Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1316 Punica granatum HOM05D000097 ORTHO05D000041 3.8e-122 441.4 208 100.0
PGR044G1153 Punica granatum HOM05D000097 ORTHO05D000041 1.7e-26 123.6 71 87.3
PGR042G1748 Punica granatum HOM05D000097 ORTHO05D000041 1.0e-18 97.8 70 70.0
PGR044G1072 Punica granatum HOM05D000097 ORTHO05D000041 2.5e-17 93.2 71 69.0
PGR042G0384 Punica granatum HOM05D000097 ORTHO05D000041 1.3e-16 90.9 70 67.1
PGR044G0430 Punica granatum HOM05D000097 ORTHO05D000041 1.2e-14 84.3 69 65.2
Prupe.7G199500 Prunus persica HOM05D000097 ORTHO05D000041 7.1e-12 75.1 83 47.0
TWI63G0469 Tripterygium wilfordii HOM05D000097 ORTHO05D000041 2.7e-11 73.2 72 52.8
PGR044G1025 Punica granatum HOM05D000097 ORTHO05D000041 4.6e-11 72.4 66 50.0
PGR044G1525 Punica granatum HOM05D000097 ORTHO05D000041 6.0e-11 72.0 87 44.8
PGR044G0355 Punica granatum HOM05D000097 ORTHO05D000041 7.9e-11 71.6 55 56.4
MD15G1217000 Malus domestica HOM05D000097 ORTHO05D000041 3.3e-09 66.2 88 45.5
TWI63G1525 Tripterygium wilfordii HOM05D000097 ORTHO05D000041 5.6e-09 65.5 46 63.0
PGR044G2365 Punica granatum HOM05D000097 ORTHO05D000041 7.4e-09 65.1 66 42.4
MD02G1090400 Malus domestica HOM05D000097 ORTHO05D000041 1.6e-08 63.9 83 43.4
SGA_v2.0_scaffold91G28110 Striga asiatica HOM05D000097 ORTHO05D000041 3.7e-08 62.8 57 52.6
MSTRG.16356 Avicennia marina HOM05D000097 ORTHO05D000041 4.8e-08 62.4 52 53.8
Migut.J00929 Erythranthe guttata HOM05D000097 ORTHO05D000041 8.1e-08 61.6 57 56.1
PSO135G0142 Papaver somniferum HOM05D000097 ORTHO05D000041 8.1e-08 61.6 66 51.5
Eucgr.E04257 Eucalyptus grandis HOM05D000097 ORTHO05D000041 1.1e-07 61.2 68 47.1
Nitab4.5_0005356g0040 Nicotiana tabacum HOM05D000097 ORTHO05D000041 1.1e-07 61.2 47 59.6
QL07p008519 Quercus lobata HOM05D000097 ORTHO05D000041 1.1e-07 61.2 52 55.8
Lj2A347G13 Lonicera japonica HOM05D000097 ORTHO05D000041 1.4e-07 60.8 49 61.2
Lj2g0006414 Lotus japonicus HOM05D000097 ORTHO05D000041 1.4e-07 60.8 57 56.1
Nitab4.5_0000771g0070 Nicotiana tabacum HOM05D000097 ORTHO05D000041 1.4e-07 60.8 47 59.6
Sopen02g017840 Solanum pennellii HOM05D000097 ORTHO05D000041 1.4e-07 60.8 179 27.9
TWI63G1144 Tripterygium wilfordii HOM05D000097 ORTHO05D000041 1.4e-07 60.8 46 58.7
Nn1g06179 Nelumbo nucifera HOM05D000097 ORTHO05D000041 2.4e-07 60.1 46 60.9
PSO675G6301 Papaver somniferum HOM05D000097 ORTHO05D000041 2.4e-07 60.1 43 62.8
PSO724G0908 Papaver somniferum HOM05D000097 ORTHO05D000041 2.4e-07 60.1 66 50.0
FAN19G2881 Fragaria x ananassa HOM05D000097 ORTHO05D000041 3.1e-07 59.7 60 50.0
SGA_v2.0_scaffold21G09486 Striga asiatica HOM05D000097 ORTHO05D000041 3.1e-07 59.7 58 51.7
ECA236G4085 Erigeron canadensis HOM05D000097 ORTHO05D000041 4.0e-07 59.3 99 42.4
Oeu052663.1 Olea europaea HOM05D000097 ORTHO05D000041 4.0e-07 59.3 80 43.8
Lj2P348T8 Lonicera japonica HOM05D000097 ORTHO05D000041 5.3e-07 58.9 63 50.8
