Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1562 Punica granatum HOM05D006622 ORTHO05D007939 3.8e-154 548.1 277 100.0
Eucgr.F04350 Eucalyptus grandis HOM05D006622 ORTHO05D007939 3.0e-122 442.2 278 77.3
Ciclev10001495m.g Citrus clementina HOM05D006622 ORTHO05D007939 2.6e-118 429.1 277 76.5
CSS0023480 Camellia sinensis var. sinensis HOM05D006622 ORTHO05D007939 6.4e-117 424.5 271 77.1
CSS0048522 Camellia sinensis var. sinensis HOM05D006622 ORTHO05D007939 6.4e-117 424.5 271 77.1
Dinv27309 Davidia involucrata HOM05D006622 ORTHO05D007939 7.0e-116 421.0 274 76.6
RhsimUnG0092500 Rhododendron simsii HOM05D006622 ORTHO05D007939 3.5e-115 418.7 276 75.0
vmacro00835 Vaccinium macrocarpon HOM05D006622 ORTHO05D007939 6.0e-115 417.9 276 75.7
TAR628G0332 Trochodendron aralioides HOM05D006622 ORTHO05D007939 7.8e-115 417.5 277 76.9
Cfa016021 Carpinus fangiana HOM05D006622 ORTHO05D007939 3.0e-114 415.6 268 77.6
MD15G1347700 Malus domestica HOM05D006622 ORTHO05D007939 3.9e-114 415.2 265 76.2
CiPaw.06G031300 Carya illinoinensis HOM05D006622 ORTHO05D007939 1.5e-113 413.3 275 72.7
Atru.chr13.1464 Acer truncatum HOM05D006622 ORTHO05D007939 9.5e-113 410.6 270 75.6
THA.LOC104800197 Tarenaya hassleriana HOM05D006622 ORTHO05D007939 1.6e-112 409.8 275 72.0
Sabra05G0134700 Salix brachista HOM05D006622 ORTHO05D007939 2.1e-112 409.5 277 75.1
Potri.002G083300 Populus trichocarpa HOM05D006622 ORTHO05D007939 2.8e-112 409.1 273 75.1
Prupe.1G495500 Prunus persica HOM05D006622 ORTHO05D007939 3.6e-112 408.7 265 76.2
Thecc.08G125800 Theobroma cacao HOM05D006622 ORTHO05D007939 3.6e-112 408.7 267 74.5
Actinidia29467 Actinidia chinensis HOM05D006622 ORTHO05D007939 2.3e-111 406.0 273 74.4
Manes.18G077500 Manihot esculenta HOM05D006622 ORTHO05D007939 6.8e-111 404.4 277 74.7
Potri.005G178200 Populus trichocarpa HOM05D006622 ORTHO05D007939 8.9e-111 404.1 278 74.1
RcHm_v2.0_Chr6g0295871 Rosa chinensis HOM05D006622 ORTHO05D007939 3.4e-110 402.1 264 76.5
Atru.chr13.1486 Acer truncatum HOM05D006622 ORTHO05D007939 1.3e-109 400.2 260 76.2
Duzib093G0047 Durio zibethinus HOM05D006622 ORTHO05D007939 1.7e-109 399.8 263 73.4
C05p20800 Brassica napus HOM05D006622 ORTHO05D007939 2.2e-109 399.4 281 72.2
QL09p034510 Quercus lobata HOM05D006622 ORTHO05D007939 2.2e-109 399.4 267 73.4
Aqoxy5G02345 Aquilegia oxysepala HOM05D006622 ORTHO05D007939 2.9e-109 399.1 267 73.8
TWI60G0608 Tripterygium wilfordii HOM05D006622 ORTHO05D007939 4.9e-109 398.3 276 75.0
FAN15G0029 Fragaria x ananassa HOM05D006622 ORTHO05D007939 1.1e-108 397.1 268 74.3
