOM05D006793 ORTHO05D003476 1.4e-06 58.2 71 40.8
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 1.8e-06 57.8 256 24.6
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 1.8e-06 57.8 78 38.5
Nitab4.5_0000593g0350 Nicotiana tabacum HOM05D006793 ORTHO05D003476 1.8e-06 57.8 71 38.0
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 1.8e-06 57.8 53 45.3
Solyc11g007850.2 Solanum lycopersicum HOM05D006793 ORTHO05D003476 1.8e-06 57.8 71 36.6
Sopen11g003710 Solanum pennellii HOM05D006793 ORTHO05D003476 1.8e-06 57.8 71 36.6
PGSC0003DMG400027329 Solanum tuberosum HOM05D006793 ORTHO05D003476 1.8e-06 57.8 71 36.6
AUR62033080 Chenopodium quinoa HOM05D008057 ORTHO05D003476 2.4e-06 57.4 263 24.0
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 2.4e-06 57.4 77 35.1
Glyma.20G190600 Glycine max HOM05D006793 ORTHO05D003476 2.4e-06 57.4 69 40.6
Potri.008G029500 Populus trichocarpa HOM05D006793 ORTHO05D003476 2.4e-06 57.4 77 37.7
AUR62042766 Chenopodium quinoa HOM05D008057 ORTHO05D003476 3.1e-06 57.0 310 24.2
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 3.1e-06 57.0 69 39.1
VMungo0720G1705 Vigna mungo HOM05D006793 ORTHO05D003476 3.1e-06 57.0 69 39.1
Lsat_1_v5_gn_2_103100 Lactuca sativa HOM05D006793 ORTHO05D003476 4.1e-06 56.6 69 39.1
Psat6g139960 Pisum sativum HOM05D003187 ORTHO05D003630 4.1e-06 56.6 90 44.4
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 5.3e-06 56.2 77 39.0
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 5.3e-06 56.2 55 45.5
QL08p052921 Quercus lobata HOM05D006793 ORTHO05D003476 5.3e-06 56.2 69 37.7
Thecc.10G147400 Theobroma cacao HOM05D008057 ORTHO05D003476 5.3e-06 56.2 177 32.2
Aa31LG10G7260 Aethionema arabicum HOM05D000145 ORTHO05D003476 6.9e-06 55.8 55 40.0
Rhsim03G0110800 Rhododendron simsii HOM05D006793 ORTHO05D003476 6.9e-06 55.8 77 35.1
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 9.1e-06 55.5 54 44.4
RcHm_v2.0_Chr1g0336511 Rosa chinensis HOM05D006793 ORTHO05D003476 9.1e-06 55.5 77 35.1


User provided reference genes

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