Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1212 Punica granatum HOM05D004446 ORTHO05D005346 3.6e-79 298.1 144 100.0
Eucgr.H02865 Eucalyptus grandis HOM05D004446 ORTHO05D005346 1.4e-75 286.2 144 94.4
TPR.G23640 Trifolium pratense HOM05D004446 ORTHO05D005346 9.1e-75 283.5 144 94.4
Psat6g109720 Pisum sativum HOM05D004446 ORTHO05D005346 1.2e-74 283.1 144 94.4
Glyma.20G079400 Glycine max HOM05D004446 ORTHO05D005346 2.0e-74 282.3 144 93.8
Medtr1g046380 Medicago truncatula HOM05D004446 ORTHO05D005346 7.7e-74 280.4 144 93.1
arahy.Tifrunner.gnm1.ann1.VC13RQ Arachis hypogaea HOM05D004446 ORTHO05D005346 2.2e-73 278.9 144 91.7
Lj6g0002383 Lotus japonicus HOM05D004446 ORTHO05D005346 2.9e-73 278.5 144 91.7
Glyma.10G128100 Glycine max HOM05D004446 ORTHO05D005346 3.8e-73 278.1 144 92.4
Lalb_Chr01g0011251 Lupinus albus HOM05D004446 ORTHO05D005346 6.5e-73 277.3 144 88.9
MSTRG.24643 Avicennia marina HOM05D004446 ORTHO05D005346 8.5e-73 276.9 144 91.0
Ca_11789_v3 Cicer arietinum L. HOM05D004446 ORTHO05D005346 8.5e-73 276.9 144 91.0
Gohir.A10G120100 Gossypium hirsutum HOM05D004446 ORTHO05D005346 8.5e-73 276.9 144 91.7
Gohir.D10G146300 Gossypium hirsutum HOM05D004446 ORTHO05D005346 8.5e-73 276.9 144 91.7
Gorai.011G163400 Gossypium raimondii HOM05D004446 ORTHO05D005346 8.5e-73 276.9 144 91.7
Thecc.04G215500 Theobroma cacao HOM05D004446 ORTHO05D005346 8.5e-73 276.9 144 91.7
Atru.chr4.1819 Acer truncatum HOM05D004446 ORTHO05D005346 1.1e-72 276.6 144 90.3
AL4G28840 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 1.5e-72 276.2 144 91.7
Cpa.g.sc59.66 Carica papaya HOM05D004446 ORTHO05D005346 1.5e-72 276.2 144 91.0
COL.COLO4_05729 Corchorus olitorius HOM05D004446 ORTHO05D005346 1.5e-72 276.2 144 91.0
Gohir.D10G146200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 1.9e-72 275.8 144 90.3
Lalb_Chr03g0036811 Lupinus albus HOM05D004446 ORTHO05D005346 1.9e-72 275.8 144 89.6
BcaC07g36901 Brassica carinata HOM05D004446 ORTHO05D005346 3.2e-72 275.0 144 91.0
A08p36850 Brassica napus HOM05D004446 ORTHO05D005346 3.2e-72 275.0 144 91.0
A09p67770 Brassica napus HOM05D004446 ORTHO05D005346 3.2e-72 275.0 144 91.0
A10p03060 Brassica napus HOM05D004446 ORTHO05D005346 3.2e-72 275.0 144 91.0
C05p02820 Brassica napus HOM05D004446 ORTHO05D005346 3.2e-72 275.0 144 91.0
BolC5t29065H Brassica oleracea HOM05D004446 ORTHO05D005346 3.2e-72 275.0 144 91.0
BolC8t46930H Brassica oleracea HOM05D004446 ORTHO05D005346 3.2e-72 275.0 144 91.0
BraA08t35586Z Brassica rapa HOM05D004446 ORTHO05D005346 3.2e-72 275.0 144 91.0
BraA09t42108Z Brassica rapa HOM05D004446 ORTHO05D005346 3.2e-72 275.0 144 91.0
BraA10t42579Z Brassica rapa HOM05D004446 ORTHO05D005346 3.2e-72 275.0 144 91.0
