Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1461 Punica granatum HOM05D005743 ORTHO05D007031 0.0e+00 1176.0 606 100.0
Dinv19686 Davidia involucrata HOM05D005743 ORTHO05D007031 6.0e-237 824.3 601 72.9
Cfa005908 Carpinus fangiana HOM05D005743 ORTHO05D007031 1.5e-235 819.7 602 73.4
TAR362G0334 Trochodendron aralioides HOM05D005743 ORTHO05D007031 9.0e-233 810.4 601 71.9
Atru.chr5.1142 Acer truncatum HOM05D005743 ORTHO05D007031 5.0e-231 804.7 602 71.4
COL.COLO4_23341 Corchorus olitorius HOM05D005743 ORTHO05D007031 1.4e-230 803.1 589 71.8
Ciclev10019600m.g Citrus clementina HOM05D005743 ORTHO05D007031 3.0e-228 795.4 604 69.9
Potri.014G128600 Populus trichocarpa HOM05D005743 ORTHO05D007031 3.3e-227 792.0 602 68.8
Aqoxy2G02938 Aquilegia oxysepala HOM05D005743 ORTHO05D007031 1.6e-226 789.6 592 70.1
Thecc.01G301000 Theobroma cacao HOM05D005743 ORTHO05D007031 2.2e-226 789.3 589 72.2
Hma1.2p1_0491F.1_g164590 Hydrangea macrophylla HOM05D005743 ORTHO05D007031 2.8e-226 788.9 587 71.6
Sopen06g003890 Solanum pennellii HOM05D005743 ORTHO05D007031 1.1e-225 786.9 588 71.3
MBI18_g06031_MAGBIO Magnolia biondii HOM05D005743 ORTHO05D007031 1.4e-225 786.6 601 69.6
Solyc06g009130.3 Solanum lycopersicum HOM05D005743 ORTHO05D007031 2.4e-225 785.8 588 71.3
TWI59G0198 Tripterygium wilfordii HOM05D005743 ORTHO05D007031 3.1e-225 785.4 602 68.9
CSS0024650 Camellia sinensis var. sinensis HOM05D005743 ORTHO05D007031 2.6e-224 782.3 601 70.2
Nitab4.5_0005805g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.7e-223 779.6 588 70.2
Lj2A1195G24 Lonicera japonica HOM05D005743 ORTHO05D007031 2.2e-223 779.2 588 69.6
PSO170G2277 Papaver somniferum HOM05D005743 ORTHO05D007031 5.0e-223 778.1 603 68.7
Gorai.007G127900 Gossypium raimondii HOM05D005743 ORTHO05D007031 1.4e-222 776.5 589 70.3
CANSAT25G1370 Cannabis sativa HOM05D005743 ORTHO05D007031 5.5e-222 774.6 595 69.1
PSO407G0387 Papaver somniferum HOM05D005743 ORTHO05D007031 9.4e-222 773.9 603 68.2
Rhsim01G0285500 Rhododendron simsii HOM05D005743 ORTHO05D007031 1.2e-221 773.5 587 70.2
QL12p028420 Quercus lobata HOM05D005743 ORTHO05D007031 1.6e-221 773.1 600 69.3
Oeu046676.1 Olea europaea HOM05D005743 ORTHO05D007031 2.7e-221 772.3 588 70.2
Sed0000130 Sechium edule HOM05D005743 ORTHO05D007031 1.4e-220 770.0 603 68.8
Manes.01G219600 Manihot esculenta HOM05D005743 ORTHO05D007031 1.8e-220 769.6 591 67.9
Prupe.8G261900 Prunus persica HOM05D005743 ORTHO05D007031 2.3e-220 769.2 589 68.1
Duzib138G1616 Durio zibethinus HOM05D005743 ORTHO05D007031 3.9e-220 768.5 588 70.1
CAN.G1989.8 Capsicum annuum HOM05D005743 ORTHO05D007031 8.8e-220 767.3 588 69.9
Glyma.10G018000 Glycine max HOM05D005743 ORTHO05D007031 1.5e-219 766.5 587 68.7
Gohir.D11G119400 Gossypium hirsutum HOM05D005743 ORTHO05D007031 3.3e-219 765.4 588 68.9
Lj5g0015401 Lotus japonicus HOM05D005743 ORTHO05D007031 4.3e-219 765.0 591 68.4
Nitab4.5_0002470g0070 Nicotiana tabacum HOM05D005743 ORTHO05D007031 7.4e-219 764.2 589 69.3
