Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1250 Punica granatum HOM05D006934 ORTHO05D008743 0.0e+00 1081.2 516 100.0
Dinv11656 Davidia involucrata HOM05D006934 ORTHO05D008743 3.3e-236 821.6 510 76.5
Eucgr.C02612 Eucalyptus grandis HOM05D006934 ORTHO05D008743 3.1e-234 815.1 510 77.5
Hma1.2p1_0706F.1_g207020 Hydrangea macrophylla HOM05D006934 ORTHO05D008743 3.1e-234 815.1 515 75.5
CSS0041678 Camellia sinensis var. sinensis HOM05D006934 ORTHO05D008743 5.9e-233 810.8 520 74.6
CSS0048576 Camellia sinensis var. sinensis HOM05D006934 ORTHO05D008743 5.9e-233 810.8 520 74.6
Cpa.g.sc127.37 Carica papaya HOM05D006934 ORTHO05D008743 1.1e-231 806.6 506 75.5
GSVIVG01035967001 Vitis vinifera HOM05D006934 ORTHO05D008743 1.9e-231 805.8 496 77.6
Eucgr.C02525 Eucalyptus grandis HOM05D006934 ORTHO05D008743 3.6e-230 801.6 509 75.8
QL02p018881 Quercus lobata HOM05D006934 ORTHO05D008743 2.3e-229 798.9 506 76.1
TAR626G1595 Trochodendron aralioides HOM05D006934 ORTHO05D008743 3.9e-229 798.1 510 75.3
Eucgr.C02611 Eucalyptus grandis HOM05D006934 ORTHO05D008743 8.8e-229 797.0 509 75.6
Haze_21418 Corylus avellana HOM05D006934 ORTHO05D008743 2.0e-228 795.8 508 74.6
Rhsim02G0213000 Rhododendron simsii HOM05D006934 ORTHO05D008743 3.3e-228 795.0 516 73.3
Prupe.1G393700 Prunus persica HOM05D006934 ORTHO05D008743 2.2e-227 792.3 506 75.5
Thecc.09G015800 Theobroma cacao HOM05D006934 ORTHO05D008743 3.7e-227 791.6 509 74.7
COL.COLO4_18949 Corchorus olitorius HOM05D006934 ORTHO05D008743 7.0e-226 787.3 507 74.6
Manes.03G008700 Manihot esculenta HOM05D006934 ORTHO05D008743 1.2e-225 786.6 507 74.8
Potri.018G018700 Populus trichocarpa HOM05D006934 ORTHO05D008743 1.6e-225 786.2 503 74.8
Sabra18G0021400 Salix brachista HOM05D006934 ORTHO05D008743 1.6e-225 786.2 509 74.9
Cfa013059 Carpinus fangiana HOM05D006934 ORTHO05D008743 3.5e-225 785.0 495 75.6
Actinidia10522 Actinidia chinensis HOM05D006934 ORTHO05D008743 5.9e-225 784.3 521 72.9
Atru.chr7.2565 Acer truncatum HOM05D006934 ORTHO05D008743 1.0e-224 783.5 513 72.9
TWI34G0497 Tripterygium wilfordii HOM05D006934 ORTHO05D008743 1.0e-224 783.5 493 75.9
Duzib168G1051 Durio zibethinus HOM05D006934 ORTHO05D008743 1.3e-224 783.1 512 73.6
MD15G1040400 Malus domestica HOM05D006934 ORTHO05D008743 8.5e-224 780.4 502 75.3
Cc08_g06990 Coffea canephora HOM05D006934 ORTHO05D008743 1.1e-223 780.0 489 74.4
RcHm_v2.0_Chr6g0299421 Rosa chinensis HOM05D006934 ORTHO05D008743 2.5e-223 778.9 493 74.8
HanXRQChr06g0176741 Helianthus annuus HOM05D006934 ORTHO05D008743 3.2e-223 778.5 509 73.1
Aqoxy5G03587 Aquilegia oxysepala HOM05D006934 ORTHO05D008743 1.6e-222 776.2 493 73.6
CANSAT25G0127 Cannabis sativa HOM05D006934 ORTHO05D008743 3.6e-222 775.0 514 72.0
Ciclev10008002m.g Citrus clementina HOM05D006934 ORTHO05D008743 2.3e-221 772.3 512 71.9
Solyc08g068580.4 Solanum lycopersicum HOM05D006934 ORTHO05D008743 3.0e-221 771.9 488 74.6
Eucgr.C02526 Eucalyptus grandis HOM05D006934 ORTHO05D008743 4.0e-221 771.5 480 77.3
FvH4_2g41120 Fragaria vesca HOM05D006934 ORTHO05D008743 5.2e-221 771.2 493 74.6
Gorai.001G038100 Gossypium raimondii HOM05D006934 ORTHO05D008743 6.7e-221 770.8 509 72.5
Sopen08g022340 Solanum pennellii HOM05D006934 ORTHO05D008743 1.2e-220 770.0 488 74.6
AUR62032410 Chenopodium quinoa HOM05D006934 ORTHO05D008743 2.0e-220 769.2 511 71.6