Ciclev10006172m.g Citrus clementina HOM05D004446 ORTHO05D005346 3.2e-72 275.0 144 91.0
Thhalv10017386m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 3.2e-72 275.0 144 91.0
Manes.03G155100 Manihot esculenta HOM05D004446 ORTHO05D005346 3.2e-72 275.0 144 90.3
Sp1g03460 Schrenkiella parvula HOM05D004446 ORTHO05D005346 3.2e-72 275.0 144 91.0
CiPaw.02G127900 Carya illinoinensis HOM05D004446 ORTHO05D005346 4.2e-72 274.6 144 89.6
Thhalv10009042m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 4.2e-72 274.6 144 91.0
Gohir.A10G120200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 4.2e-72 274.6 144 89.6
Phvul.007G238600 Phaseolus vulgaris HOM05D004446 ORTHO05D005346 4.2e-72 274.6 144 89.6
Potri.001G054500 Populus trichocarpa HOM05D004446 ORTHO05D005346 4.2e-72 274.6 144 91.0
Gorai.011G163300 Gossypium raimondii HOM05D004446 ORTHO05D005346 5.5e-72 274.2 144 89.6
SGA_v2.0_scaffold155G37240 Striga asiatica HOM05D004446 ORTHO05D005346 5.5e-72 274.2 144 90.3
BcaB03g13480 Brassica carinata HOM05D004446 ORTHO05D005346 7.2e-72 273.9 144 90.3
CANSAT78G0709 Cannabis sativa HOM05D004446 ORTHO05D005346 7.2e-72 273.9 144 90.3
arahy.Tifrunner.gnm1.ann1.Q5T5LU Arachis hypogaea HOM05D004446 ORTHO05D005346 9.4e-72 273.5 142 90.8
CARHR127230 Cardamine hirsuta HOM05D004446 ORTHO05D005346 9.4e-72 273.5 144 90.3
AT1G04630 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 1.2e-71 273.1 144 90.3
Carub.0001s0386 Capsella rubella HOM05D004446 ORTHO05D005346 1.2e-71 273.1 144 90.3
Carub.0004s1468 Capsella rubella HOM05D004446 ORTHO05D005346 1.2e-71 273.1 144 91.0
ClCG06G007390 Citrullus lanatus HOM05D004446 ORTHO05D005346 1.2e-71 273.1 144 89.6
CsaV3_2G012290 Cucumis sativus L. HOM05D004446 ORTHO05D005346 1.2e-71 273.1 144 89.6
Potri.003G173800 Populus trichocarpa HOM05D004446 ORTHO05D005346 1.2e-71 273.1 144 89.6
AL1G14310 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 1.6e-71 272.7 144 90.3
Sp4g15520 Schrenkiella parvula HOM05D004446 ORTHO05D005346 2.1e-71 272.3 144 89.6
VMungo0720G0669 Vigna mungo HOM05D004446 ORTHO05D005346 2.1e-71 272.3 144 89.6
AT2G33220 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 2.7e-71 271.9 142 91.5
RcHm_v2.0_Chr4g0396561 Rosa chinensis HOM05D004446 ORTHO05D005346 2.7e-71 271.9 144 88.9
Aa31LG5G4110 Aethionema arabicum HOM05D004446 ORTHO05D005346 3.6e-71 271.6 144 88.9
C08p01220 Brassica napus HOM05D004446 ORTHO05D005346 3.6e-71 271.6 144 90.3
CARHR003980 Cardamine hirsuta HOM05D004446 ORTHO05D005346 3.6e-71 271.6 144 89.6
Duzib212G0284 Durio zibethinus HOM05D004446 ORTHO05D005346 3.6e-71 271.6 144 88.9
MD13G1228700 Malus domestica HOM05D004446 ORTHO05D005346 3.6e-71 271.6 144 88.2
CiPaw.01G206200 Carya illinoinensis HOM05D004446 ORTHO05D005346 4.7e-71 271.2 144 88.9
