Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 3.1e-306 1054.3 529 100.0
Prupe.1G544200 Prunus persica HOM05D005625 ORTHO05D007564 1.5e-215 753.1 534 71.0
Haze_13951 Corylus avellana HOM05D005625 ORTHO05D007564 3.3e-215 751.9 534 70.6
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 9.7e-215 750.4 534 70.8
CiPaw.04G063100 Carya illinoinensis HOM05D005625 ORTHO05D007564 1.8e-213 746.1 534 69.3
MD15G1395400 Malus domestica HOM05D005625 ORTHO05D007564 6.9e-213 744.2 532 70.5
GSVIVG01036380001 Vitis vinifera HOM05D005625 ORTHO05D007564 1.2e-212 743.4 534 69.3
TWI18G0532 Tripterygium wilfordii HOM05D005625 ORTHO05D007564 2.0e-212 742.7 536 70.1
CANSAT56G1751 Cannabis sativa HOM05D005625 ORTHO05D007564 2.6e-212 742.3 527 69.1
QL09p002063 Quercus lobata HOM05D005625 ORTHO05D007564 1.7e-211 739.6 532 69.7
Ciclev10014850m.g Citrus clementina HOM05D005625 ORTHO05D007564 1.2e-209 733.4 524 70.0
Thecc.08G177300 Theobroma cacao HOM05D005625 ORTHO05D007564 2.7e-209 732.3 533 68.9
Rhsim02G0173300 Rhododendron simsii HOM05D005625 ORTHO05D007564 4.6e-209 731.5 535 68.2
Potri.019G072700 Populus trichocarpa HOM05D005625 ORTHO05D007564 7.9e-209 730.7 540 68.7
CSS0007097 Camellia sinensis var. sinensis HOM05D005625 ORTHO05D007564 1.8e-208 729.6 536 67.9
COL.COLO4_24882 Corchorus olitorius HOM05D005625 ORTHO05D007564 4.4e-207 724.9 534 68.0
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 2.8e-206 722.2 531 67.8
Cfa008087 Carpinus fangiana HOM05D005625 ORTHO05D007564 4.8e-206 721.5 526 69.2
RcHm_v2.0_Chr7g0232101 Rosa chinensis HOM05D005625 ORTHO05D007564 1.1e-205 720.3 535 68.6
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 2.4e-205 719.2 531 68.4
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 5.3e-205 718.0 530 69.4
Gohir.D13G119200 Gossypium hirsutum HOM05D005625 ORTHO05D007564 9.1e-205 717.2 532 67.1
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 2.0e-204 716.1 557 65.9
Gorai.013G133700 Gossypium raimondii HOM05D005625 ORTHO05D007564 2.6e-204 715.7 532 66.9
Gohir.A13G116000 Gossypium hirsutum HOM05D005625 ORTHO05D007564 5.9e-204 714.5 534 66.9
CAN.G990.6 Capsicum annuum HOM05D005625 ORTHO05D007564 1.6e-201 706.4 533 64.9
FvH4_5g33370 Fragaria vesca HOM05D005625 ORTHO05D007564 1.6e-201 706.4 535 67.3
FAN18G2766 Fragaria x ananassa HOM05D005625 ORTHO05D007564 2.7e-201 705.7 535 67.3
Sopen11g018630 Solanum pennellii HOM05D005625 ORTHO05D007564 1.4e-200 703.4 533 64.7
Eucgr.K01840 Eucalyptus grandis HOM05D005625 ORTHO05D007564 1.8e-200 703.0 536 65.5
Lj7C421T14 Lonicera japonica HOM05D005625 ORTHO05D007564 1.8e-200 703.0 531 65.7
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 6.7e-200 701.0 532 66.5
AUR62024898 Chenopodium quinoa HOM05D005625 ORTHO05D007564 2.6e-199 699.1 532 66.5
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 4.8e-198 694.9 539 66.2
CsaV3_1G044090 Cucumis sativus L. HOM05D005625 ORTHO05D007564 1.1e-197 693.7 531 65.5