QL02p083208 Quercus lobata HOM05D000097 ORTHO05D000041 5.3e-07 58.9 52 53.8
TPR.G19470 Trifolium pratense HOM05D000097 ORTHO05D000041 5.3e-07 58.9 46 60.9
MSTRG.16354 Avicennia marina HOM05D000097 ORTHO05D000041 6.9e-07 58.5 48 56.2
HanXRQChr11g0353571 Helianthus annuus HOM05D000097 ORTHO05D000041 6.9e-07 58.5 43 62.8
Oeu014769.1 Olea europaea HOM05D000097 ORTHO05D000041 6.9e-07 58.5 70 45.7
PSO210G1743 Papaver somniferum HOM05D000097 ORTHO05D000041 6.9e-07 58.5 68 39.7
PSO210G2280 Papaver somniferum HOM05D000097 ORTHO05D000041 6.9e-07 58.5 68 39.7
PSO210G3329 Papaver somniferum HOM05D000097 ORTHO05D000041 6.9e-07 58.5 68 39.7
PSO210G6257 Papaver somniferum HOM05D000097 ORTHO05D000041 6.9e-07 58.5 68 39.7
PSO724G0065 Papaver somniferum HOM05D000097 ORTHO05D000041 6.9e-07 58.5 66 50.0
PSO832G1215 Papaver somniferum HOM05D000097 ORTHO05D000041 6.9e-07 58.5 81 42.0
QL02p083877 Quercus lobata HOM05D000097 ORTHO05D000041 6.9e-07 58.5 80 40.0
TAR633G0224 Trochodendron aralioides HOM05D000097 ORTHO05D000041 6.9e-07 58.5 72 44.4
Dinv03003 Davidia involucrata HOM05D000097 ORTHO05D000041 9.0e-07 58.2 46 56.5
Dinv03005 Davidia involucrata HOM05D000097 ORTHO05D000041 9.0e-07 58.2 46 56.5
Lj2A348G10 Lonicera japonica HOM05D000097 ORTHO05D000041 9.0e-07 58.2 64 48.4
Nitab4.5_0000771g0090 Nicotiana tabacum HOM05D000097 ORTHO05D000041 9.0e-07 58.2 47 57.4
Nitab4.5_0005356g0080 Nicotiana tabacum HOM05D000097 ORTHO05D000041 9.0e-07 58.2 47 57.4
Ciclev10014877m.g Citrus clementina HOM05D000097 ORTHO05D000041 1.2e-06 57.8 95 38.9
Dinv15491 Davidia involucrata HOM05D000097 ORTHO05D000041 1.2e-06 57.8 103 39.8
Dinv25556 Davidia involucrata HOM05D000097 ORTHO05D000041 1.2e-06 57.8 63 49.2
HanXRQChr14g0436531 Helianthus annuus HOM05D000097 ORTHO05D000041 1.2e-06 57.8 68 50.0
Oeu012359.1 Olea europaea HOM05D000097 ORTHO05D000041 1.2e-06 57.8 68 45.6
QL11p014929 Quercus lobata HOM05D000097 ORTHO05D000041 1.2e-06 57.8 61 50.8
TPR.G19462 Trifolium pratense HOM05D000097 ORTHO05D000041 1.2e-06 57.8 46 58.7
vmacro10275 Vaccinium macrocarpon HOM05D000097 ORTHO05D000041 1.2e-06 57.8 88 40.9
EL10Ac8g19891 Beta vulgaris HOM05D000097 ORTHO05D000041 1.5e-06 57.4 80 40.0
Cc00_g31540 Coffea canephora HOM05D000097 ORTHO05D000041 1.5e-06 57.4 42 61.9
FAN28G0340 Fragaria x ananassa HOM05D003317 ORTHO05D003696 1.5e-06 57.4 60 48.3
Rhsim05G0010200 Rhododendron simsii HOM05D000097 ORTHO05D000041 1.5e-06 57.4 51 51.0
TAR383G0826 Trochodendron aralioides HOM05D000097 ORTHO05D000041 1.5e-06 57.4 43 62.8
AUR62012650 Chenopodium quinoa HOM05D000097 ORTHO05D000041 2.0e-06 57.0 80 41.2
Cc07_g17910 Coffea canephora HOM05D000097 ORTHO05D000041 2.0e-06 57.0 72 44.4
ECA238G0855 Erigeron canadensis HOM05D000097 ORTHO05D000041 2.0e-06 57.0 89 40.4
FvH4_1g08610 Fragaria vesca HOM05D000097 ORTHO05D000041 2.0e-06 57.0 60 48.3
Nn1g06181 Nelumbo nucifera HOM05D000097 ORTHO05D000041 2.0e-06 57.0 43 62.8