Cc01_g20880 Coffea canephora HOM05D005743 ORTHO05D007031 1.7e-218 763.1 586 70.0
MELO3C017953.2 Cucumis melo HOM05D005743 ORTHO05D007031 4.8e-218 761.5 597 68.5
MD03G1288600 Malus domestica HOM05D005743 ORTHO05D007031 6.3e-218 761.1 589 68.8
CsaV3_4G000840 Cucumis sativus L. HOM05D005743 ORTHO05D007031 3.1e-217 758.8 597 67.5
VMungo0720G3165 Vigna mungo HOM05D005743 ORTHO05D007031 5.3e-217 758.1 587 68.0
Sc05g0003820 Simmondsia chinensis HOM05D005743 ORTHO05D007031 6.9e-217 757.7 583 69.0
Phvul.007G147000 Phaseolus vulgaris HOM05D005743 ORTHO05D007031 1.0e-215 753.8 587 68.0
arahy.Tifrunner.gnm1.ann1.39WPG8 Arachis hypogaea HOM05D005743 ORTHO05D007031 1.7e-215 753.1 590 67.5
arahy.Tifrunner.gnm1.ann1.V1RZF6 Arachis hypogaea HOM05D005743 ORTHO05D007031 1.7e-215 753.1 590 67.6
GSVIVG01028023001 Vitis vinifera HOM05D005743 ORTHO05D007031 1.7e-215 753.1 601 67.7
Eucgr.K03487 Eucalyptus grandis HOM05D005743 ORTHO05D007031 3.8e-215 751.9 591 68.4
ClCG10G010970 Citrullus lanatus HOM05D005743 ORTHO05D007031 1.9e-214 749.6 641 64.4
Sabra14G0095500 Salix brachista HOM05D005743 ORTHO05D007031 2.5e-214 749.2 621 64.6
Ca_10331_v3 Cicer arietinum L. HOM05D005743 ORTHO05D007031 7.2e-214 747.7 584 67.6
Cpa.g.sc9.258 Carica papaya HOM05D005743 ORTHO05D007031 3.6e-213 745.3 605 65.8
CAN.G1280.3 Capsicum annuum HOM05D005743 ORTHO05D007031 4.7e-213 745.0 588 68.5
Migut.D00150 Erythranthe guttata HOM05D005743 ORTHO05D007031 4.7e-213 745.0 601 67.1
Medtr1g088430 Medicago truncatula HOM05D005743 ORTHO05D007031 7.9e-213 744.2 588 67.0
RcHm_v2.0_Chr6g0294071 Rosa chinensis HOM05D005743 ORTHO05D007031 1.0e-212 743.8 591 66.8
Peaxi162Scf00399g00716 Petunia axillaris HOM05D005743 ORTHO05D007031 1.5e-211 740.0 581 67.6
THA.LOC104817489 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 2.6e-211 739.2 586 66.2
THA.LOC104827666 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 2.2e-210 736.1 586 65.5
FAN15G2676 Fragaria x ananassa HOM05D005743 ORTHO05D007031 2.8e-210 735.7 591 66.0
TPR.G33974 Trifolium pratense HOM05D005743 ORTHO05D007031 4.8e-210 734.9 588 67.0
Migut.N01507 Erythranthe guttata HOM05D005743 ORTHO05D007031 6.3e-210 734.6 586 66.2
FAN20G0637 Fragaria x ananassa HOM05D005743 ORTHO05D007031 8.2e-210 734.2 595 65.5
Migut.O00421 Erythranthe guttata HOM05D005743 ORTHO05D007031 5.3e-209 731.5 586 66.2
DCAR_005790 Daucus carota HOM05D005743 ORTHO05D007031 3.5e-208 728.8 588 66.2
SalBow3G4402 Salvia bowleyana HOM05D005743 ORTHO05D007031 1.3e-207 726.9 590 65.9
SalBow2G1764 Salvia bowleyana HOM05D005743 ORTHO05D007031 2.2e-207 726.1 604 64.2
C04p00250 Brassica napus HOM05D005743 ORTHO05D007031 9.4e-206 720.7 588 65.0
BolC4t21668H Brassica oleracea HOM05D005743 ORTHO05D007031 9.4e-206 720.7 588 65.0
BraA05t19031Z Brassica rapa HOM05D005743 ORTHO05D007031 4.7e-205 718.4 588 64.8
A05p00330 Brassica napus HOM05D005743 ORTHO05D007031 8.0e-205 717.6 588 64.6