MELO3C011830.2 Cucumis melo HOM05D005625 ORTHO05D007564 1.4e-197 693.3 531 64.8
Phvul.006G130900 Phaseolus vulgaris HOM05D005625 ORTHO05D007564 5.3e-197 691.4 524 66.2
Glyma.09G021200 Glycine max HOM05D005625 ORTHO05D007564 9.1e-197 690.6 525 64.8
Lj6g0017830 Lotus japonicus HOM05D005625 ORTHO05D007564 1.2e-196 690.3 523 66.5
FAN04G0928 Fragaria x ananassa HOM05D005625 ORTHO05D007564 1.6e-196 689.9 554 64.3
AUR62030641 Chenopodium quinoa HOM05D005625 ORTHO05D007564 2.0e-196 689.5 548 64.4
Lalb_Chr15g0088631 Lupinus albus HOM05D005625 ORTHO05D007564 5.9e-196 688.0 529 65.4
Oeu028924.1 Olea europaea HOM05D005625 ORTHO05D007564 5.9e-196 688.0 531 65.0
Aqoxy5G00836 Aquilegia oxysepala HOM05D005625 ORTHO05D007564 1.0e-195 687.2 537 63.5
Medtr2g029250 Medicago truncatula HOM05D005625 ORTHO05D007564 2.9e-195 685.6 531 63.8
ECA232G1187 Erigeron canadensis HOM05D005625 ORTHO05D007564 7.2e-194 681.0 525 65.0
Sed0019265 Sechium edule HOM05D005625 ORTHO05D007564 1.2e-193 680.2 529 64.3
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 4.7e-193 678.3 575 61.6
PSO017G2953 Papaver somniferum HOM05D005625 ORTHO05D007564 6.7e-192 674.5 525 62.5
Cc10_g08740 Coffea canephora HOM05D005625 ORTHO05D007564 1.2e-191 673.7 530 63.4
DCAR_017431 Daucus carota HOM05D005625 ORTHO05D007564 9.7e-191 670.6 533 64.2
PSO170G6063 Papaver somniferum HOM05D005625 ORTHO05D007564 2.2e-190 669.5 525 62.5
Aa31LG4G9140 Aethionema arabicum HOM05D005625 ORTHO05D007564 5.3e-189 664.8 531 63.3
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 2.0e-188 662.9 533 63.8
AL2G31100 Arabidopsis lyrata HOM05D005625 ORTHO05D007564 4.5e-188 661.8 532 62.6
EL10Ac6g14591 Beta vulgaris HOM05D005625 ORTHO05D007564 4.5e-188 661.8 590 58.6
TPR.G17519 Trifolium pratense HOM05D005625 ORTHO05D007564 5.9e-188 661.4 531 61.6
MSTRG.25496 Avicennia marina HOM05D005625 ORTHO05D007564 7.7e-188 661.0 533 63.0
THA.LOC104810982 Tarenaya hassleriana HOM05D005625 ORTHO05D007564 1.7e-187 659.8 533 63.2
Migut.C01373 Erythranthe guttata HOM05D005625 ORTHO05D007564 2.9e-187 659.1 525 63.2
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 2.5e-186 656.0 537 62.2
Carub.0002s1829 Capsella rubella HOM05D005625 ORTHO05D007564 3.2e-186 655.6 532 61.8
AT1G71440 Arabidopsis thaliana HOM05D005625 ORTHO05D007564 1.2e-185 653.7 532 63.0
Lsat_1_v5_gn_2_82040 Lactuca sativa HOM05D005625 ORTHO05D007564 9.8e-183 644.0 532 62.4
Psat1g169440 Pisum sativum HOM05D005625 ORTHO05D007564 2.8e-182 642.5 530 60.2
CARHR291240 Cardamine hirsuta HOM05D005625 ORTHO05D007564 1.1e-181 640.6 532 61.3
Thhalv10018392m.g Eutrema salsugineum HOM05D005625 ORTHO05D007564 1.4e-181 640.2 532 60.9
Sp5g26600 Schrenkiella parvula HOM05D005625 ORTHO05D007564 1.2e-180 637.1 532 60.9
Duzib177G0227 Durio zibethinus HOM05D005625 ORTHO05D007564 2.0e-180 636.3 533 62.1
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 1.1e-178 630.6 543 61.3
arahy.Tifrunner.gnm1.ann1.23CDJN Arachis hypogaea HOM05D005625 ORTHO05D007564 6.1e-177 624.8 496 64.3