HanXRQChr06g0183261 Helianthus annuus HOM05D004446 ORTHO05D005346 4.7e-71 271.2 144 88.9
MELO3C023063.2 Cucumis melo HOM05D004446 ORTHO05D005346 6.1e-71 270.8 144 88.9
Sed0017441 Sechium edule HOM05D004446 ORTHO05D005346 8.0e-71 270.4 144 87.5
Aa31LG1G20240 Aethionema arabicum HOM05D004446 ORTHO05D005346 1.4e-70 269.6 144 88.2
Manes.15G048500 Manihot esculenta HOM05D004446 ORTHO05D005346 1.8e-70 269.2 144 88.9
Nitab4.5_0000451g0180 Nicotiana tabacum HOM05D004446 ORTHO05D005346 1.8e-70 269.2 144 89.6
Nitab4.5_0018759g0010 Nicotiana tabacum HOM05D004446 ORTHO05D005346 1.8e-70 269.2 144 89.6
TWI73G1246 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 1.8e-70 269.2 144 88.2
DCAR_027363 Daucus carota HOM05D004446 ORTHO05D005346 2.3e-70 268.9 144 88.2
Peaxi162Scf00047g01619 Petunia axillaris HOM05D004446 ORTHO05D005346 2.3e-70 268.9 144 89.6
SalBow2G1310 Salvia bowleyana HOM05D004446 ORTHO05D005346 2.3e-70 268.9 144 87.5
Solyc09g091170.4 Solanum lycopersicum HOM05D004446 ORTHO05D005346 2.3e-70 268.9 144 89.6
Sopen09g034140 Solanum pennellii HOM05D004446 ORTHO05D005346 2.3e-70 268.9 144 89.6
FvH4_4g05410 Fragaria vesca HOM05D004446 ORTHO05D005346 3.0e-70 268.5 144 87.5
FAN07G2016 Fragaria x ananassa HOM05D004446 ORTHO05D005346 3.0e-70 268.5 144 87.5
FAN12G2493 Fragaria x ananassa HOM05D004446 ORTHO05D005346 3.0e-70 268.5 144 87.5
FAN12G4338 Fragaria x ananassa HOM05D004446 ORTHO05D005346 3.0e-70 268.5 144 87.5
MD16G1234000 Malus domestica HOM05D004446 ORTHO05D005346 3.0e-70 268.5 144 86.8
HanXRQChr14g0434271 Helianthus annuus HOM05D004446 ORTHO05D005346 4.0e-70 268.1 144 87.5
Actinidia35938 Actinidia chinensis HOM05D004446 ORTHO05D005346 6.8e-70 267.3 144 86.1
Prupe.1G056200 Prunus persica HOM05D004446 ORTHO05D005346 8.8e-70 266.9 144 86.8
vmacro00521 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 8.8e-70 266.9 144 86.8
ECA238G1521 Erigeron canadensis HOM05D004446 ORTHO05D005346 1.2e-69 266.5 144 86.8
TWI09G0335 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 1.2e-69 266.5 144 87.5
Aqoxy3G02680 Aquilegia oxysepala HOM05D004446 ORTHO05D005346 1.5e-69 266.2 144 88.2
CDE04G3627 Ceratophyllum demersum HOM05D004446 ORTHO05D005346 2.0e-69 265.8 144 87.5
Nn2g14612 Nelumbo nucifera HOM05D004446 ORTHO05D005346 2.0e-69 265.8 144 87.5
PGSC0003DMG400011587 Solanum tuberosum HOM05D004446 ORTHO05D005346 2.0e-69 265.8 144 88.9
TAR362G0142 Trochodendron aralioides HOM05D004446 ORTHO05D005346 2.6e-69 265.4 144 86.8
Hund19262 Selenicereus undatus HOM05D004446 ORTHO05D005346 3.4e-69 265.0 144 85.4
Sc19g0005800 Simmondsia chinensis HOM05D004446 ORTHO05D005346 3.4e-69 265.0 144 87.5
THA.LOC104816014 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 3.4e-69 265.0 144 87.5