Aa31LG7G5770 Aethionema arabicum HOM05D006622 ORTHO05D007939 1.4e-108 396.7 279 71.7
Thhalv10008385m.g Eutrema salsugineum HOM05D006622 ORTHO05D007939 1.4e-108 396.7 273 72.2
Oeu040412.1 Olea europaea HOM05D006622 ORTHO05D007939 1.9e-108 396.4 265 72.1
FvH4_2g26990 Fragaria vesca HOM05D006622 ORTHO05D007939 5.4e-108 394.8 268 74.3
FAN24G2914 Fragaria x ananassa HOM05D006622 ORTHO05D007939 5.4e-108 394.8 268 74.3
BolC5t30779H Brassica oleracea HOM05D006622 ORTHO05D007939 9.2e-108 394.0 282 71.6
BcaC05g26102 Brassica carinata HOM05D006622 ORTHO05D007939 3.5e-107 392.1 282 71.3
A06p17900 Brassica napus HOM05D006622 ORTHO05D007939 3.5e-107 392.1 281 71.5
BraA06t24880Z Brassica rapa HOM05D006622 ORTHO05D007939 3.5e-107 392.1 281 71.5
CARHR022170 Cardamine hirsuta HOM05D006622 ORTHO05D007939 1.0e-106 390.6 275 71.6
TPR.G21062 Trifolium pratense HOM05D006622 ORTHO05D007939 1.0e-106 390.6 274 69.7
BcaB07g32178 Brassica carinata HOM05D006622 ORTHO05D007939 3.9e-106 388.7 267 71.5
Ca_16559_v3 Cicer arietinum L. HOM05D006622 ORTHO05D007939 6.6e-106 387.9 276 68.8
Carub.0001s2125 Capsella rubella HOM05D006622 ORTHO05D007939 8.6e-106 387.5 264 72.3
AL1G34990 Arabidopsis lyrata HOM05D006622 ORTHO05D007939 1.1e-105 387.1 260 73.8
COL.COLO4_20860 Corchorus olitorius HOM05D006622 ORTHO05D007939 1.5e-105 386.7 295 68.1
Lj1g0017707 Lotus japonicus HOM05D006622 ORTHO05D007939 1.5e-105 386.7 272 69.5
AT1G21790 Arabidopsis thaliana HOM05D006622 ORTHO05D007939 1.9e-105 386.3 260 73.5
MSTRG.24172 Avicennia marina HOM05D006622 ORTHO05D007939 1.9e-105 386.3 266 72.9
Gohir.D05G270800 Gossypium hirsutum HOM05D006622 ORTHO05D007939 2.8e-104 382.5 266 69.5
Haze_00437 Corylus avellana HOM05D006622 ORTHO05D007939 3.6e-104 382.1 337 60.8
EL10Ac1g01019 Beta vulgaris HOM05D006622 ORTHO05D007939 4.7e-104 381.7 269 66.2
Gorai.009G283400 Gossypium raimondii HOM05D006622 ORTHO05D007939 4.7e-104 381.7 266 69.5
Glyma.06G113400 Glycine max HOM05D006622 ORTHO05D007939 6.2e-104 381.3 267 71.5
Gohir.A05G268900 Gossypium hirsutum HOM05D006622 ORTHO05D007939 8.1e-104 380.9 266 69.2
DCAR_003552 Daucus carota HOM05D006622 ORTHO05D007939 1.1e-103 380.6 261 71.6
Hund26807 Selenicereus undatus HOM05D006622 ORTHO05D007939 1.8e-103 379.8 277 67.1
MELO3C010612.2 Cucumis melo HOM05D006622 ORTHO05D007939 3.1e-103 379.0 267 70.4
Medtr3g088060 Medicago truncatula HOM05D006622 ORTHO05D007939 4.0e-103 378.6 278 66.9
SGA_v2.0_scaffold24G10458 Striga asiatica HOM05D006622 ORTHO05D007939 5.2e-103 378.3 274 71.5
HanXRQChr09g0260611 Helianthus annuus HOM05D006622 ORTHO05D007939 6.8e-103 377.9 261 72.8
