Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 5.4e-308 1060.1 504 100.0
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 2.4e-231 805.4 501 74.1
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 7.0e-231 803.9 462 78.8
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 3.0e-229 798.5 468 78.4
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 3.3e-228 795.0 501 74.5
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 5.6e-228 794.3 504 73.0
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 1.6e-227 792.7 501 73.5
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 1.0e-226 790.0 485 75.3
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 1.4e-226 789.6 478 76.8
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 8.9e-226 786.9 504 73.8
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 7.5e-225 783.9 464 76.1
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 1.3e-224 783.1 435 78.6
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 1.3e-224 783.1 476 74.6
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 1.3e-224 783.1 507 73.6
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 1.7e-224 782.7 468 75.4
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 2.9e-224 781.9 430 80.7
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 1.4e-223 779.6 472 75.4
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 1.6e-222 776.2 488 73.8
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 2.0e-222 775.8 472 75.0
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 2.7e-222 775.4 510 71.0
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 2.7e-222 775.4 472 75.0
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 3.5e-222 775.0 443 77.9
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 7.8e-222 773.9 519 70.5
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 1.7e-221 772.7 490 72.9
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 1.7e-221 772.7 490 72.9
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 3.9e-221 771.5 471 75.4
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 5.0e-221 771.2 467 75.4
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 6.6e-221 770.8 466 74.7
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 8.6e-221 770.4 489 73.0
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 1.5e-220 769.6 467 75.4
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 1.9e-220 769.2 475 74.1
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 4.3e-220 768.1 487 72.5
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 5.6e-220 767.7 467 74.9
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 3.6e-219 765.0 467 75.6
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 1.1e-218 763.5 463 73.9
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 1.8e-218 762.7 427 78.9
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 2.3e-218 762.3 425 79.1
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 3.1e-218 761.9 471 74.9
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 8.9e-218 760.4 423 79.2
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 8.9e-218 760.4 458 75.5
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 1.5e-217 759.6 434 77.6
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 5.8e-217 757.7 504 70.8
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 1.3e-216 756.5 509 69.5
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 1.3e-216 756.5 466 74.0
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 4.9e-216 754.6 435 76.8
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 1.6e-214 749.6 466 73.2
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 3.5e-214 748.4 472 71.8
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 7.8e-214 747.3 536 67.2
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 7.8e-214 747.3 466 74.7
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 1.0e-213 746.9 427 77.3
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 1.3e-213 746.5 473 73.4
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 1.3e-213 746.5 467 73.4
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 2.3e-213 745.7 472 72.0
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 1.5e-212 743.0 427 76.3
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 5.6e-212 741.1 440 75.7
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 7.3e-212 740.7 531 67.0
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 9.5e-212 740.3 487 70.6
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 1.2e-211 740.0 469 72.1
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 2.8e-211 738.8 463 72.1
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 4.7e-211 738.0 466 71.7
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 1.1e-210 736.9 466 71.9
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 1.4e-210 736.5 492 70.7
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 1.8e-210 736.1 474 72.2
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 1.8e-210 736.1 474 71.9
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 2.3e-210 735.7 466 73.4
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 2.3e-210 735.7 464 70.7
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 4.0e-210 734.9 466 71.7
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 4.0e-210 734.9 488 69.3
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 4.4e-209 731.5 475 72.0
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 4.4e-209 731.5 475 72.0
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 4.4e-209 731.5 463 72.8
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 1.7e-208 729.6 463 72.6
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 4.9e-208 728.0 467 71.5
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 6.4e-208 727.6 467 71.5
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 8.4e-208 727.2 473 70.4
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 2.4e-207 725.7 467 71.3
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 3.2e-207 725.3 467 70.9
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 5.4e-207 724.5 474 72.2
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 7.1e-207 724.2 472 70.3
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 7.1e-207 724.2 460 70.7
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 1.6e-206 723.0 463 70.8
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 6.0e-206 721.1 483 69.8
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 1.0e-205 720.3 483 69.6
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 6.6e-205 717.6 439 72.4
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 4.0e-202 708.4 477 70.9
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 1.3e-200 703.4 425 74.4
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 2.2e-200 702.6 463 69.8
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 5.4e-199 698.0 472 67.2
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 5.1e-197 691.4 487 63.7
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 2.5e-196 689.1 431 70.3
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 8.4e-192 674.1 549 59.2
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 1.6e-190 669.8 380 77.4
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 1.6e-190 669.8 380 77.4
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 2.7e-190 669.1 501 63.1
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 6.0e-190 667.9 414 73.2
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 1.3e-189 666.8 456 68.6
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 1.5e-188 663.3 378 77.2
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 7.4e-188 661.0 467 62.7
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 2.0e-185 652.9 472 66.5
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 2.4e-183 646.0 463 67.8
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 4.6e-182 641.7 380 75.8
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 7.9e-182 641.0 398 72.4
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 1.9e-180 636.3 427 68.9
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 3.1e-178 629.0 421 71.5
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 2.1e-174 616.3 370 75.4
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 2.3e-173 612.8 433 65.4
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 8.7e-173 610.9 325 82.2
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 3.3e-172 609.0 417 65.2
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 4.3e-172 608.6 434 66.6
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 5.9e-169 598.2 518 57.7
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 1.0e-168 597.4 426 63.4
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 5.5e-167 591.7 408 67.9
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 2.1e-166 589.7 469 59.5
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 1.1e-151 540.8 479 57.8
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 3.2e-151 539.3 321 73.8
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 6.1e-150 535.0 396 60.1
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 7.9e-150 534.6 447 55.3
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 1.6e-137 493.8 427 56.2
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 1.7e-131 473.8 269 74.7
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.2e-121 441.0 255 77.6
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 1.7e-104 384.0 455 42.2
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 2.1e-102 377.1 218 73.4
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 3.8e-83 313.2 184 75.0
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 2.4e-74 283.9 162 77.2
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 1.8e-72 277.7 426 39.2
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 6.7e-64 249.2 148 72.3
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.5e-63 248.1 368 38.6
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 5.5e-58 229.6 188 62.8
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 1.3e-56 224.9 110 86.4
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 1.8e-56 224.6 176 65.3
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 1.5e-52 211.5 118 78.8
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 7.6e-52 209.1 148 60.1
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 3.7e-46 190.3 112 75.9
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 2.6e-39 167.5 185 47.0
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 3.1e-37 160.6 106 67.9
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 6.1e-33 146.4 186 44.1
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 1.7e-19 101.7 60 70.0
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 2.1e-17 94.7 61 65.6
BcaC09g52073 Brassica carinata HOM05D002602 ORTHO05D002661 1.5e-07 62.0 41 63.4
CDE02G1858 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 4.9e-06 57.0 106 35.8
TPR.G33960 Trifolium pratense HOM05D005302 ORTHO05D006422 4.9e-06 57.0 43 60.5


User provided reference genes

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