Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 1.1e-184 649.8 326 100.0
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 1.2e-130 470.3 324 72.8
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 5.9e-130 468.0 321 72.0
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 8.5e-129 464.2 316 73.1
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 4.2e-128 461.8 316 71.8
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 4.2e-128 461.8 316 73.4
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 1.6e-127 459.9 321 72.6
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 6.1e-127 458.0 314 74.5
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 8.0e-127 457.6 324 70.7
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.0e-126 457.2 324 71.6
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 1.8e-126 456.4 324 70.7
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 4.8e-124 448.4 311 71.1
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 6.3e-124 448.0 304 72.4
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 8.3e-124 447.6 317 70.0
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 2.4e-123 446.0 304 72.4
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 3.1e-123 445.7 329 69.9
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 4.1e-123 445.3 321 71.0
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 9.1e-123 444.1 307 71.0
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 9.1e-123 444.1 314 71.3
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 9.1e-123 444.1 316 70.9
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.2e-122 443.7 321 68.8
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 1.6e-122 443.4 326 69.0
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 1.6e-122 443.4 327 69.1
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 2.0e-122 443.0 304 71.7
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 2.7e-122 442.6 316 70.6
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 2.7e-122 442.6 324 68.2
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 3.5e-122 442.2 321 68.2
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 5.9e-122 441.4 327 68.5
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 7.7e-122 441.0 311 69.8
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 7.7e-122 441.0 310 69.4
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 1.0e-121 440.7 324 68.5
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 1.7e-121 439.9 321 69.5
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 2.3e-121 439.5 322 69.3
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 2.3e-121 439.5 321 68.5
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 2.9e-121 439.1 325 68.3
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 2.9e-121 439.1 317 69.1
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 3.8e-121 438.7 324 67.0
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 3.8e-121 438.7 325 66.8
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 3.2e-120 435.6 314 69.1
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 5.5e-120 434.9 308 68.8
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 9.5e-120 434.1 311 67.8
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 9.5e-120 434.1 305 69.8
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 1.6e-119 433.3 330 67.3
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 2.1e-119 433.0 324 67.3
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 2.8e-119 432.6 321 68.5
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 8.0e-119 431.0 307 67.8
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 1.8e-118 429.9 324 67.6
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 4.0e-118 428.7 311 67.8
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 6.8e-118 427.9 324 66.4
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 8.8e-118 427.6 324 66.7
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 1.2e-117 427.2 312 67.6
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 3.4e-117 425.6 320 66.2
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 3.4e-117 425.6 313 68.4
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 4.4e-117 425.2 308 67.5
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 4.4e-117 425.2 316 67.1
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 9.8e-117 424.1 312 68.6
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 1.3e-116 423.7 330 65.2
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.7e-116 423.3 351 63.5
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 1.7e-116 423.3 339 64.6
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 2.2e-116 422.9 310 67.7
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 3.7e-116 422.2 309 68.9
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 4.9e-116 421.8 312 68.3
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 8.3e-116 421.0 350 62.9
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 2.4e-115 419.5 312 67.9
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 2.4e-115 419.5 314 65.9
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 3.1e-115 419.1 316 67.4
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 4.1e-115 418.7 324 67.0
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 5.4e-115 418.3 311 68.5
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 9.2e-115 417.5 314 65.9
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 1.2e-114 417.2 325 66.2
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 1.2e-114 417.2 307 67.8
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 2.7e-114 416.0 307 67.4
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 4.5e-114 415.2 318 66.7
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 1.7e-113 413.3 311 64.6
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 2.9e-113 412.5 392 57.1
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 3.8e-113 412.1 273 74.7
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 5.0e-113 411.8 309 67.0
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 8.6e-113 411.0 317 65.9
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 8.6e-113 411.0 325 66.2
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 1.1e-112 410.6 308 66.6
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 1.1e-112 410.6 343 62.7
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 2.5e-112 409.5 270 74.4
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 2.5e-112 409.5 321 62.6
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 9.5e-112 407.5 310 66.1
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 1.6e-111 406.8 309 65.7
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 2.8e-111 406.0 292 69.5
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 2.8e-111 406.0 310 66.5