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 1.0e-176 624.0 583 56.9
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 8.3e-174 614.4 450 67.3
VMungo0540G1936 Vigna mungo HOM05D005625 ORTHO05D007564 1.4e-173 613.6 555 57.8
unitig_578.g16118 Utricularia gibba HOM05D005625 ORTHO05D007564 2.0e-172 609.8 540 58.1
Zm00001eb233200 Zea mays HOM05D005625 ORTHO05D007564 1.7e-171 606.7 536 59.1
Cpa.g.sc21.80 Carica papaya HOM05D005625 ORTHO05D007564 2.3e-171 606.3 442 67.9
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 3.8e-171 605.5 498 62.9
BraA07t31336Z Brassica rapa HOM05D005625 ORTHO05D007564 1.2e-167 594.0 534 58.8
BolC6t39611H Brassica oleracea HOM05D005625 ORTHO05D007564 3.4e-167 592.4 534 58.2
SGA_v2.0_scaffold118G32606 Striga asiatica HOM05D005625 ORTHO05D007564 2.9e-166 589.3 544 57.4
A07p37730 Brassica napus HOM05D005625 ORTHO05D007564 3.7e-166 589.0 534 58.4
HPP92_015711 Vanilla planifolia HOM05D005625 ORTHO05D007564 2.4e-165 586.3 525 58.5
BcaC08g46580 Brassica carinata HOM05D005625 ORTHO05D007564 7.0e-165 584.7 532 57.5
Nn5g27281 Nelumbo nucifera HOM05D005625 ORTHO05D007564 5.6e-162 575.1 437 65.4
HPP92_026650 Vanilla planifolia HOM05D005625 ORTHO05D007564 1.2e-161 573.9 525 57.5
C06p45600 Brassica napus HOM05D005625 ORTHO05D007564 4.1e-157 558.9 534 56.0
Ca_07151_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 3.3e-154 549.3 531 54.2
Ca_00793_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 2.4e-149 533.1 530 53.8
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 4.0e-144 515.8 412 62.4
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 1.2e-143 514.2 397 63.7
Peaxi162Scf00078g00533 Petunia axillaris HOM05D005625 ORTHO05D007564 2.2e-142 510.0 395 62.5
vmacro11035 Vaccinium macrocarpon HOM05D005625 ORTHO05D007564 3.5e-140 502.7 568 49.1
SMO145G0237 Selaginella moellendorffii HOM05D005625 ORTHO05D007564 2.4e-136 490.0 524 49.0
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 3.9e-131 472.6 543 48.1
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 1.9e-130 470.3 539 48.4
SHI16719 Sapria himalayana HOM05D005625 ORTHO05D007564 4.6e-116 422.5 505 47.9
Atru.chr11.652 Acer truncatum HOM05D005625 ORTHO05D007564 7.9e-116 421.8 284 71.8
Sabra15G0066200 Salix brachista HOM05D005625 ORTHO05D007564 5.3e-112 409.1 358 60.9
Sabra15G0066000 Salix brachista HOM05D005625 ORTHO05D007564 2.0e-111 407.1 358 60.6
ClCG03G011780 Citrullus lanatus HOM05D005625 ORTHO05D007564 1.5e-106 391.0 290 67.2
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 5.9e-103 379.0 551 40.1
AagrBONN_evm.TU.Sc2ySwM_344.4267 Anthoceros agrestis HOM05D005625 ORTHO05D007564 1.3e-102 377.9 468 45.9
CBR_g2823 Chara braunii HOM05D005625 ORTHO05D007564 2.0e-95 354.0 556 39.2
SEGI_17074 Sequoiadendron giganteum HOM05D005625 ORTHO05D007564 2.9e-86 323.6 284 60.2
AagrBONN_evm.TU.Sc2ySwM_344.5166 Anthoceros agrestis HOM05D005625 ORTHO05D007564 2.2e-81 307.4 378 46.8
