Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 6.3e-131 470.7 226 100.0
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 8.7e-80 300.8 187 76.5
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 8.7e-80 300.8 185 76.8
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 1.1e-79 300.4 186 74.7
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 5.6e-79 298.1 184 74.5
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 2.1e-78 296.2 191 73.8
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 2.8e-78 295.8 175 82.3
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 2.8e-78 295.8 207 69.6
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 8.1e-78 294.3 184 75.5
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 8.1e-78 294.3 191 73.3
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 4.0e-77 292.0 184 74.5
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 6.9e-77 291.2 184 76.1
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 1.5e-76 290.0 186 73.1
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 2.0e-76 289.7 220 65.5
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 3.4e-76 288.9 186 74.2
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 5.8e-76 288.1 183 74.3
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 9.9e-76 287.3 184 72.3
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 1.3e-75 287.0 188 71.8
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 2.9e-75 285.8 189 73.5
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 3.8e-75 285.4 184 73.9
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 4.9e-75 285.0 184 75.5
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 6.4e-75 284.6 188 73.4
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 6.4e-75 284.6 191 71.2
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 1.1e-74 283.9 218 64.2
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 1.1e-74 283.9 186 72.6
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 1.1e-74 283.9 186 73.7
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 1.4e-74 283.5 188 70.7
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 1.9e-74 283.1 189 71.4
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 1.9e-74 283.1 220 65.9
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 2.4e-74 282.7 187 73.3
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 7.1e-74 281.2 187 73.3
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 7.1e-74 281.2 187 73.3
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 7.1e-74 281.2 188 70.7
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 7.1e-74 281.2 186 72.6
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 9.3e-74 280.8 184 73.4
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 1.6e-73 280.0 213 67.1
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 2.1e-73 279.6 194 69.6
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 2.1e-73 279.6 187 70.6
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 2.7e-73 279.3 183 72.7
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 3.5e-73 278.9 189 71.4
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 6.0e-73 278.1 188 70.2
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 7.9e-73 277.7 184 72.8
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 7.9e-73 277.7 184 75.0
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 7.9e-73 277.7 184 72.8
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 2.3e-72 276.2 209 66.0
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 2.3e-72 276.2 186 69.9
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 3.0e-72 275.8 189 68.8
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 3.9e-72 275.4 185 70.3
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 5.1e-72 275.0 190 71.1
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 8.7e-72 274.2 205 65.4
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 2.5e-71 272.7 188 70.7
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 3.3e-71 272.3 188 70.7
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 1.3e-70 270.4 184 71.7
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 2.8e-70 269.2 195 69.2
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 3.6e-70 268.9 185 71.9
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 1.1e-69 267.3 192 65.6
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 4.0e-69 265.4 184 67.4
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 2.0e-68 263.1 184 70.7
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 3.4e-68 262.3 195 65.1
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 3.4e-68 262.3 192 65.6
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 5.8e-68 261.5 192 65.6
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 5.8e-68 261.5 195 67.7
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 5.8e-68 261.5 178 70.8
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 5.8e-68 261.5 182 68.7
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 9.9e-68 260.8 197 61.9
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 1.3e-67 260.4 167 74.9
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 1.3e-67 260.4 189 64.6
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 1.7e-67 260.0 191 64.4
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 1.7e-67 260.0 191 64.4
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 2.9e-67 259.2 168 74.4
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 3.8e-67 258.8 182 68.7
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 4.9e-67 258.5 191 64.4
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 1.1e-66 257.3 184 70.7
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 5.5e-66 255.0 209 59.3
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 7.1e-66 254.6 189 64.0
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 1.6e-65 253.4 188 64.9
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 3.5e-65 252.3 182 64.8
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 6.0e-65 251.5 198 63.6
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 1.0e-64 250.8 219 56.6
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 1.3e-64 250.4 187 67.9
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 3.0e-64 249.2 190 60.5
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 3.9e-64 248.8 186 63.4
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 3.9e-64 248.8 190 62.6
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 3.9e-64 248.8 190 62.6
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 3.9e-64 248.8 168 72.0
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 6.7e-64 248.1 181 64.1
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 8.7e-64 247.7 196 59.2
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 8.7e-64 247.7 189 63.0
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 8.7e-64 247.7 205 61.0
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 2.5e-63 246.1 211 60.2
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 9.6e-63 244.2 199 63.3
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 1.3e-62 243.8 177 67.8
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 8.1e-62 241.1 165 70.9
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.8e-61 240.0 192 60.4
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 2.4e-61 239.6 187 61.5
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 9.0e-61 237.7 183 60.1
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 2.0e-60 236.5 191 58.1
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 3.4e-60 235.7 170 68.2
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 3.4e-60 235.7 188 57.4
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 5.8e-60 235.0 187 59.4
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 3.8e-59 232.3 204 53.9
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 2.5e-58 229.6 192 56.2
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 6.0e-57 224.9 171 64.9
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 6.7e-56 221.5 182 59.9
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 1.1e-55 220.7 141 76.6
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 1.1e-55 220.7 155 68.4
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 3.3e-55 219.2 170 62.4
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 2.1e-54 216.5 187 56.7
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 8.2e-54 214.5 163 62.6
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 2.0e-52 209.9 137 73.0
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 2.2e-51 206.5 137 73.7
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 6.5e-51 204.9 163 63.2
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 9.3e-50 201.1 200 53.0
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 1.2e-49 200.7 184 51.1
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.6e-49 198.7 172 56.4
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 6.1e-49 198.4 173 55.5
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 7.9e-49 198.0 170 56.5
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 7.9e-49 198.0 137 66.4
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.3e-46 190.7 156 59.0
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 6.9e-45 184.9 167 53.9
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 3.6e-41 172.6 116 69.8
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 4.6e-41 172.2 126 68.3
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 1.0e-40 171.0 218 43.6
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 3.0e-40 169.5 187 48.1
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 5.1e-40 168.7 141 56.0
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 1.3e-38 164.1 186 49.5
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.3e-38 164.1 129 60.5
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 2.4e-37 159.8 184 45.1
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 2.6e-36 156.4 114 64.9
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.5e-36 155.6 172 47.1
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 6.1e-33 145.2 90 70.0
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 2.0e-28 130.2 74 78.4
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 2.7e-25 119.8 206 36.4
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 7.5e-23 111.7 91 54.9
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 2.7e-17 93.2 121 46.3
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 1.4e-13 80.9 48 77.1
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 7.7e-12 75.1 68 58.8
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 1.0e-11 74.7 45 73.3
CAN.G1302.2 Capsicum annuum HOM05D005240 ORTHO05D115732 3.8e-11 72.8 117 38.5
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 9.4e-10 68.2 47 63.8
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.7e-09 66.6 53 56.6
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 2.7e-09 66.6 47 61.7
SEGI_21412 Sequoiadendron giganteum HOM05D005240 ORTHO05D006471 3.4e-07 59.7 46 60.9


User provided reference genes

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