TAR626G1333 Trochodendron aralioides HOM05D000097 ORTHO05D000041 2.0e-06 57.0 63 46.0
Ah.13g074070 Amaranthus hybridus HOM05D000097 ORTHO05D000041 2.6e-06 56.6 60 45.0
Ah.14g088140 Amaranthus hybridus HOM05D000097 ORTHO05D000041 2.6e-06 56.6 80 43.8
AUR62005998 Chenopodium quinoa HOM05D000097 ORTHO05D000041 2.6e-06 56.6 83 41.0
Ciclev10003303m.g Citrus clementina HOM05D000097 ORTHO05D000041 2.6e-06 56.6 69 46.4
Nn1g06182 Nelumbo nucifera HOM05D000097 ORTHO05D000041 2.6e-06 56.6 47 59.6
PSO478G2351 Papaver somniferum HOM05D000097 ORTHO05D000041 2.6e-06 56.6 69 44.9
Potri.008G023101 Populus trichocarpa HOM05D000097 ORTHO05D000041 2.6e-06 56.6 67 44.8
QL03p020913 Quercus lobata HOM05D000097 ORTHO05D000041 2.6e-06 56.6 60 50.0
RhsimUnG0192800 Rhododendron simsii HOM05D000097 ORTHO05D000041 2.6e-06 56.6 54 50.0
SalBow8G5551 Salvia bowleyana HOM05D000097 ORTHO05D000041 2.6e-06 56.6 46 58.7
Ah.09g235320 Amaranthus hybridus HOM05D000097 ORTHO05D000041 3.4e-06 56.2 82 42.7
AL2G23970 Arabidopsis lyrata HOM05D000097 ORTHO05D000041 3.4e-06 56.2 62 43.5
Cc07_g17930 Coffea canephora HOM05D000097 ORTHO05D000041 3.4e-06 56.2 54 55.6
Cc10_g09010 Coffea canephora HOM05D000097 ORTHO05D000041 3.4e-06 56.2 65 44.6
ECA236G3757 Erigeron canadensis HOM05D000097 ORTHO05D000041 3.4e-06 56.2 65 52.3
ECA247G3079 Erigeron canadensis HOM05D000097 ORTHO05D000041 3.4e-06 56.2 84 34.5
HanXRQChr11g0353591 Helianthus annuus HOM05D000097 ORTHO05D000041 3.4e-06 56.2 48 54.2
Lj4A850G25 Lonicera japonica HOM05D000097 ORTHO05D000041 3.4e-06 56.2 58 53.4
Nn1g06185 Nelumbo nucifera HOM05D000097 ORTHO05D000041 3.4e-06 56.2 56 51.8
PSO135G0535 Papaver somniferum HOM05D000097 ORTHO05D000041 3.4e-06 56.2 84 38.1
Rhsim05G0010300 Rhododendron simsii HOM05D000097 ORTHO05D000041 3.4e-06 56.2 64 42.2
Rhsim10G0137600 Rhododendron simsii HOM05D000097 ORTHO05D000041 3.4e-06 56.2 46 58.7
Solyc02g068670.3 Solanum lycopersicum HOM05D000097 ORTHO05D000041 3.4e-06 56.2 62 50.0
AUR62028075 Chenopodium quinoa HOM05D000097 ORTHO05D000041 4.5e-06 55.8 83 41.0
Ciclev10003198m.g Citrus clementina HOM05D000097 ORTHO05D000041 4.5e-06 55.8 68 45.6
Ciclev10003229m.g Citrus clementina HOM05D000097 ORTHO05D000041 4.5e-06 55.8 68 44.1
Cc10_g08900 Coffea canephora HOM05D000097 ORTHO05D000041 4.5e-06 55.8 42 61.9
COL.COLO4_30951 Corchorus olitorius HOM05D000097 ORTHO05D000041 4.5e-06 55.8 49 57.1
DCAR_022344 Daucus carota HOM05D000097 ORTHO05D000041 4.5e-06 55.8 70 47.1
Dinv23993 Davidia involucrata HOM05D000097 ORTHO05D000041 4.5e-06 55.8 63 46.0
Nitab4.5_0025145g0010 Nicotiana tabacum HOM05D000097 ORTHO05D000041 4.5e-06 55.8 62 50.0
PSO724G1159 Papaver somniferum HOM05D000097 ORTHO05D000041 4.5e-06 55.8 85 37.6
PSO782G2547 Papaver somniferum HOM05D000097 ORTHO05D000041 4.5e-06 55.8 77 39.0
PSO782G3391 Papaver somniferum HOM05D000097 ORTHO05D000041 4.5e-06 55.8 77 39.0
