Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1297 Punica granatum HOM05D000053 ORTHO05D000035 5.1e-52 208.0 150 100.0
PGR019G0002 Punica granatum HOM05D000053 ORTHO05D000035 4.9e-31 138.3 156 78.2
PGR044G0600 Punica granatum HOM05D000053 ORTHO05D000035 8.4e-31 137.5 156 76.9
PGR044G1913 Punica granatum HOM05D000053 ORTHO05D000035 7.1e-30 134.4 156 76.9
PGR044G1919 Punica granatum HOM05D000053 ORTHO05D000035 1.1e-27 127.1 156 75.0
PGR083G1636 Punica granatum HOM05D000053 ORTHO05D000035 7.4e-27 124.4 154 72.7
PGR083G2274 Punica granatum HOM05D000053 ORTHO05D000035 3.2e-22 109.0 158 68.4
PGR083G0829 Punica granatum HOM05D000053 ORTHO05D000035 1.6e-21 106.7 164 67.1
PGR083G1875 Punica granatum HOM05D000053 ORTHO05D000035 1.8e-20 103.2 159 66.0
PGR083G2375 Punica granatum HOM05D000053 ORTHO05D000035 5.3e-17 91.7 156 64.7
PGR044G1088 Punica granatum HOM05D000053 ORTHO05D000035 1.2e-16 90.5 158 63.9
PGR083G1345 Punica granatum HOM05D000053 ORTHO05D000035 5.9e-16 88.2 156 64.7
PGR083G2151 Punica granatum HOM05D000053 ORTHO05D000035 1.0e-15 87.4 158 63.9
PGR083G1407 Punica granatum HOM05D000053 ORTHO05D000035 4.2e-14 82.0 146 54.1
arahy.Tifrunner.gnm1.ann1.RES0SR Arachis hypogaea HOM05D000053 ORTHO05D000035 5.5e-14 81.6 86 52.3
Glyma.14G173400 Glycine max HOM05D000053 ORTHO05D000035 7.2e-14 81.3 148 36.5
CAN.G575.9 Capsicum annuum HOM05D000053 ORTHO05D000035 6.1e-13 78.2 143 62.2
PGR083G2395 Punica granatum HOM05D000053 ORTHO05D000035 6.1e-13 78.2 136 66.2
PGR083G2807 Punica granatum HOM05D000053 ORTHO05D000035 1.0e-12 77.4 82 54.9
PGR044G2324 Punica granatum HOM05D000053 ORTHO05D000035 1.8e-12 76.6 155 60.6
DCAR_028662 Daucus carota HOM05D000053 ORTHO05D000035 2.3e-12 76.3 141 36.2
Eucgr.H00987 Eucalyptus grandis HOM05D000053 ORTHO05D000035 3.0e-12 75.9 138 37.7
Manes.03G091122 Manihot esculenta HOM05D000053 ORTHO05D000035 3.9e-12 75.5 137 65.7
PGR014G0003 Punica granatum HOM05D000053 ORTHO05D000035 6.7e-12 74.7 153 62.1
PGR083G0629 Punica granatum HOM05D000053 ORTHO05D000035 6.7e-12 74.7 153 61.4
PGR083G1115 Punica granatum HOM05D000053 ORTHO05D000035 8.8e-12 74.3 156 62.2
Rhsim05G0221100 Rhododendron simsii HOM05D000053 ORTHO05D000448 8.8e-12 74.3 85 49.4
Eucgr.I00416 Eucalyptus grandis HOM05D000053 ORTHO05D000035 1.1e-11 73.9 156 60.9
Gorai.012G117200 Gossypium raimondii HOM05D000053 ORTHO05D000448 1.1e-11 73.9 136 66.2
QL08p008585 Quercus lobata HOM05D000053 ORTHO05D000035 1.1e-11 73.9 147 42.9
DCAR_001832 Daucus carota HOM05D000053 ORTHO05D000035 1.5e-11 73.6 136 66.9
Ciclev10015570m.g Citrus clementina HOM05D000053 ORTHO05D000035 1.9e-11 73.2 137 59.9