Lsat_1_v5_gn_8_82201 Lactuca sativa HOM05D006934 ORTHO05D008743 3.3e-220 768.5 512 71.1
CAN.G21.49 Capsicum annuum HOM05D006934 ORTHO05D008743 4.4e-220 768.1 490 74.5
Nitab4.5_0006202g0030 Nicotiana tabacum HOM05D006934 ORTHO05D008743 4.4e-220 768.1 513 71.9
Lalb_Chr23g0268221 Lupinus albus HOM05D006934 ORTHO05D008743 1.3e-219 766.5 482 73.4
EL10Ac2g02505 Beta vulgaris HOM05D006934 ORTHO05D008743 1.7e-219 766.1 515 72.2
ECA236G4849 Erigeron canadensis HOM05D006934 ORTHO05D008743 2.2e-219 765.8 506 71.7
Gohir.D07G036200 Gossypium hirsutum HOM05D006934 ORTHO05D008743 2.8e-219 765.4 509 72.1
FAN27G3133 Fragaria x ananassa HOM05D006934 ORTHO05D008743 2.4e-218 762.3 517 71.4
MSTRG.25834 Avicennia marina HOM05D006934 ORTHO05D008743 5.3e-218 761.1 490 74.1
AUR62024810 Chenopodium quinoa HOM05D006934 ORTHO05D008743 7.0e-218 760.8 511 70.8
MBI15_g19327_MAGBIO Magnolia biondii HOM05D006934 ORTHO05D008743 2.2e-216 755.7 484 74.0
vmacro11241 Vaccinium macrocarpon HOM05D006934 ORTHO05D008743 5.0e-216 754.6 545 68.4
CDE02G1998 Ceratophyllum demersum HOM05D006934 ORTHO05D008743 1.5e-215 753.1 489 71.2
Gorai.010G118800 Gossypium raimondii HOM05D006934 ORTHO05D008743 9.4e-215 750.4 509 70.1
Migut.A00351 Erythranthe guttata HOM05D006934 ORTHO05D008743 2.7e-214 748.8 494 71.9
ATR0739G024 Amborella trichopoda HOM05D006934 ORTHO05D008743 3.6e-214 748.4 503 70.2
Lj1g0027414 Lotus japonicus HOM05D006934 ORTHO05D008743 6.1e-214 747.7 501 71.5
Gohir.D06G103800 Gossypium hirsutum HOM05D006934 ORTHO05D008743 1.0e-213 746.9 509 69.9
Medtr3g105980 Medicago truncatula HOM05D006934 ORTHO05D008743 1.4e-213 746.5 508 70.9
Phvul.009G087000 Phaseolus vulgaris HOM05D006934 ORTHO05D008743 1.8e-213 746.1 507 69.0
Ca_15778_v3 Cicer arietinum L. HOM05D006934 ORTHO05D008743 8.8e-213 743.8 505 70.1
Psat5g033000 Pisum sativum HOM05D006934 ORTHO05D008743 1.5e-212 743.0 508 69.9
Lj7C734G21 Lonicera japonica HOM05D006934 ORTHO05D008743 1.7e-211 739.6 457 76.8
TPR.G1832 Trifolium pratense HOM05D006934 ORTHO05D008743 2.2e-211 739.2 514 68.7
VMungo1309G2247 Vigna mungo HOM05D006934 ORTHO05D008743 2.8e-211 738.8 497 70.4
PGSC0003DMG400029048 Solanum tuberosum HOM05D006934 ORTHO05D008743 8.3e-211 737.3 476 73.5
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 5.4e-210 734.6 483 72.0
arahy.Tifrunner.gnm1.ann1.XZ9AUI Arachis hypogaea HOM05D006934 ORTHO05D008743 9.1e-210 733.8 509 68.4
Glyma.06G061500 Glycine max HOM05D006934 ORTHO05D008743 3.8e-208 728.4 511 67.5
Hund02990 Selenicereus undatus HOM05D006934 ORTHO05D008743 3.8e-208 728.4 509 69.0
Glyma.04G060900 Glycine max HOM05D006934 ORTHO05D008743 2.5e-207 725.7 492 69.5
Os06g0649900 Oryza sativa ssp. japonica HOM05D006934 ORTHO05D008743 5.5e-207 724.5 488 68.4
BcaNung03200 Brassica carinata HOM05D006934 ORTHO05D008743 1.2e-206 723.4 498 70.3
CiPaw.07G230200 Carya illinoinensis HOM05D006934 ORTHO05D008743 1.2e-206 723.4 466 74.2
PSO017G3817 Papaver somniferum HOM05D006934 ORTHO05D008743 2.8e-206 722.2 481 69.9
Sp2g22420 Schrenkiella parvula HOM05D006934 ORTHO05D008743 8.0e-206 720.7 487 70.8
HPP92_004696 Vanilla planifolia HOM05D006934 ORTHO05D008743 2.3e-205 719.2 489 69.5
BraA06t26511Z Brassica rapa HOM05D006934 ORTHO05D008743 2.6e-204 715.7 493 70.4