FAN08G2869 Fragaria x ananassa HOM05D005625 ORTHO05D007564 6.5e-78 295.8 205 73.2
Nitab4.5_0000213g0250 Nicotiana tabacum HOM05D005625 ORTHO05D007564 9.7e-74 282.0 212 64.6
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 6.3e-73 279.3 575 33.9
PRCOL_00002543 Prasinoderma coloniale HOM05D005625 ORTHO05D007564 1.0e-67 261.9 563 32.3
Cre02.g095113 Chlamydomonas reinhardtii HOM05D005625 ORTHO05D007564 7.0e-56 222.6 531 33.5
Peaxi162Scf00078g00534 Petunia axillaris HOM05D005625 ORTHO05D007564 4.0e-51 206.8 135 72.6
Nitab4.5_0000213g0260 Nicotiana tabacum HOM05D005625 ORTHO05D007564 4.1e-48 196.8 130 72.3
PGSC0003DMG400019987 Solanum tuberosum HOM05D005625 ORTHO05D007564 7.0e-48 196.1 204 53.9
ClCG03G011750 Citrullus lanatus HOM05D005625 ORTHO05D007564 1.6e-47 194.9 152 62.5
Os05g0105300 Oryza sativa ssp. japonica HOM05D005625 ORTHO05D007564 1.6e-44 184.9 168 54.8
Glyma.15G127567 Glycine max HOM05D005625 ORTHO05D007564 2.3e-43 181.0 136 64.0
Nitab4.5_0001155g0020 Nicotiana tabacum HOM05D005625 ORTHO05D007564 8.9e-35 152.5 113 67.3
Solyc11g042500.3 Solanum lycopersicum HOM05D005625 ORTHO05D007564 2.4e-32 144.4 99 68.7
Glyma.15G127633 Glycine max HOM05D005625 ORTHO05D007564 1.3e-30 138.7 130 51.5
Hund08558 Selenicereus undatus HOM05D005625 ORTHO05D007564 1.9e-29 134.8 85 77.6
Cfa026593 Carpinus fangiana HOM05D005625 ORTHO05D007564 9.9e-26 122.5 469 25.8
BcaB04g17633 Brassica carinata HOM05D005625 ORTHO05D007564 1.2e-23 115.5 102 58.8
ClCG03G011760 Citrullus lanatus HOM05D000004 ORTHO05D000002 2.1e-15 88.2 84 54.8
arahy.Tifrunner.gnm1.ann1.6SNM9F Arachis hypogaea HOM05D005625 ORTHO05D007564 5.1e-14 83.6 115 47.8
arahy.Tifrunner.gnm1.ann1.GWKT0Q Arachis hypogaea HOM05D005625 ORTHO05D007564 3.6e-12 77.4 138 39.9
TPR.G26547 Trifolium pratense HOM05D005625 ORTHO05D022022 8.1e-12 76.3 91 42.9
A02p17310 Brassica napus HOM05D005625 ORTHO05D022022 5.3e-11 73.6 72 55.6
C02p28970 Brassica napus HOM05D005625 ORTHO05D022022 5.3e-11 73.6 88 46.6
BraA02t06779Z Brassica rapa HOM05D005625 ORTHO05D022022 5.3e-11 73.6 72 55.6
BolC2t08946H Brassica oleracea HOM05D005625 ORTHO05D022022 3.4e-10 70.9 71 52.1
Lsat_1_v5_gn_3_107600 Lactuca sativa HOM05D000629 ORTHO05D013393 4.5e-10 70.5 69 49.3
Cpa.g.c47759 Carica papaya HOM05D005625 ORTHO05D007564 3.8e-09 67.4 48 64.6
PSO478G1928 Papaver somniferum HOM05D005625 ORTHO05D002418 4.9e-09 67.0 59 54.2
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 1.1e-08 65.9 295 23.7
Cre01.g023550 Chlamydomonas reinhardtii HOM05D016773 ORTHO05D019668 2.7e-07 61.2 273 27.8
SMO009G0022 Selaginella moellendorffii HOM05D016773 ORTHO05D019668 4.6e-07 60.5 336 25.0
arahy.Tifrunner.gnm1.ann1.QJV3PU Arachis hypogaea HOM05D003356 ORTHO05D086117 3.0e-06 57.8 93 40.9
BolC2t08947H Brassica oleracea HOM05D005625 ORTHO05D022022 3.0e-06 57.8 87 40.2


User provided reference genes

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