Eucgr.F00566 Eucalyptus grandis HOM05D000053 ORTHO05D000035 1.9e-11 73.2 147 53.1
PGR014G0001 Punica granatum HOM05D000053 ORTHO05D000035 1.9e-11 73.2 153 61.4
Gohir.A04G094000 Gossypium hirsutum HOM05D000053 ORTHO05D000448 2.5e-11 72.8 136 65.4
PGR042G1817 Punica granatum HOM05D000053 ORTHO05D000035 4.3e-11 72.0 153 60.8
Thecc.10G168200 Theobroma cacao HOM05D000053 ORTHO05D000035 5.7e-11 71.6 136 36.8
arahy.Tifrunner.gnm1.ann1.8NYF5B Arachis hypogaea HOM05D000053 ORTHO05D000035 9.7e-11 70.9 75 52.0
Eucgr.F00297 Eucalyptus grandis HOM05D000053 ORTHO05D000035 1.7e-10 70.1 155 58.1
Eucgr.F00289 Eucalyptus grandis HOM05D000053 ORTHO05D000035 2.8e-10 69.3 155 60.0
Gohir.D04G133300 Gossypium hirsutum HOM05D000053 ORTHO05D000448 2.8e-10 69.3 134 64.2
Eucgr.F00281 Eucalyptus grandis HOM05D000053 ORTHO05D000035 3.7e-10 68.9 155 59.4
Eucgr.F00285 Eucalyptus grandis HOM05D000053 ORTHO05D000035 4.8e-10 68.6 155 60.0
Medtr5g086620 Medicago truncatula HOM05D000053 ORTHO05D000035 6.3e-10 68.2 149 34.9
CAN.G2075.5 Capsicum annuum HOM05D000053 ORTHO05D000035 8.2e-10 67.8 88 48.9
Sed0010402 Sechium edule HOM05D000053 ORTHO05D000448 1.1e-09 67.4 69 52.2
Gohir.D04G133100 Gossypium hirsutum HOM05D000053 ORTHO05D000448 1.4e-09 67.0 134 63.4
MBI14_g23361_MAGBIO Magnolia biondii HOM05D000053 ORTHO05D000448 2.4e-09 66.2 68 48.5
CAN.G1579.20 Capsicum annuum HOM05D000053 ORTHO05D000035 3.1e-09 65.9 70 54.3
PGR083G0493 Punica granatum HOM05D000053 ORTHO05D000035 4.1e-09 65.5 153 58.8
PGR119G0538 Punica granatum HOM05D000053 ORTHO05D000035 4.1e-09 65.5 152 61.2
Glyma.02G271200 Glycine max HOM05D000053 ORTHO05D000035 6.9e-09 64.7 66 54.5
Medtr4g417270 Medicago truncatula HOM05D000053 ORTHO05D000448 6.9e-09 64.7 134 59.0
Gohir.D05G356833 Gossypium hirsutum HOM05D000053 ORTHO05D000035 9.1e-09 64.3 149 60.4
Gorai.009G389100 Gossypium raimondii HOM05D000053 ORTHO05D000035 9.1e-09 64.3 149 60.4
PGR083G0213 Punica granatum HOM05D000053 ORTHO05D000035 9.1e-09 64.3 156 58.3
PGR083G1288 Punica granatum HOM05D000053 ORTHO05D000035 9.1e-09 64.3 156 58.3
PGR095G0001 Punica granatum HOM05D000053 ORTHO05D000035 9.1e-09 64.3 156 58.3
Glyma.14G173600 Glycine max HOM05D000053 ORTHO05D000035 1.2e-08 63.9 151 58.9
Medtr4g064760 Medicago truncatula HOM05D000053 ORTHO05D000035 1.2e-08 63.9 152 57.2
Eucgr.F00286 Eucalyptus grandis HOM05D000053 ORTHO05D000035 1.5e-08 63.5 153 59.5
arahy.Tifrunner.gnm1.ann1.06NKS3 Arachis hypogaea HOM05D000053 ORTHO05D000035 2.0e-08 63.2 150 57.3
arahy.Tifrunner.gnm1.ann1.D3FG0R Arachis hypogaea HOM05D000053 ORTHO05D000035 2.0e-08 63.2 148 56.8
Ciclev10017514m.g Citrus clementina HOM05D000053 ORTHO05D000035 2.0e-08 63.2 156 57.7