CsaV3_6G034460 Cucumis sativus L. HOM05D006622 ORTHO05D007939 8.9e-103 377.5 267 70.8
Migut.N03281 Erythranthe guttata HOM05D006622 ORTHO05D007939 1.7e-101 373.2 268 69.8
Lalb_Chr11g0065931 Lupinus albus HOM05D006622 ORTHO05D007939 4.9e-101 371.7 274 67.2
Glyma.04G249500 Glycine max HOM05D006622 ORTHO05D007939 2.4e-100 369.4 268 67.9
VMungo1309G2133 Vigna mungo HOM05D006622 ORTHO05D007939 2.4e-100 369.4 267 69.3
GSVIVG01008863001 Vitis vinifera HOM05D006622 ORTHO05D007939 3.2e-100 369.0 246 72.4
Phvul.009G125300 Phaseolus vulgaris HOM05D006622 ORTHO05D007939 5.4e-100 368.2 267 69.3
Cc10_g11940 Coffea canephora HOM05D006622 ORTHO05D007939 9.2e-100 367.5 267 70.4
arahy.Tifrunner.gnm1.ann1.29UIE3 Arachis hypogaea HOM05D006622 ORTHO05D007939 3.5e-99 365.5 270 68.1
arahy.Tifrunner.gnm1.ann1.9BP3HC Arachis hypogaea HOM05D006622 ORTHO05D007939 4.6e-99 365.2 271 67.9
CAN.G69.14 Capsicum annuum HOM05D006622 ORTHO05D007939 4.6e-99 365.2 268 68.7
Lsat_1_v5_gn_4_135580 Lactuca sativa HOM05D006622 ORTHO05D007939 6.0e-99 364.8 253 73.1
PGSC0003DMG400044436 Solanum tuberosum HOM05D006622 ORTHO05D007939 7.8e-99 364.4 269 70.3
PGSC0003DMG402008996 Solanum tuberosum HOM05D006622 ORTHO05D007939 7.8e-99 364.4 269 70.3
PSO017G0487 Papaver somniferum HOM05D006622 ORTHO05D007939 3.0e-98 362.5 278 66.9
Zm00001eb146520 Zea mays HOM05D006622 ORTHO05D007939 5.1e-98 361.7 271 66.8
PSO478G0228 Papaver somniferum HOM05D006622 ORTHO05D007939 8.6e-98 360.9 261 70.9
Zm00001eb366620 Zea mays HOM05D006622 ORTHO05D007939 1.1e-97 360.5 262 67.9
ATR0584G160 Amborella trichopoda HOM05D006622 ORTHO05D007939 1.9e-97 359.8 255 69.4
HPP92_013761 Vanilla planifolia HOM05D006622 ORTHO05D007939 4.3e-97 358.6 254 67.7
Solyc01g079770.2 Solanum lycopersicum HOM05D006622 ORTHO05D007939 1.2e-96 357.1 269 68.4
CANSAT35G1811 Cannabis sativa HOM05D006622 ORTHO05D007939 1.4e-95 353.6 285 67.0
ECA232G1829 Erigeron canadensis HOM05D006622 ORTHO05D007939 1.4e-95 353.6 265 68.7
Sopen01g031530 Solanum pennellii HOM05D006622 ORTHO05D007939 1.8e-95 353.2 269 68.0
CANSAT35G0359 Cannabis sativa HOM05D006622 ORTHO05D007939 6.8e-95 351.3 285 67.4
Os01g0869600 Oryza sativa ssp. japonica HOM05D006622 ORTHO05D007939 1.7e-93 346.7 256 68.0
Sc15g0002770 Simmondsia chinensis HOM05D006622 ORTHO05D007939 1.7e-93 346.7 272 62.5
Nitab4.5_0000630g0130 Nicotiana tabacum HOM05D006622 ORTHO05D007939 2.9e-93 345.9 269 66.2
AUR62014332 Chenopodium quinoa HOM05D006622 ORTHO05D007939 3.8e-85 318.9 270 59.3
AUR62019075 Chenopodium quinoa HOM05D006622 ORTHO05D007939 2.6e-78 296.2 195 71.8