AUR62008667 Chenopodium quinoa HOM05D005743 ORTHO05D007031 1.0e-204 717.2 587 65.4
AUR62025577 Chenopodium quinoa HOM05D005743 ORTHO05D007031 1.8e-204 716.5 587 65.8
Aa31LG1G28940 Aethionema arabicum HOM05D005743 ORTHO05D007031 5.7e-203 711.4 592 63.5
HanXRQChr13g0413001 Helianthus annuus HOM05D005743 ORTHO05D007031 7.4e-203 711.1 587 63.5
Carub.0004s3033 Capsella rubella HOM05D005743 ORTHO05D007031 9.7e-203 710.7 587 63.7
AT2G47600 Arabidopsis thaliana HOM05D005743 ORTHO05D007031 1.7e-202 709.9 589 64.0
AL4G47180 Arabidopsis lyrata HOM05D005743 ORTHO05D007031 2.8e-202 709.1 589 64.0
Sc05g0003780 Simmondsia chinensis HOM05D005743 ORTHO05D007031 1.4e-201 706.8 583 65.7
Eucgr.K03488 Eucalyptus grandis HOM05D005743 ORTHO05D007031 2.4e-201 706.1 535 70.1
Thhalv10001391m.g Eutrema salsugineum HOM05D005743 ORTHO05D007031 3.1e-201 705.7 587 63.0
EL10Ac7g17510 Beta vulgaris HOM05D005743 ORTHO05D007031 1.0e-199 700.7 601 62.9
CDE02G2026 Ceratophyllum demersum HOM05D005743 ORTHO05D007031 1.0e-199 700.7 587 63.9
Os11g0660000 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 1.7e-199 699.9 578 64.2
CARHR143000 Cardamine hirsuta HOM05D005743 ORTHO05D007031 2.2e-199 699.5 601 61.6
Lsat_1_v5_gn_5_191280 Lactuca sativa HOM05D005743 ORTHO05D007031 2.5e-198 696.0 585 63.8
Hund18172 Selenicereus undatus HOM05D005743 ORTHO05D007031 1.4e-196 690.3 603 62.5
FvH4_2g25770 Fragaria vesca HOM05D005743 ORTHO05D007031 1.8e-196 689.9 549 67.2
HPP92_016082 Vanilla planifolia HOM05D005743 ORTHO05D007031 6.8e-196 688.0 580 63.8
Actinidia24820 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.5e-195 686.8 546 68.5
SGA_v2.0_scaffold198G41143 Striga asiatica HOM05D005743 ORTHO05D007031 1.3e-194 683.7 609 61.7
ECA248G2514 Erigeron canadensis HOM05D005743 ORTHO05D007031 4.8e-194 681.8 553 65.5
FAN24G1083 Fragaria x ananassa HOM05D005743 ORTHO05D007031 1.0e-191 674.1 546 65.9
Ah.08g213420 Amaranthus hybridus HOM05D005743 ORTHO05D007031 1.5e-190 670.2 600 60.2
Haze_04942 Corylus avellana HOM05D005743 ORTHO05D007031 4.4e-187 658.7 651 61.0
BcaB02g08759 Brassica carinata HOM05D005743 ORTHO05D007031 3.0e-180 636.0 587 58.9
RcHm_v2.0_Chr6g0294081 Rosa chinensis HOM05D005743 ORTHO05D007031 3.0e-180 636.0 592 59.1
Lalb_Chr06g0166491 Lupinus albus HOM05D005743 ORTHO05D007031 2.1e-173 613.2 612 57.2
Nn4g25787 Nelumbo nucifera HOM05D005743 ORTHO05D007031 3.4e-171 605.9 469 69.7
SGA_v2.0_scaffold1G00362 Striga asiatica HOM05D005743 ORTHO05D007031 3.0e-167 592.8 572 57.7
Psat6g165240 Pisum sativum HOM05D005743 ORTHO05D007031 1.4e-156 557.4 469 63.5
FAN27G1322 Fragaria x ananassa HOM05D005743 ORTHO05D007031 8.9e-156 554.7 466 63.9
Nitab4.5_0001879g0130 Nicotiana tabacum HOM05D005743 ORTHO05D007031 8.1e-125 451.8 605 46.8
vmacro15016 Vaccinium macrocarpon HOM05D005743 ORTHO05D007031 2.5e-121 440.3 413 60.8
Peaxi162Scf00001g04234 Petunia axillaris HOM05D005743 ORTHO05D007031 1.3e-119 434.5 598 46.5
