Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1205 Punica granatum HOM05D003689 ORTHO05D003950 4.8e-84 316.2 543 100.0
Manes.16G066100 Manihot esculenta HOM05D003689 ORTHO05D003950 8.0e-31 139.4 167 84.4
Ciclev10007728m.g Citrus clementina HOM05D003689 ORTHO05D003950 3.4e-29 134.0 167 83.2
Sabra18G0038000 Salix brachista HOM05D003689 ORTHO05D003950 1.7e-28 131.7 167 82.6
Thecc.09G039700 Theobroma cacao HOM05D003689 ORTHO05D003950 2.9e-28 131.0 167 76.6
TWI63G0545 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 2.9e-28 131.0 167 85.6
QL12p026389 Quercus lobata HOM05D003689 ORTHO05D003950 4.9e-28 130.2 167 77.8
Cc00_g17700 Coffea canephora HOM05D003689 ORTHO05D003950 2.4e-27 127.9 167 82.0
Cfa013343 Carpinus fangiana HOM05D003689 ORTHO05D003950 4.1e-27 127.1 167 81.4
Haze_21848 Corylus avellana HOM05D003689 ORTHO05D003950 4.1e-27 127.1 167 81.4
MD08G1118600 Malus domestica HOM05D003689 ORTHO05D003950 4.1e-27 127.1 167 80.2
DCAR_004497 Daucus carota HOM05D003689 ORTHO05D003950 7.0e-27 126.3 167 52.7
GSVIVG01035672001 Vitis vinifera HOM05D003689 ORTHO05D003950 2.7e-26 124.4 167 83.2
CSS0006196 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 3.0e-25 120.9 167 80.2
FAN20G2410 Fragaria x ananassa HOM05D003689 ORTHO05D003950 3.9e-25 120.6 167 83.2
FvH4_2g36130 Fragaria vesca HOM05D003689 ORTHO05D003950 5.0e-25 120.2 167 82.6
FAN15G3321 Fragaria x ananassa HOM05D003689 ORTHO05D003950 5.0e-25 120.2 167 83.2
TAR383G0867 Trochodendron aralioides HOM05D006226 ORTHO05D007738 8.6e-25 119.4 167 83.2
RcHm_v2.0_Chr6g0305741 Rosa chinensis HOM05D003689 ORTHO05D003950 1.5e-24 118.6 167 82.6
Eucgr.C02891 Eucalyptus grandis HOM05D003689 ORTHO05D003950 1.9e-24 118.2 167 77.2
FAN27G3406 Fragaria x ananassa HOM05D003689 ORTHO05D003950 2.5e-24 117.9 167 82.0
Hma1.2p1_0140F.1_g063530 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 4.3e-24 117.1 167 82.6
Prupe.1G452700 Prunus persica HOM05D003689 ORTHO05D003950 5.6e-24 116.7 165 78.8
TAR624G0802 Trochodendron aralioides HOM05D003689 ORTHO05D003950 9.5e-24 115.9 167 79.6
Nitab4.5_0000052g0100 Nicotiana tabacum HOM05D003689 ORTHO05D003950 1.6e-23 115.2 167 74.9
Potri.018G037200 Populus trichocarpa HOM05D003689 ORTHO05D003950 4.7e-23 113.6 167 76.6
Nitab4.5_0003338g0050 Nicotiana tabacum HOM05D003689 ORTHO05D003950 1.4e-22 112.1 167 72.5
Actinidia31220 Actinidia chinensis HOM05D003689 ORTHO05D003950 4.0e-22 110.5 169 73.4
PSO210G3978 Papaver somniferum HOM05D003689 ORTHO05D003950 5.2e-22 110.2 167 73.7
Haze_25759 Corylus avellana HOM05D003689 ORTHO05D003950 6.8e-22 109.8 167 79.0
Peaxi162Scf00231g00023 Petunia axillaris HOM05D003689 ORTHO05D003950 6.8e-22 109.8 166 79.5
ClCG11G014000 Citrullus lanatus HOM05D008234 ORTHO05D010422 1.2e-21 109.0 167 50.3
Hma1.2p1_3266F.1_g334670 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 1.2e-21 109.0 168 76.2
Cc06_g09790 Coffea canephora HOM05D003689 ORTHO05D003950 1.5e-21 108.6 167 74.3