CSS0043422 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 4.4e-69 264.6 144 86.8
CSS0044163 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 4.4e-69 264.6 144 86.8
THA.LOC104826105 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 5.7e-69 264.2 144 87.5
Cc00_g09360 Coffea canephora HOM05D004446 ORTHO05D005346 7.5e-69 263.8 144 86.8
Nn5g27558 Nelumbo nucifera HOM05D004446 ORTHO05D005346 7.5e-69 263.8 144 86.1
TAR365G0553 Trochodendron aralioides HOM05D004446 ORTHO05D005346 1.3e-68 263.1 144 86.8
Lsat_1_v5_gn_2_41880 Lactuca sativa HOM05D004446 ORTHO05D005346 1.7e-68 262.7 143 86.0
AUR62035332 Chenopodium quinoa HOM05D004446 ORTHO05D005346 2.8e-68 261.9 144 85.4
TAR633G2153 Trochodendron aralioides HOM05D004446 ORTHO05D005346 2.8e-68 261.9 142 87.3
PSO782G0825 Papaver somniferum HOM05D004446 ORTHO05D005346 1.8e-67 259.2 144 85.4
EL10Ac3g06748 Beta vulgaris HOM05D004446 ORTHO05D005346 2.4e-67 258.8 144 84.7
QL06p022604 Quercus lobata HOM05D004446 ORTHO05D005346 2.4e-67 258.8 143 83.9
HPP92_008960 Vanilla planifolia HOM05D004446 ORTHO05D005346 3.1e-67 258.5 144 84.0
Rhsim09G0047000 Rhododendron simsii HOM05D004446 ORTHO05D005346 7.0e-67 257.3 151 82.1
RhsimUnG0181300 Rhododendron simsii HOM05D004446 ORTHO05D005346 7.0e-67 257.3 151 82.1
PSO063G0015 Papaver somniferum HOM05D004446 ORTHO05D005346 1.6e-66 256.1 144 84.7
Lsat_1_v5_gn_2_41141 Lactuca sativa HOM05D004446 ORTHO05D005346 2.0e-66 255.8 141 85.1
ATR0736G077 Amborella trichopoda HOM05D004446 ORTHO05D005346 5.9e-66 254.2 144 82.6
Zm00001eb008370 Zea mays HOM05D004446 ORTHO05D005346 5.9e-66 254.2 144 81.9
vmacro22557 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 3.8e-65 251.5 154 79.2
Dinv38297 Davidia involucrata HOM05D004446 ORTHO05D005346 6.5e-65 250.8 135 88.1
Migut.G00605 Erythranthe guttata HOM05D004446 ORTHO05D005346 8.6e-65 250.4 144 84.7
Zm00001eb401250 Zea mays HOM05D004446 ORTHO05D005346 1.9e-64 249.2 144 80.6
Hma1.2p1_2329F.1_g320020 Hydrangea macrophylla HOM05D004446 ORTHO05D005346 4.2e-64 248.1 175 71.4
AUR62035909 Chenopodium quinoa HOM05D004446 ORTHO05D005346 1.4e-62 243.0 135 85.2
Os03g0192400 Oryza sativa ssp. japonica HOM05D004446 ORTHO05D005346 1.7e-60 236.1 139 79.1
BcaC07g42166 Brassica carinata HOM05D004446 ORTHO05D005346 1.6e-58 229.6 144 79.9
Sabra03G0127300 Salix brachista HOM05D004446 ORTHO05D005346 6.6e-57 224.2 260 49.6
SEGI_11387 Sequoiadendron giganteum HOM05D004446 ORTHO05D005346 9.5e-56 220.3 144 70.1
Actinidia25089 Actinidia chinensis HOM05D004446 ORTHO05D005346 2.8e-55 218.8 177 62.7
BolC3t14561H Brassica oleracea HOM05D004446 ORTHO05D005346 4.4e-53 211.5 140 77.1
Ah.13g075110 Amaranthus hybridus HOM05D004446 ORTHO05D005346 5.8e-53 211.1 144 71.5