Gohir.A11G114301 Gossypium hirsutum HOM05D005743 ORTHO05D007031 1.8e-111 407.5 292 72.9
AagrBONN_evm.TU.Sc2ySwM_344.5359 Anthoceros agrestis HOM05D005743 ORTHO05D007031 3.1e-108 396.7 585 41.2
Pp3c1_39250 Physcomitrium patens HOM05D005743 ORTHO05D007031 4.1e-108 396.4 578 41.9
Mapoly0134s0038 Marchantia polymorpha HOM05D005743 ORTHO05D007031 6.9e-108 395.6 582 41.9
ATR0706G014 Amborella trichopoda HOM05D005743 ORTHO05D007031 2.9e-106 390.2 263 74.5
Hund18173 Selenicereus undatus HOM05D005743 ORTHO05D007031 4.2e-105 386.3 266 73.7
Pp3c2_6060 Physcomitrium patens HOM05D005743 ORTHO05D007031 1.2e-104 384.8 581 41.3
CiPaw.08G094900 Carya illinoinensis HOM05D005743 ORTHO05D007031 8.8e-103 378.6 350 58.9
Zm00001eb165450 Zea mays HOM05D005743 ORTHO05D007031 4.7e-96 356.3 307 61.6
AagrBONN_evm.TU.Sc2ySwM_368.1084 Anthoceros agrestis HOM05D005743 ORTHO05D007031 1.7e-90 337.8 599 36.4
SMO351G0556 Selaginella moellendorffii HOM05D005743 ORTHO05D007031 3.2e-81 307.0 485 40.0
THA.LOC104798829 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 2.4e-76 290.8 176 79.5
Actinidia26720 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.2e-70 271.9 374 46.8
CBR_g22437 Chara braunii HOM05D005743 ORTHO05D007031 1.3e-69 268.5 627 32.1
Os02g0644900 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 1.6e-56 224.9 283 49.1
Nitab4.5_0002433g0030 Nicotiana tabacum HOM05D005743 ORTHO05D007031 8.0e-56 222.6 278 50.4
PRCOL_00004461 Prasinoderma coloniale HOM05D005743 ORTHO05D007031 9.8e-54 215.7 701 27.8
SEGI_24798 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 3.2e-52 210.7 162 68.5
EL10Ac3g06395 Beta vulgaris HOM05D005743 ORTHO05D007031 4.1e-52 210.3 152 71.7
Actinidia21045 Actinidia chinensis HOM05D005743 ORTHO05D007031 5.6e-49 199.9 99 96.0
Zm00001eb407450 Zea mays HOM05D005743 ORTHO05D007031 5.2e-47 193.4 174 57.5
Rhsim05G0173900 Rhododendron simsii HOM05D005743 ORTHO05D007031 1.8e-39 168.3 118 72.0
SEGI_13510 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 4.4e-38 163.7 115 72.2
Actinidia21044 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.5e-33 148.7 180 48.9
Nitab4.5_0002433g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 9.9e-30 136.0 97 69.1
Cre11.g479600 Chlamydomonas reinhardtii HOM05D005743 ORTHO05D007031 1.2e-27 129.0 795 23.4
Glyma.02G017550 Glycine max HOM05D005743 ORTHO05D007031 1.1e-25 122.5 77 81.8
SEGI_31813 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 4.5e-22 110.5 96 56.2
SEGI_40223 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 3.5e-19 100.9 100 53.0
ATR0706G260 Amborella trichopoda HOM05D005743 ORTHO05D007031 1.4e-15 89.0 51 86.3
PRCOL_00000753 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 4.3e-09 67.4 161 30.4
Medtr7g112660 Medicago truncatula HOM05D005743 ORTHO05D007031 1.1e-07 62.8 40 77.5
PRCOL_00002407 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 2.6e-06 58.2 170 31.2


User provided reference genes

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