Nitab4.5_0000406g0060 Nicotiana tabacum HOM05D006934 ORTHO05D008743 5.7e-204 714.5 463 73.4
PSO170G6733 Papaver somniferum HOM05D006934 ORTHO05D008743 5.7e-204 714.5 481 69.2
THA.LOC104799020 Tarenaya hassleriana HOM05D006934 ORTHO05D008743 8.3e-203 710.7 527 67.2
BcaNung02296 Brassica carinata HOM05D006934 ORTHO05D008743 2.4e-202 709.1 485 69.7
C07p42720 Brassica napus HOM05D006934 ORTHO05D008743 2.4e-202 709.1 485 69.9
BolC7t44802H Brassica oleracea HOM05D006934 ORTHO05D008743 2.4e-202 709.1 485 69.7
Sed0006653 Sechium edule HOM05D006934 ORTHO05D008743 1.2e-201 706.8 489 67.7
AL6G36750 Arabidopsis lyrata HOM05D006934 ORTHO05D008743 2.0e-201 706.1 477 71.3
Ah.12g060980 Amaranthus hybridus HOM05D006934 ORTHO05D008743 2.3e-200 702.6 462 72.7
Aqoxy2G03820 Aquilegia oxysepala HOM05D006934 ORTHO05D008743 2.9e-200 702.2 488 67.6
SEGI_09290 Sequoiadendron giganteum HOM05D006934 ORTHO05D008743 8.6e-200 700.7 494 67.4
Aa31LG11G4330 Aethionema arabicum HOM05D006934 ORTHO05D008743 4.3e-199 698.4 498 68.7
CsaV3_4G036540 Cucumis sativus L. HOM05D006934 ORTHO05D008743 7.3e-199 697.6 500 67.0
MELO3C016958.2 Cucumis melo HOM05D006934 ORTHO05D008743 8.0e-198 694.1 506 66.4
A06p35860 Brassica napus HOM05D006934 ORTHO05D008743 2.6e-196 689.1 540 64.4
ClCG05G016280 Citrullus lanatus HOM05D006934 ORTHO05D008743 4.9e-195 684.9 520 64.8
Nn2g12390 Nelumbo nucifera HOM05D006934 ORTHO05D008743 9.2e-194 680.6 514 67.1
BcaNung06716 Brassica carinata HOM05D006934 ORTHO05D008743 4.0e-189 665.2 485 67.2
Pp3c3_35450 Physcomitrium patens HOM05D006934 ORTHO05D008743 5.6e-175 618.2 482 58.5
arahy.Tifrunner.gnm1.ann1.G1SIKM Arachis hypogaea HOM05D006934 ORTHO05D008743 7.6e-172 607.8 509 60.3
Thhalv10004366m.g Eutrema salsugineum HOM05D006934 ORTHO05D008743 5.3e-157 558.5 381 70.9
CARHR188390 Cardamine hirsuta HOM05D006934 ORTHO05D008743 1.1e-151 540.8 373 70.8
Peaxi162Scf00822g00212 Petunia axillaris HOM05D006934 ORTHO05D008743 6.4e-147 525.0 336 72.3
Sc09g0010640 Simmondsia chinensis HOM05D006934 ORTHO05D008743 8.7e-144 514.6 353 69.7
Nn8g39897 Nelumbo nucifera HOM05D006934 ORTHO05D008743 4.3e-135 485.7 334 67.1
Eucgr.C02635 Eucalyptus grandis HOM05D006934 ORTHO05D008743 5.0e-131 472.2 502 53.2
Gohir.A06G101800 Gossypium hirsutum HOM05D006934 ORTHO05D008743 1.7e-118 430.6 311 65.6
Gohir.A07G032950 Gossypium hirsutum HOM05D006934 ORTHO05D008743 2.0e-116 423.7 302 66.6
Zm00001eb275030 Zea mays HOM05D006934 ORTHO05D008743 2.0e-95 354.0 255 62.7
Zm00001eb334470 Zea mays HOM05D006934 ORTHO05D008743 2.6e-87 327.0 219 64.8
Gohir.A06G101702 Gossypium hirsutum HOM05D006934 ORTHO05D008743 3.6e-73 280.0 179 74.9
QL02p018870 Quercus lobata HOM05D006934 ORTHO05D008743 1.1e-69 268.5 185 67.6
SGA_v2.0_scaffold22G09909 Striga asiatica HOM05D006934 ORTHO05D008743 1.0e-59 235.3 150 76.0
Zm00001eb337170 Zea mays HOM05D006934 ORTHO05D008743 1.1e-58 231.9 148 67.6
Lsat_1_v5_gn_5_171641 Lactuca sativa HOM05D006934 ORTHO05D008743 3.2e-21 107.5 104 55.8
Cfa012861 Carpinus fangiana HOM05D006934 ORTHO05D008743 1.9e-13 81.6 53 66.0
SEGI_28803 Sequoiadendron giganteum HOM05D006934 ORTHO05D008743 2.5e-13 81.3 78 52.6
Lsat_1_v5_gn_2_108800 Lactuca sativa HOM05D006934 ORTHO05D003550 1.3e-09 68.9 79 44.3


User provided reference genes

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