Prupe.7G199600 Prunus persica HOM05D000097 ORTHO05D000041 4.5e-06 55.8 83 44.6
QL02p082607 Quercus lobata HOM05D000097 ORTHO05D000041 4.5e-06 55.8 56 51.8
Sed0004731 Sechium edule HOM05D000097 ORTHO05D000041 4.5e-06 55.8 54 55.6
Thecc.10G157900 Theobroma cacao HOM05D000097 ORTHO05D000041 4.5e-06 55.8 63 47.6
vmacro12855 Vaccinium macrocarpon HOM05D000097 ORTHO05D000041 4.5e-06 55.8 46 58.7
Aa31LG11G5540 Aethionema arabicum HOM05D000097 ORTHO05D000041 5.8e-06 55.5 68 44.1
Aa31LG9G8340 Aethionema arabicum HOM05D000097 ORTHO05D000041 5.8e-06 55.5 76 40.8
arahy.Tifrunner.gnm1.ann1.YX4J0R Arachis hypogaea HOM05D000097 ORTHO05D000041 5.8e-06 55.5 55 54.5
CANSAT35G1022 Cannabis sativa HOM05D000097 ORTHO05D000041 5.8e-06 55.5 52 51.9
AUR62012645 Chenopodium quinoa HOM05D000097 ORTHO05D000041 5.8e-06 55.5 57 50.9
AUR62022009 Chenopodium quinoa HOM05D000097 ORTHO05D000041 5.8e-06 55.5 57 50.9
AUR62038062 Chenopodium quinoa HOM05D000097 ORTHO05D000041 5.8e-06 55.5 47 59.6
ClCG03G004300 Citrullus lanatus HOM05D000097 ORTHO05D000041 5.8e-06 55.5 54 55.6
Ciclev10003926m.g Citrus clementina HOM05D000097 ORTHO05D000041 5.8e-06 55.5 68 45.6
Cc07_g17960 Coffea canephora HOM05D000097 ORTHO05D000041 5.8e-06 55.5 46 58.7
Cc07_g17970 Coffea canephora HOM05D000097 ORTHO05D000041 5.8e-06 55.5 64 48.4
Cc10_g08960 Coffea canephora HOM05D000097 ORTHO05D000041 5.8e-06 55.5 42 59.5
MELO3C002414.2 Cucumis melo HOM05D000097 ORTHO05D000041 5.8e-06 55.5 54 55.6
CsaV3_1G010260 Cucumis sativus L. HOM05D000097 ORTHO05D000041 5.8e-06 55.5 54 55.6
Dinv01231 Davidia involucrata HOM05D000097 ORTHO05D000041 5.8e-06 55.5 82 41.5
Dinv10726 Davidia involucrata HOM05D000097 ORTHO05D000041 5.8e-06 55.5 49 49.0
HanXRQChr11g0353581 Helianthus annuus HOM05D000097 ORTHO05D000041 5.8e-06 55.5 48 52.1
Lsat_1_v5_gn_2_40481 Lactuca sativa HOM05D000097 ORTHO05D000041 5.8e-06 55.5 62 48.4
MD03G1146300 Malus domestica HOM05D000097 ORTHO05D000041 5.8e-06 55.5 63 44.4
Oeu044115.1 Olea europaea HOM05D000097 ORTHO05D000041 5.8e-06 55.5 42 61.9
Peaxi162Scf00149g00022 Petunia axillaris HOM05D000097 ORTHO05D000041 5.8e-06 55.5 62 50.0
Psat2g139360 Pisum sativum HOM05D000097 ORTHO05D000041 5.8e-06 55.5 43 60.5
Psat2g139560 Pisum sativum HOM05D000097 ORTHO05D000041 5.8e-06 55.5 67 44.8
Potri.008G023700 Populus trichocarpa HOM05D000097 ORTHO05D000041 5.8e-06 55.5 46 56.5
QL02p083366 Quercus lobata HOM05D000097 ORTHO05D000041 5.8e-06 55.5 60 48.3
QL11p015794 Quercus lobata HOM05D000097 ORTHO05D000041 5.8e-06 55.5 98 39.8
Thecc.02G008300 Theobroma cacao HOM05D000097 ORTHO05D000041 5.8e-06 55.5 48 56.2
Thecc.10G158100 Theobroma cacao HOM05D000097 ORTHO05D000041 5.8e-06 55.5 63 47.6
Aa31LG8G5740 Aethionema arabicum HOM05D000097 ORTHO05D000041 7.6e-06 55.1 84 39.3
AUR62035627 Chenopodium quinoa HOM05D000097 ORTHO05D000041 7.6e-06 55.1 57 50.9