TPR.G22217 Trifolium pratense HOM05D000053 ORTHO05D000035 2.0e-08 63.2 137 62.0
CANSAT11G2552 Cannabis sativa HOM05D000053 ORTHO05D000035 2.6e-08 62.8 137 61.3
Ciclev10017615m.g Citrus clementina HOM05D000053 ORTHO05D000035 2.6e-08 62.8 136 64.0
Eucgr.F00292 Eucalyptus grandis HOM05D000053 ORTHO05D000035 2.6e-08 62.8 153 58.8
Eucgr.F00512 Eucalyptus grandis HOM05D000053 ORTHO05D000035 2.6e-08 62.8 153 59.5
Eucgr.F02779 Eucalyptus grandis HOM05D000053 ORTHO05D000035 2.6e-08 62.8 130 53.1
TPR.G29912 Trifolium pratense HOM05D000053 ORTHO05D000035 2.6e-08 62.8 138 60.1
Eucgr.F00511 Eucalyptus grandis HOM05D000053 ORTHO05D000035 3.4e-08 62.4 74 51.4
LjContig00564g0006228 Lotus japonicus HOM05D000053 ORTHO05D000035 3.4e-08 62.4 137 58.4
Ciclev10023586m.g Citrus clementina HOM05D000053 ORTHO05D000035 4.5e-08 62.0 73 50.7
Gohir.D05G375550 Gossypium hirsutum HOM05D000053 ORTHO05D000035 5.9e-08 61.6 141 32.6
TWI73G0520 Tripterygium wilfordii HOM05D000053 ORTHO05D000035 5.9e-08 61.6 71 47.9
arahy.Tifrunner.gnm1.ann1.PPH0ND Arachis hypogaea HOM05D000053 ORTHO05D000035 7.7e-08 61.2 147 58.5
Ca_06124_v3 Cicer arietinum L. HOM05D000053 ORTHO05D000035 1.0e-07 60.8 137 59.9
Glyma.14G173900 Glycine max HOM05D000053 ORTHO05D000035 1.0e-07 60.8 69 50.7
CAN.G2075.4 Capsicum annuum HOM05D000053 ORTHO05D000035 1.3e-07 60.5 127 34.6
Eucgr.F00606 Eucalyptus grandis HOM05D000053 ORTHO05D000035 1.3e-07 60.5 75 48.0
Gohir.D05G376232 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.3e-07 60.5 148 31.1
QL04p080539 Quercus lobata HOM05D000053 ORTHO05D000035 1.3e-07 60.5 137 60.6
RcHm_v2.0_Chr5g0042831 Rosa chinensis HOM05D000053 ORTHO05D000035 1.3e-07 60.5 136 62.5
PGSC0003DMG400032286 Solanum tuberosum HOM05D000053 ORTHO05D000035 1.3e-07 60.5 69 50.7
arahy.Tifrunner.gnm1.ann1.2762JH Arachis hypogaea HOM05D000053 ORTHO05D000035 1.7e-07 60.1 147 57.8
arahy.Tifrunner.gnm1.ann1.J2GCLC Arachis hypogaea HOM05D000053 ORTHO05D000035 1.7e-07 60.1 150 56.7
CANSAT11G2220 Cannabis sativa HOM05D000053 ORTHO05D000035 1.7e-07 60.1 137 59.9
COL.COLO4_17410 Corchorus olitorius HOM05D000053 ORTHO05D000035 1.7e-07 60.1 156 56.4
PGR083G1593 Punica granatum HOM05D000053 ORTHO05D000035 1.7e-07 60.1 69 52.2
GSVIVG01036792001 Vitis vinifera HOM05D000053 ORTHO05D000035 1.7e-07 60.1 63 54.0
Gohir.A01G087600 Gossypium hirsutum HOM05D000053 ORTHO05D000035 2.2e-07 59.7 144 56.9
TPR.G2932 Trifolium pratense HOM05D000053 ORTHO05D000035 2.2e-07 59.7 152 56.6
MBI14_g18955_MAGBIO Magnolia biondii HOM05D000053 ORTHO05D000448 2.9e-07 59.3 94 41.5
Peaxi162Scf00086g00054 Petunia axillaris HOM05D000053 ORTHO05D000035 2.9e-07 59.3 62 56.5