PSO210G7239 Papaver somniferum HOM05D003689 ORTHO05D003950 2.6e-21 107.8 167 73.1
Hma1.2p1_1151F.1_g262016 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 4.4e-21 107.1 168 75.6
PGSC0003DMG400024327 Solanum tuberosum HOM05D003689 ORTHO05D003950 4.4e-21 107.1 166 75.9
CiPaw.07G207300 Carya illinoinensis HOM05D003689 ORTHO05D003950 5.8e-21 106.7 167 76.6
Nitab4.5_0000114g0090 Nicotiana tabacum HOM05D003689 ORTHO05D003950 5.8e-21 106.7 166 79.5
Nitab4.5_0004562g0020 Nicotiana tabacum HOM05D003689 ORTHO05D003950 5.8e-21 106.7 166 79.5
Sopen07g016320 Solanum pennellii HOM05D003689 ORTHO05D003950 5.8e-21 106.7 166 78.3
Dinv41614 Davidia involucrata HOM05D003689 ORTHO05D003950 1.3e-20 105.5 167 76.6
CAN.G238.2 Capsicum annuum HOM05D003689 ORTHO05D003950 1.7e-20 105.1 166 77.1
DCAR_012069 Daucus carota HOM05D001279 ORTHO05D001636 2.9e-20 104.4 166 74.1
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 2.9e-20 104.4 169 35.5
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 3.7e-20 104.0 169 35.5
ClCG06G008630 Citrullus lanatus HOM05D003689 ORTHO05D003950 4.9e-20 103.6 167 73.7
Gohir.A06G063300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 4.9e-20 103.6 168 74.4
Gorai.010G072200 Gossypium raimondii HOM05D003689 ORTHO05D003950 4.9e-20 103.6 168 73.2
AL6G37510 Arabidopsis lyrata HOM05D003689 ORTHO05D003950 1.1e-19 102.4 169 66.3
EL10Ac2g04074 Beta vulgaris HOM05D003689 ORTHO05D003950 1.1e-19 102.4 167 51.5
Gohir.D06G062000 Gossypium hirsutum HOM05D003689 ORTHO05D003950 1.1e-19 102.4 168 72.6
Thecc.09G108800 Theobroma cacao HOM05D003689 ORTHO05D003950 1.1e-19 102.4 168 73.2
CDE02G3880 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 1.4e-19 102.1 167 70.1
Oeu002241.1 Olea europaea HOM05D003689 ORTHO05D003950 1.9e-19 101.7 165 67.3
MELO3C003585.2 Cucumis melo HOM05D003689 ORTHO05D003950 2.4e-19 101.3 167 52.1
Glyma.14G141800 Glycine max HOM05D003689 ORTHO05D003950 2.4e-19 101.3 167 66.5
RcHm_v2.0_Chr2g0090251 Rosa chinensis HOM05D003689 ORTHO05D003950 2.4e-19 101.3 167 73.1
CDE04G3773 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 4.1e-19 100.5 167 34.1
Eucgr.C03818 Eucalyptus grandis HOM05D003689 ORTHO05D003950 4.1e-19 100.5 167 73.1
FvH4_1g04540 Fragaria vesca HOM05D003689 ORTHO05D003950 4.1e-19 100.5 167 72.5
FAN23G2461 Fragaria x ananassa HOM05D003689 ORTHO05D003950 4.1e-19 100.5 167 72.5
THA.LOC104811116 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 4.1e-19 100.5 166 75.3
Cfa003251 Carpinus fangiana HOM05D003689 ORTHO05D003950 5.4e-19 100.1 167 76.0
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 7.0e-19 99.8 168 35.1
Thhalv10003915m.g Eutrema salsugineum HOM05D003689 ORTHO05D003950 7.0e-19 99.8 169 43.8
Ah.16g105250 Amaranthus hybridus HOM05D003689 ORTHO05D003950 9.2e-19 99.4 167 50.3
Sc23g0005900 Simmondsia chinensis HOM05D003689 ORTHO05D003950 9.2e-19 99.4 167 72.5
BcaC04g23586 Brassica carinata HOM05D003689 ORTHO05D003950 1.2e-18 99.0 169 68.6