BolC8t52743H Brassica oleracea HOM05D004446 ORTHO05D005346 1.7e-52 209.5 117 88.9
Sabra01G0039000 Salix brachista HOM05D004446 ORTHO05D005346 2.9e-52 208.8 308 42.9
AagrBONN_evm.TU.Sc2ySwM_344.5082 Anthoceros agrestis HOM05D004446 ORTHO05D005346 6.6e-49 197.6 144 64.6
Pp3c5_4240 Physcomitrium patens HOM05D004446 ORTHO05D005346 3.6e-47 191.8 141 65.2
Pp3c16_2570 Physcomitrium patens HOM05D004446 ORTHO05D005346 3.1e-46 188.7 141 66.0
unitig_748.g8289 Utricularia gibba HOM05D002765 ORTHO05D003083 6.8e-46 187.6 142 66.9
CBR_g9031 Chara braunii HOM05D004446 ORTHO05D005346 1.3e-44 183.3 138 63.8
Mapoly0001s0090 Marchantia polymorpha HOM05D004446 ORTHO05D005346 1.3e-44 183.3 142 62.0
C08p52100 Brassica napus HOM05D004446 ORTHO05D005346 1.8e-38 162.9 93 82.8
Dinv27149 Davidia involucrata HOM05D004446 ORTHO05D005346 2.0e-37 159.5 82 90.2
GSVIVG01028486001 Vitis vinifera HOM05D004446 ORTHO05D005346 4.9e-36 154.8 84 85.7
MCO16G128 Micromonas commoda HOM05D004446 ORTHO05D005346 2.1e-34 149.4 142 52.1
Haze_11535 Corylus avellana HOM05D004446 ORTHO05D005346 3.0e-33 145.6 88 78.4
A03p18650 Brassica napus HOM05D004446 ORTHO05D005346 8.6e-33 144.1 73 90.4
BraA03t11124Z Brassica rapa HOM05D004446 ORTHO05D005346 8.6e-33 144.1 73 90.4
CAN.G1588.2 Capsicum annuum HOM05D004446 ORTHO05D005346 4.7e-31 138.3 75 85.3
Oeu008823.1 Olea europaea HOM05D004446 ORTHO05D005346 4.7e-31 138.3 72 88.9
RhsimUnG0181500 Rhododendron simsii HOM05D004446 ORTHO05D005346 1.8e-30 136.3 75 81.3
BcaC01g05851 Brassica carinata HOM05D004446 ORTHO05D005346 6.4e-28 127.9 66 90.9
SMO364G0175 Selaginella moellendorffii HOM05D004446 ORTHO05D005346 2.4e-27 125.9 143 46.2
Cre16.g664600 Chlamydomonas reinhardtii HOM05D004446 ORTHO05D005346 9.2e-27 124.0 141 46.1
Oeu008826.1 Olea europaea HOM05D004446 ORTHO05D005346 3.0e-25 119.0 64 87.5
Zm00001eb305890 Zea mays HOM05D004446 ORTHO05D005346 3.9e-25 118.6 97 60.8
MBI10_g44933_MAGBIO Magnolia biondii HOM05D004446 ORTHO05D005346 1.5e-24 116.7 63 85.7
MBI10_g35300_MAGBIO Magnolia biondii HOM05D004446 ORTHO05D005346 3.6e-23 112.1 156 45.5
Cc05_g03600 Coffea canephora HOM05D004446 ORTHO05D005346 2.4e-19 99.4 74 67.6
C03p21790 Brassica napus HOM05D004446 ORTHO05D005346 7.3e-16 87.8 46 91.3
SHI08306 Sapria himalayana HOM05D004446 ORTHO05D005346 4.8e-15 85.1 89 49.4
SHI22881 Sapria himalayana HOM05D004446 ORTHO05D005346 6.4e-12 74.7 54 68.5
PRCOL_00006069 Prasinoderma coloniale HOM05D004446 ORTHO05D005346 2.1e-10 69.7 99 38.4
CSS0009466 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.4e-06 57.0 30 76.7
unitig_32.g10861 Utricularia gibba HOM05D004446 ORTHO05D005346 3.1e-06 55.8 95 42.1


User provided reference genes

Program Settings