PGR142G0406 Punica granatum HOM05D000053 ORTHO05D000035 2.9e-07 59.3 128 56.2
QL04p065651 Quercus lobata HOM05D000053 ORTHO05D000035 2.9e-07 59.3 137 60.6
QL04p067907 Quercus lobata HOM05D000053 ORTHO05D000035 2.9e-07 59.3 137 61.3
Solyc12g009690.1 Solanum lycopersicum HOM05D000053 ORTHO05D000035 2.9e-07 59.3 75 48.0
arahy.Tifrunner.gnm1.ann1.BEX3CA Arachis hypogaea HOM05D000053 ORTHO05D000035 3.8e-07 58.9 143 57.3
Ciclev10018217m.g Citrus clementina HOM05D000053 ORTHO05D000035 3.8e-07 58.9 156 50.6
Eucgr.F00522 Eucalyptus grandis HOM05D000053 ORTHO05D000035 3.8e-07 58.9 142 57.0
Lj5P390T8 Lonicera japonica HOM05D000053 ORTHO05D000035 3.8e-07 58.9 74 45.9
Psat0s2558g0040 Pisum sativum HOM05D000053 ORTHO05D000035 3.8e-07 58.9 152 57.9
Psat0ss1776g0040 Pisum sativum HOM05D000053 ORTHO05D000035 3.8e-07 58.9 137 61.3
QL04p079104 Quercus lobata HOM05D000053 ORTHO05D000035 3.8e-07 58.9 137 60.6
RcHm_v2.0_Chr5g0043131 Rosa chinensis HOM05D000053 ORTHO05D000035 3.8e-07 58.9 136 61.8
TPR.G39360 Trifolium pratense HOM05D000053 ORTHO05D000035 3.8e-07 58.9 156 35.9
arahy.Tifrunner.gnm1.ann1.PZ8KIT Arachis hypogaea HOM05D000053 ORTHO05D000035 5.0e-07 58.5 143 57.3
Medtr5g063740 Medicago truncatula HOM05D000053 ORTHO05D000035 5.0e-07 58.5 147 57.8
QL12p009182 Quercus lobata HOM05D000053 ORTHO05D000035 5.0e-07 58.5 137 60.6
Dinv05364 Davidia involucrata HOM05D000053 ORTHO05D000035 6.5e-07 58.2 136 55.1
Eucgr.I00219 Eucalyptus grandis HOM05D000053 ORTHO05D000035 6.5e-07 58.2 145 52.4
Gohir.A01G228133 Gossypium hirsutum HOM05D000053 ORTHO05D000448 6.5e-07 58.2 62 51.6
Medtr5g086630 Medicago truncatula HOM05D000053 ORTHO05D000035 6.5e-07 58.2 148 57.4
arahy.Tifrunner.gnm1.ann1.T4Y6AK Arachis hypogaea HOM05D000053 ORTHO05D000035 8.5e-07 57.8 152 55.3
RcHm_v2.0_Chr5g0042881 Rosa chinensis HOM05D000053 ORTHO05D000035 8.5e-07 57.8 136 60.3
Eucgr.H00982 Eucalyptus grandis HOM05D000053 ORTHO05D000035 1.1e-06 57.4 147 57.1
Glyma.14G042100 Glycine max HOM05D000053 ORTHO05D000035 1.1e-06 57.4 141 59.6
Eucgr.F00560 Eucalyptus grandis HOM05D000053 ORTHO05D000035 1.4e-06 57.0 138 59.4
Eucgr.F00607 Eucalyptus grandis HOM05D000053 ORTHO05D000035 1.4e-06 57.0 149 57.0
Glyma.14G106400 Glycine max HOM05D000053 ORTHO05D000035 1.4e-06 57.0 137 61.3
Gohir.D05G382201 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.4e-06 57.0 60 53.3
Medtr5g087090 Medicago truncatula HOM05D000053 ORTHO05D000035 1.4e-06 57.0 137 59.9
QL02p100706 Quercus lobata HOM05D000053 ORTHO05D000035 1.4e-06 57.0 152 54.6
CAN.G1579.25 Capsicum annuum HOM05D000053 ORTHO05D000035 1.9e-06 56.6 64 51.6
CAN.G1768.1 Capsicum annuum HOM05D000053 ORTHO05D000058 1.9e-06 56.6 64 51.6