A09p06120 Brassica napus HOM05D003689 ORTHO05D003950 1.2e-18 99.0 169 68.6
BraA09t36253Z Brassica rapa HOM05D003689 ORTHO05D003950 1.2e-18 99.0 169 68.6
AUR62009331 Chenopodium quinoa HOM05D003689 ORTHO05D003950 1.2e-18 99.0 167 55.1
FAN26G3272 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.2e-18 99.0 167 72.5
Gohir.A08G250800 Gossypium hirsutum HOM05D003689 ORTHO05D003950 1.2e-18 99.0 167 72.5
Sed0017853 Sechium edule HOM05D003689 ORTHO05D003950 1.2e-18 99.0 167 71.3
GSVIVG01015378001 Vitis vinifera HOM05D003689 ORTHO05D003950 1.2e-18 99.0 167 76.0
C09p06740 Brassica napus HOM05D003689 ORTHO05D003950 1.6e-18 98.6 169 68.6
BolC9t53595H Brassica oleracea HOM05D003689 ORTHO05D003950 1.6e-18 98.6 169 68.6
Lj7A652T76 Lonicera japonica HOM05D003689 ORTHO05D003950 1.6e-18 98.6 166 76.5
MSTRG.14008 Avicennia marina HOM05D003689 ORTHO05D003950 2.0e-18 98.2 167 74.3
BcaB04g19771 Brassica carinata HOM05D003689 ORTHO05D003950 2.0e-18 98.2 169 41.4
Atru.chr7.2161 Acer truncatum HOM05D003689 ORTHO05D003950 2.7e-18 97.8 167 70.1
MBI04_g29969_MAGBIO Magnolia biondii HOM05D003689 ORTHO05D003950 2.7e-18 97.8 168 75.6
Sc18g0001340 Simmondsia chinensis HOM05D003689 ORTHO05D003950 3.5e-18 97.4 167 71.3
VMungo0331G0581 Vigna mungo HOM05D003689 ORTHO05D003950 3.5e-18 97.4 167 74.3
Prupe.7G232600 Prunus persica HOM05D003689 ORTHO05D003950 4.6e-18 97.1 167 76.0
Gohir.D08G272300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 6.0e-18 96.7 167 71.9
Gorai.004G290700 Gossypium raimondii HOM05D003689 ORTHO05D003950 6.0e-18 96.7 167 71.9
arahy.Tifrunner.gnm1.ann1.Z43HYI Arachis hypogaea HOM05D003689 ORTHO05D003950 7.8e-18 96.3 166 74.7
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 7.8e-18 96.3 169 33.1
FAN28G1273 Fragaria x ananassa HOM05D003689 ORTHO05D003950 7.8e-18 96.3 167 71.3
Glyma.05G230700 Glycine max HOM05D003689 ORTHO05D003950 1.0e-17 95.9 167 74.3
Glyma.08G038200 Glycine max HOM05D003689 ORTHO05D003950 1.0e-17 95.9 167 72.5
Phvul.010G165600 Phaseolus vulgaris HOM05D003689 ORTHO05D003950 1.0e-17 95.9 167 73.7
MELO3C025352.2 Cucumis melo HOM05D003689 ORTHO05D003950 1.3e-17 95.5 167 71.9
AUR62023017 Chenopodium quinoa HOM05D003689 ORTHO05D003950 2.3e-17 94.7 167 55.7
CsaV3_1G025520 Cucumis sativus L. HOM05D003689 ORTHO05D003950 2.3e-17 94.7 167 71.9
Lalb_Chr05g0222931 Lupinus albus HOM05D003689 ORTHO05D003950 5.0e-17 93.6 167 34.1
Sed0002455 Sechium edule HOM05D003689 ORTHO05D003950 5.0e-17 93.6 167 73.7
CAN.G797.4 Capsicum annuum HOM05D003689 ORTHO05D003950 8.6e-17 92.8 167 73.7
Ca_17333_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 1.5e-16 92.0 166 69.9
Lalb_Chr14g0362401 Lupinus albus HOM05D003689 ORTHO05D003950 1.5e-16 92.0 167 68.3
arahy.Tifrunner.gnm1.ann1.EDC6ME Arachis hypogaea HOM05D003689 ORTHO05D003950 1.9e-16 91.7 167 74.3
arahy.Tifrunner.gnm1.ann1.K2CPZ4 Arachis hypogaea HOM05D003689 ORTHO05D003950 1.9e-16 91.7 167 74.3
arahy.Tifrunner.gnm1.ann1.WWE821 Arachis hypogaea HOM05D003689 ORTHO05D003950 2.5e-16 91.3 167 65.3