Sed0026599 Sechium edule HOM05D006622 ORTHO05D007939 2.1e-75 286.6 179 78.2
MD08G1162300 Malus domestica HOM05D006622 ORTHO05D007939 8.4e-69 264.6 175 73.1
FAN20G1317 Fragaria x ananassa HOM05D006622 ORTHO05D007939 1.1e-68 264.2 179 74.9
Oeu040413.1 Olea europaea HOM05D006622 ORTHO05D007939 2.5e-68 263.1 173 73.4
Cpa.g.sc64.93 Carica papaya HOM05D006622 ORTHO05D007939 1.3e-66 257.3 176 71.6
ClCG08G005670 Citrullus lanatus HOM05D006622 ORTHO05D007939 9.6e-65 251.1 167 72.5
Mapoly0055s0084 Marchantia polymorpha HOM05D006622 ORTHO05D007939 1.1e-63 247.7 270 48.5
Peaxi162Scf01270g00111 Petunia axillaris HOM05D006622 ORTHO05D007939 1.1e-63 247.7 266 50.4
SMO351G0129 Selaginella moellendorffii HOM05D006622 ORTHO05D007939 5.0e-61 238.8 273 48.4
CDE08G0135 Ceratophyllum demersum HOM05D006622 ORTHO05D007939 1.2e-59 234.2 265 52.5
CDE06G0548 Ceratophyllum demersum HOM05D006622 ORTHO05D007939 5.7e-57 225.3 153 73.2
Sp1g19350 Schrenkiella parvula HOM05D006622 ORTHO05D007939 7.4e-57 224.9 137 76.6
Psat5g087320 Pisum sativum HOM05D006622 ORTHO05D007939 3.7e-56 222.6 172 64.0
Pp3c12_11900 Physcomitrium patens HOM05D006622 ORTHO05D007939 8.8e-50 201.4 270 45.9
AagrBONN_evm.TU.Sc2ySwM_117.1000 Anthoceros agrestis HOM05D006622 ORTHO05D007939 9.7e-49 198.0 216 49.5
Nn5g28301 Nelumbo nucifera HOM05D006622 ORTHO05D007939 2.8e-48 196.4 266 45.9
Nitab4.5_0000968g0040 Nicotiana tabacum HOM05D006622 ORTHO05D007939 2.2e-45 186.8 272 42.6
PGSC0003DMG400007898 Solanum tuberosum HOM05D006622 ORTHO05D007939 4.2e-36 156.0 130 61.5
Actinidia03468 Actinidia chinensis HOM05D006622 ORTHO05D007939 3.2e-28 129.8 273 34.8
Aa31LG4G7650 Aethionema arabicum HOM05D006622 ORTHO05D007939 4.7e-27 125.9 78 76.9
Lj7C341T13 Lonicera japonica HOM05D006622 ORTHO05D007939 4.0e-26 122.9 86 66.3
CBR_g40088 Chara braunii HOM05D006622 ORTHO05D007939 3.7e-24 116.3 150 44.7
Lj7C341T14 Lonicera japonica HOM05D006622 ORTHO05D007939 3.2e-20 103.2 81 63.0
AagrBONN_evm.TU.Sc2ySwM_117.972 Anthoceros agrestis HOM05D006622 ORTHO05D007939 2.1e-19 100.5 192 38.5
Prupe.1G512700 Prunus persica HOM05D006622 ORTHO05D007939 6.8e-18 95.5 72 66.7
Aa31LG4G7660 Aethionema arabicum HOM05D006622 ORTHO05D007939 5.7e-17 92.4 65 64.6
HPP92_013753 Vanilla planifolia HOM05D006622 ORTHO05D007939 8.3e-16 88.6 64 67.2
AagrBONN_evm.TU.Sc2ySwM_117.993 Anthoceros agrestis HOM05D006622 ORTHO05D007939 1.0e-13 81.6 130 39.2
unitig_748.g7104 Utricularia gibba HOM05D006622 ORTHO05D007939 1.9e-12 77.4 71 54.9


User provided reference genes

Program Settings