CAN.G2075.2 Capsicum annuum HOM05D000053 ORTHO05D000035 1.9e-06 56.6 64 51.6
CAN.G564.14 Capsicum annuum HOM05D000053 ORTHO05D000035 1.9e-06 56.6 55 58.2
MELO3C009143.2 Cucumis melo HOM05D000053 ORTHO05D000448 1.9e-06 56.6 136 61.0
Glyma.14G044400 Glycine max HOM05D000053 ORTHO05D000035 1.9e-06 56.6 152 56.6
Sopen12g004660 Solanum pennellii HOM05D000524 ORTHO05D000381 1.9e-06 56.6 74 45.9
CSS0003982 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 2.5e-06 56.2 136 61.8
CsaV3_3G033520 Cucumis sativus L. HOM05D000053 ORTHO05D000448 2.5e-06 56.2 135 60.7
DCAR_012081 Daucus carota HOM05D000053 ORTHO05D000035 2.5e-06 56.2 39 71.8
Glyma.14G042300 Glycine max HOM05D000053 ORTHO05D000035 2.5e-06 56.2 141 59.6
Glyma.14G173300 Glycine max HOM05D000053 ORTHO05D000035 2.5e-06 56.2 137 59.9
Medtr5g086550 Medicago truncatula HOM05D000053 ORTHO05D000035 2.5e-06 56.2 148 56.8
A05p26570 Brassica napus HOM05D000053 ORTHO05D000035 3.2e-06 55.8 75 44.0
CSS0016185 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 3.2e-06 55.8 57 52.6
Eucgr.A00575 Eucalyptus grandis HOM05D000053 ORTHO05D000448 3.2e-06 55.8 59 50.8
Hma1.2p1_0703F.1_g206440 Hydrangea macrophylla HOM05D000053 ORTHO05D000035 3.2e-06 55.8 57 52.6
Medtr5g087320 Medicago truncatula HOM05D000053 ORTHO05D000035 3.2e-06 55.8 137 59.1
QL07p003288 Quercus lobata HOM05D000053 ORTHO05D000035 3.2e-06 55.8 154 57.1
arahy.Tifrunner.gnm1.ann1.WXTN0P Arachis hypogaea HOM05D000053 ORTHO05D000035 4.2e-06 55.5 150 55.3
CAN.G21.7 Capsicum annuum HOM05D000053 ORTHO05D000035 4.2e-06 55.5 147 29.3
Eucgr.F00574 Eucalyptus grandis HOM05D000053 ORTHO05D000035 4.2e-06 55.5 139 58.3
Gorai.009G444500 Gossypium raimondii HOM05D000053 ORTHO05D000035 4.2e-06 55.5 78 47.4
Cfa005795 Carpinus fangiana HOM05D000053 ORTHO05D000448 5.5e-06 55.1 65 52.3
Eucgr.F00731 Eucalyptus grandis HOM05D000053 ORTHO05D000035 5.5e-06 55.1 57 49.1
Lsat_1_v5_gn_8_157940 Lactuca sativa HOM05D000071 ORTHO05D000029 5.5e-06 55.1 135 55.6
Medtr5g086530 Medicago truncatula HOM05D000053 ORTHO05D000035 5.5e-06 55.1 148 57.4
CANSAT11G1269 Cannabis sativa HOM05D000053 ORTHO05D000035 9.4e-06 54.3 134 61.2
COL.COLO4_07053 Corchorus olitorius HOM05D000053 ORTHO05D000035 9.4e-06 54.3 154 53.2
Eucgr.K00622 Eucalyptus grandis HOM05D000053 ORTHO05D000035 9.4e-06 54.3 63 52.4
LjContig00310g0014828 Lotus japonicus HOM05D000053 ORTHO05D000035 9.4e-06 54.3 142 54.9
Medtr5g086810 Medicago truncatula HOM05D000053 ORTHO05D000035 9.4e-06 54.3 137 58.4
TPR.G31824 Trifolium pratense HOM05D000053 ORTHO05D000035 9.4e-06 54.3 137 59.1


User provided reference genes

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