MD15G1183500 Malus domestica HOM05D003689 ORTHO05D003950 3.3e-16 90.9 167 70.7
BcaB06g28622 Brassica carinata HOM05D000888 ORTHO05D000740 4.3e-16 90.5 169 33.7
Duzib150G1680 Durio zibethinus HOM05D003689 ORTHO05D003950 4.3e-16 90.5 167 73.1
Rhsim01G0097100 Rhododendron simsii HOM05D003689 ORTHO05D003950 4.3e-16 90.5 166 64.5
arahy.Tifrunner.gnm1.ann1.SBHH31 Arachis hypogaea HOM05D003689 ORTHO05D003950 5.6e-16 90.1 167 74.3
THA.LOC104799204 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 9.5e-16 89.4 169 60.9
Aqoxy7G03846 Aquilegia oxysepala HOM05D003689 ORTHO05D003950 1.2e-15 89.0 167 74.9
Solyc08g068230.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 1.6e-15 88.6 167 65.9
Manes.03G021600 Manihot esculenta HOM05D003689 ORTHO05D003950 2.1e-15 88.2 167 74.3
Sopen08g022090 Solanum pennellii HOM05D003689 ORTHO05D003950 2.1e-15 88.2 167 65.3
PGSC0003DMG400014513 Solanum tuberosum HOM05D003689 ORTHO05D003950 2.1e-15 88.2 167 65.3
arahy.Tifrunner.gnm1.ann1.3U27PV Arachis hypogaea HOM05D003689 ORTHO05D003950 2.8e-15 87.8 167 73.7
Duzib187G1779 Durio zibethinus HOM05D003689 ORTHO05D003950 2.8e-15 87.8 167 73.1
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 6.2e-15 86.7 167 32.3
AT5G21222 Arabidopsis thaliana HOM05D000055 ORTHO05D003950 8.1e-15 86.3 167 68.3
Sp6g23340 Schrenkiella parvula HOM05D000055 ORTHO05D003950 8.1e-15 86.3 167 68.3
Hund09215 Selenicereus undatus HOM05D003689 ORTHO05D003950 1.1e-14 85.9 167 62.9
arahy.Tifrunner.gnm1.ann1.6C9669 Arachis hypogaea HOM05D003689 ORTHO05D003950 1.4e-14 85.5 167 64.1
Carub.0006s1949 Capsella rubella HOM05D000055 ORTHO05D003950 1.4e-14 85.5 167 68.3
Peaxi162Scf00523g00624 Petunia axillaris HOM05D003689 ORTHO05D003950 1.4e-14 85.5 167 67.1
HanXRQChr06g0180011 Helianthus annuus HOM05D003689 ORTHO05D003950 3.1e-14 84.3 165 72.1
Lalb_Chr16g0388171 Lupinus albus HOM05D003689 ORTHO05D003950 6.8e-14 83.2 167 68.3
vmacro20709 Vaccinium macrocarpon HOM05D003689 ORTHO05D003950 6.8e-14 83.2 157 32.5
AL6G32800 Arabidopsis lyrata HOM05D000055 ORTHO05D003950 1.2e-13 82.4 167 67.1
CARHR191690 Cardamine hirsuta HOM05D000055 ORTHO05D003950 2.0e-13 81.6 167 67.1
PGR102G1523 Punica granatum HOM05D003689 ORTHO05D003950 2.0e-13 81.6 167 71.9
A10p18880 Brassica napus HOM05D000055 ORTHO05D003950 2.6e-13 81.3 167 66.5
C09p54880 Brassica napus HOM05D000055 ORTHO05D003950 2.6e-13 81.3 167 66.5
BolC9t58349H Brassica oleracea HOM05D000055 ORTHO05D003950 2.6e-13 81.3 167 66.5
BraA10t43967Z Brassica rapa HOM05D000055 ORTHO05D003950 2.6e-13 81.3 167 66.5
Thhalv10012659m.g Eutrema salsugineum HOM05D000055 ORTHO05D003950 2.6e-13 81.3 167 65.3
Lsat_1_v5_gn_8_95421 Lactuca sativa HOM05D003689 ORTHO05D003950 2.6e-13 81.3 167 72.5
Zm00001eb315460 Zea mays HOM05D003689 ORTHO05D003950 5.8e-13 80.1 165 28.5
SGA_v2.0_scaffold163G38088 Striga asiatica HOM05D003689 ORTHO05D003950 7.5e-13 79.7 167 64.7
Cpa.g.sc78.82 Carica papaya HOM05D003689 ORTHO05D003950 9.8e-13 79.3 47 72.3