Cc00_g25640 Coffea canephora HOM05D000097 ORTHO05D000041 7.6e-06 55.1 42 61.9
Migut.M01987 Erythranthe guttata HOM05D000097 ORTHO05D000041 7.6e-06 55.1 62 45.2
Glyma.01G013300 Glycine max HOM05D000097 ORTHO05D000041 7.6e-06 55.1 68 47.1
Lsat_1_v5_gn_1_43320 Lactuca sativa HOM05D000097 ORTHO05D000041 7.6e-06 55.1 44 59.1
Nn8g40671 Nelumbo nucifera HOM05D000097 ORTHO05D000041 7.6e-06 55.1 72 44.4
Phvul.009G240400 Phaseolus vulgaris HOM05D000097 ORTHO05D000041 7.6e-06 55.1 54 46.3
QL02p084534 Quercus lobata HOM05D000097 ORTHO05D000041 7.6e-06 55.1 48 54.2
Rhsim05G0007900 Rhododendron simsii HOM05D000097 ORTHO05D000041 7.6e-06 55.1 45 53.3
Rhsim05G0008000 Rhododendron simsii HOM05D000097 ORTHO05D000041 7.6e-06 55.1 70 40.0
Thecc.10G160300 Theobroma cacao HOM05D000097 ORTHO05D000041 7.6e-06 55.1 63 46.0
TAR627G0118 Trochodendron aralioides HOM05D000097 ORTHO05D000041 7.6e-06 55.1 72 43.1
vmacro17198 Vaccinium macrocarpon HOM05D000097 ORTHO05D000041 7.6e-06 55.1 45 55.6
vmacro22581 Vaccinium macrocarpon HOM05D000097 ORTHO05D000041 7.6e-06 55.1 45 55.6
VMungo1309G0050 Vigna mungo HOM05D000097 ORTHO05D000041 7.6e-06 55.1 54 46.3
Ah.09g235280 Amaranthus hybridus HOM05D000097 ORTHO05D000041 9.9e-06 54.7 80 41.2
Ah.09g235310 Amaranthus hybridus HOM05D000097 ORTHO05D000041 9.9e-06 54.7 82 41.5
AT5G35810 Arabidopsis thaliana HOM05D000097 ORTHO05D000041 9.9e-06 54.7 80 37.5
CSS0026463 Camellia sinensis var. sinensis HOM05D000097 ORTHO05D000041 9.9e-06 54.7 67 46.3
AUR62012644 Chenopodium quinoa HOM05D000097 ORTHO05D000041 9.9e-06 54.7 57 50.9
AUR62022004 Chenopodium quinoa HOM05D000097 ORTHO05D000041 9.9e-06 54.7 80 40.0
AUR62022010 Chenopodium quinoa HOM05D000097 ORTHO05D000041 9.9e-06 54.7 57 50.9
Dinv09054 Davidia involucrata HOM05D000097 ORTHO05D000041 9.9e-06 54.7 41 65.9
ECA236G2161 Erigeron canadensis HOM05D000097 ORTHO05D000041 9.9e-06 54.7 56 55.4
FAN03G1465 Fragaria x ananassa HOM05D000097 ORTHO05D000041 9.9e-06 54.7 57 45.6
Glyma.09G208700 Glycine max HOM05D000097 ORTHO05D000041 9.9e-06 54.7 61 52.5
QL02p084321 Quercus lobata HOM05D000097 ORTHO05D000041 9.9e-06 54.7 80 40.0
QL11p014782 Quercus lobata HOM05D000097 ORTHO05D000041 9.9e-06 54.7 51 52.9
Rhsim05G0008700 Rhododendron simsii HOM05D000097 ORTHO05D000041 9.9e-06 54.7 45 53.3
Rhsim08G0003100 Rhododendron simsii HOM05D000097 ORTHO05D000041 9.9e-06 54.7 69 44.9
Hund19147 Selenicereus undatus HOM05D000097 ORTHO05D000041 9.9e-06 54.7 77 36.4
Hund21370 Selenicereus undatus HOM05D000097 ORTHO05D000041 9.9e-06 54.7 81 42.0
PGSC0003DMG400010440 Solanum tuberosum HOM05D000097 ORTHO05D000041 9.9e-06 54.7 62 48.4
TAR383G0033 Trochodendron aralioides HOM05D000097 ORTHO05D000041 9.9e-06 54.7 62 48.4
TAR626G0498 Trochodendron aralioides HOM05D000097 ORTHO05D000041 9.9e-06 54.7 63 42.9


User provided reference genes

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