Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1795.8 876 100.0
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1328.9 871 73.8
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1322.0 871 73.7
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1322.0 877 72.6
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1320.8 872 71.7
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1312.4 871 72.9
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1308.9 872 71.7
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1303.9 877 71.6
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1295.8 872 71.1
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1294.6 872 70.9
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1290.4 873 69.4
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1286.2 883 70.1
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1285.4 872 70.4
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1283.9 870 70.1
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1279.2 872 70.5
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1279.2 875 70.6
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1279.2 879 70.9
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1279.2 870 70.3
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1277.3 870 69.4
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1275.8 876 69.4
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1273.5 876 69.1
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1271.9 872 70.1
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1270.0 867 70.4
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1266.9 876 69.4
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1260.0 873 69.6
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1259.2 872 69.5
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1258.8 871 69.1
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1258.0 873 70.3
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1257.7 876 68.8
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1257.7 876 68.6
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1256.9 876 68.8
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1256.5 872 69.4
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1256.5 872 69.5
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1256.5 876 68.7
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1254.6 876 68.7
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1253.8 876 69.5
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1253.4 868 68.5
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1252.3 870 68.6
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1251.1 871 69.3
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1250.7 871 69.7
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1247.6 870 68.4
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1242.3 877 67.8
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1238.8 871 68.9
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1238.0 878 68.7
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1236.9 875 66.7
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1235.7 872 67.5
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1235.3 871 68.0
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1234.9 871 67.5
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1234.6 870 68.3
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1233.4 870 68.3
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1233.0 871 67.7
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1232.2 870 67.7
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1229.9 871 67.6
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1229.2 872 67.8
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1228.0 892 66.6
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1228.0 871 68.4
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1226.5 871 67.9
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1224.9 879 67.3
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1224.5 875 67.1
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1223.8 863 67.6
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1223.4 871 66.8
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1222.6 879 67.7
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1222.6 871 67.7
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1220.7 878 67.9
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1219.1 890 66.2
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1217.6 870 67.7
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1214.1 872 67.5
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1213.7 882 66.1
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1213.4 872 66.4
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1211.4 872 67.9
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1207.2 871 66.2
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1205.7 876 66.6
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1203.0 872 66.1
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1203.0 872 65.9
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1202.2 873 66.2
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1201.4 877 66.2
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1201.4 872 65.9
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1200.7 872 66.3
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1200.7 875 66.5
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1199.1 871 65.8
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1198.3 871 65.8
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1197.6 872 65.8
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1195.3 873 66.1
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1194.9 890 64.7
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1194.1 873 66.2
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1186.4 870 66.2
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 0.0e+00 1185.6 870 65.7
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1179.9 828 68.4
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 0.0e+00 1144.4 877 62.5
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 0.0e+00 1123.6 760 71.7
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 0.0e+00 1103.6 861 61.0
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 3.6e-307 1058.1 864 61.0
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 8.8e-306 1053.5 693 71.0
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 2.7e-302 1042.0 647 75.1
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 1.7e-301 1039.3 870 58.0
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 3.3e-292 1008.4 694 68.9
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 9.5e-292 1006.9 868 55.6
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 8.0e-291 1003.8 875 58.1
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 5.8e-281 971.1 878 54.7
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 4.6e-278 961.4 866 54.3
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 7.6e-273 944.1 874 51.8
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 5.5e-207 725.3 769 47.5
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 9.5e-159 565.1 391 69.1
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 8.4e-155 552.0 487 56.7
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 5.8e-140 502.7 461 54.4
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 2.2e-115 421.0 367 58.3
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 4.7e-89 333.6 308 55.8
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 2.0e-68 265.0 204 63.2
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 2.3e-67 261.5 168 72.0
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 1.1e-50 206.1 174 59.2
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 4.1e-45 187.6 176 54.0
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 7.3e-42 176.8 199 49.7
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 4.9e-38 164.1 216 42.1
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 9.9e-31 139.8 149 47.0
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 7.8e-28 130.2 85 69.4
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 7.3e-26 123.6 119 55.5
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 8.1e-25 120.2 87 66.7
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 9.9e-23 113.2 69 75.4
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 1.7e-22 112.5 90 57.8
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 1.3e-19 102.8 80 58.8
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 2.5e-18 98.6 111 48.6
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 5.8e-15 87.4 273 26.4
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 4.9e-14 84.3 322 24.2
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 3.2e-13 81.6 312 24.7
SHI02338 Sapria himalayana HOM05D006378 ORTHO05D007959 9.3e-13 80.1 68 54.4
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 3.5e-12 78.2 313 25.2
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 7.9e-12 77.0 317 24.3
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 1.1e-10 73.2 251 23.9
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 1.9e-10 72.4 320 25.6
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.9e-10 72.4 227 24.7
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 4.3e-10 71.2 290 23.8
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 2.1e-09 68.9 312 25.3
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 2.1e-09 68.9 312 24.4
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 3.7e-09 68.2 298 25.2
PRCOL_00001343 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 4.8e-09 67.8 225 29.8
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 4.0e-08 64.7 32 81.2
CBR_g51027 Chara braunii HOM05D008676 ORTHO05D010936 5.3e-08 64.3 222 27.9
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 5.3e-08 64.3 96 40.6
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 5.3e-08 64.3 156 26.9
Cre02.g117350 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.0e-07 62.4 213 21.6
SMO348G0088 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 2.6e-07 62.0 296 24.0
Cre02.g146650 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 4.5e-07 61.2 299 24.4
Pp3c6_25370 Physcomitrium patens HOM05D008676 ORTHO05D010936 5.8e-07 60.8 304 25.7
ATR0511G001 Amborella trichopoda HOM05D006378 ORTHO05D007959 1.7e-06 59.3 86 44.2
Cre03.g145447 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.2e-06 58.9 203 25.6
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 3.8e-06 58.2 213 23.5
AagrBONN_evm.TU.Sc2ySwM_369.291 Anthoceros agrestis HOM05D008676 ORTHO05D010936 4.9e-06 57.8 176 25.0
CBR_g36370 Chara braunii HOM05D008676 ORTHO05D010936 4.9e-06 57.8 87 40.2


User provided reference genes

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