Ciclev10007776m.g Citrus clementina HOM05D003689 ORTHO05D003950 2.2e-12 78.2 167 67.1
Ca_12812_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 3.7e-12 77.4 167 65.9
Aa31LG1G13560 Aethionema arabicum HOM05D000055 ORTHO05D003950 4.9e-12 77.0 167 62.9
Migut.E01508 Erythranthe guttata HOM05D003689 ORTHO05D003950 6.4e-12 76.6 45 71.1
CANSAT56G1603 Cannabis sativa HOM05D003689 ORTHO05D003950 1.1e-11 75.9 167 70.1
CANSAT56G4471 Cannabis sativa HOM05D003689 ORTHO05D003950 1.1e-11 75.9 167 70.1
Nn7g35992 Nelumbo nucifera HOM05D003689 ORTHO05D003950 3.2e-11 74.3 47 68.1
QL02p045402 Quercus lobata HOM05D003689 ORTHO05D003950 5.4e-11 73.6 49 71.4
EL10Ac8g18479 Beta vulgaris HOM05D003689 ORTHO05D003950 9.2e-11 72.8 47 72.3
COL.COLO4_34846 Corchorus olitorius HOM05D001279 ORTHO05D001636 1.2e-10 72.4 49 65.3
ECA238G3870 Erigeron canadensis HOM05D003689 ORTHO05D009814 2.7e-10 71.2 167 68.9
Solyc07g032380.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 3.5e-10 70.9 49 67.3
QL02p044325 Quercus lobata HOM05D003689 ORTHO05D003950 4.6e-10 70.5 49 69.4
Ah.14g082150 Amaranthus hybridus HOM05D003689 ORTHO05D003950 1.0e-09 69.3 167 64.1
Actinidia32677 Actinidia chinensis HOM05D001279 ORTHO05D003950 1.7e-09 68.6 45 64.4
CSS0016195 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 1.7e-09 68.6 49 61.2
AUR62021489 Chenopodium quinoa HOM05D003689 ORTHO05D003950 1.7e-09 68.6 167 67.1
ATR0315G024 Amborella trichopoda HOM05D003689 ORTHO05D003950 3.9e-09 67.4 49 61.2
AUR62010979 Chenopodium quinoa HOM05D003689 ORTHO05D003950 3.9e-09 67.4 167 66.5
Lalb_Chr14g0371561 Lupinus albus HOM05D003689 ORTHO05D003950 3.9e-09 67.4 166 64.5
Actinidia32678 Actinidia chinensis HOM05D003689 ORTHO05D003950 6.6e-09 66.6 49 59.2
BcaC04g19516 Brassica carinata HOM05D000055 ORTHO05D000057 8.6e-09 66.2 49 61.2
MSTRG.6008 Avicennia marina HOM05D003689 ORTHO05D003950 1.5e-08 65.5 45 64.4
EL10Ac8g18465 Beta vulgaris HOM05D003689 ORTHO05D003950 1.9e-08 65.1 43 67.4
EL10Ac8g18466 Beta vulgaris HOM05D003689 ORTHO05D003950 1.9e-08 65.1 43 67.4
EL10Ac8g18472 Beta vulgaris HOM05D003689 ORTHO05D003950 1.9e-08 65.1 43 67.4
Migut.J01154 Erythranthe guttata HOM05D003689 ORTHO05D003950 1.9e-08 65.1 49 59.2
EL10Ac8g18468 Beta vulgaris HOM05D003689 ORTHO05D003950 2.5e-08 64.7 162 29.0
Medtr8g103480 Medicago truncatula HOM05D003689 ORTHO05D003950 2.5e-08 64.7 45 55.6
Potri.018G081700 Populus trichocarpa HOM05D003689 ORTHO05D003950 2.5e-08 64.7 49 59.2
Sabra18G0068800 Salix brachista HOM05D003689 ORTHO05D003950 2.5e-08 64.7 49 59.2
Lj4g0026082 Lotus japonicus HOM05D003689 ORTHO05D003950 7.3e-08 63.2 49 61.2
Potri.006G242600 Populus trichocarpa HOM05D003689 ORTHO05D003950 9.5e-08 62.8 140 34.3
Cpa.g.sc78.81 Carica papaya HOM05D003689 ORTHO05D003950 1.2e-07 62.4 138 37.0
Cpa.g.sc23.95 Carica papaya HOM05D003689 ORTHO05D003950 1.6e-07 62.0 41 61.0


User provided reference genes

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