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 4.7e-111 405.2 331 62.5
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 6.1e-111 404.8 305 67.5
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 8.0e-111 404.4 320 65.6
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 1.8e-110 403.3 322 64.3
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 4.0e-110 402.1 309 65.7
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 5.2e-110 401.7 274 71.2
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 8.9e-110 401.0 310 64.8
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 8.9e-110 401.0 313 67.1
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 2.6e-109 399.4 310 64.5
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 3.4e-109 399.1 310 64.8
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 5.7e-109 398.3 334 61.4
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 1.3e-108 397.1 272 73.5
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.9e-108 395.2 325 63.4
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 1.4e-107 393.7 274 70.8
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 4.1e-107 392.1 292 68.5
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 7.0e-107 391.3 367 57.5
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 9.2e-107 391.0 274 69.7
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 3.0e-105 386.0 356 56.5
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 3.9e-105 385.6 283 68.6
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 3.3e-104 382.5 304 62.2
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 6.2e-103 378.3 313 60.7
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 3.1e-102 375.9 324 59.6
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 2.6e-101 372.9 267 70.0
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.3e-100 370.5 306 63.1
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 4.9e-100 368.6 307 61.2
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 3.9e-97 359.0 310 58.4
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 8.6e-97 357.8 333 56.8
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 1.9e-96 356.7 307 60.6
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 1.2e-95 354.0 234 71.8
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 2.8e-95 352.8 234 72.2
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 4.0e-94 349.0 313 59.1
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 1.3e-92 344.0 316 59.2
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 1.3e-92 344.0 310 55.5
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 1.1e-91 340.9 311 56.6
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.7e-89 333.6 324 55.6
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.3e-84 317.4 324 53.4
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 3.2e-83 312.8 225 70.2
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 9.2e-83 311.2 233 65.7
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 2.4e-78 296.6 457 42.0
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.1e-75 287.7 307 53.4
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 4.2e-75 285.8 310 50.0
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 2.7e-74 283.1 201 71.1
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 1.0e-65 254.6 172 74.4
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.1e-62 244.6 221 59.7
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 1.1e-62 244.6 182 68.1
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 1.5e-61 240.7 185 65.9
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.5e-61 240.7 267 53.2
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 9.9e-61 238.0 162 71.0
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 1.1e-59 234.6 344 40.7
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 7.1e-59 231.9 214 58.4
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 4.6e-58 229.2 318 42.1
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 6.0e-58 228.8 181 65.7
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 1.0e-57 228.0 172 67.4
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 1.8e-57 227.3 148 78.4
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 1.1e-56 224.6 221 54.3
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 4.8e-55 219.2 172 66.3
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 5.3e-54 215.7 203 51.7
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 2.6e-53 213.4 249 49.4
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 5.8e-53 212.2 285 43.2
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 1.1e-51 208.0 182 62.1
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 5.1e-49 199.1 138 72.5
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 5.1e-49 199.1 218 50.5
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 2.8e-47 193.4 137 69.3
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.4e-46 190.3 195 53.3
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 4.1e-46 189.5 132 70.5
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 4.2e-43 179.5 333 39.0
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 7.9e-42 175.3 121 68.6
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 3.0e-41 173.3 117 70.1
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 7.4e-40 168.7 148 61.5
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 6.9e-38 162.2 170 46.5
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 8.5e-36 155.2 182 49.5
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 5.7e-32 142.5 143 55.2
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 3.7e-31 139.8 106 68.9
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 3.8e-28 129.8 113 61.1
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 3.6e-26 123.2 116 57.8
Aqoxy480s002 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 1.1e-24 118.2 129 48.8
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 5.5e-19 99.4 56 80.4
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 3.0e-17 93.6 79 62.0
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 8.8e-17 92.0 79 57.0
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 1.3e-15 88.2 79 55.7
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 5.3e-14 82.8 93 46.2
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 2.2e-12 77.4 97 46.4
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 5.5e-11 72.8 44 77.3
QL10p009819 Quercus lobata HOM05D003898 ORTHO05D004642 9.4e-11 72.0 61 57.4
QL08p011560 Quercus lobata HOM05D003898 ORTHO05D004642 1.4e-09 68.2 61 55.7
Atru.chr5.2810 Acer truncatum HOM05D003898 ORTHO05D004642 4.1e-06 56.6 56 51.8
arahy.Tifrunner.gnm1.ann1.YUT84C Arachis hypogaea HOM05D003898 ORTHO05D004642 5.4e-06 56.2 40 67.5


User provided reference genes

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